Wall clock time and date at job start Mon Mar 30 2020 07:46:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38879 * 120.74817 * 2 1 4 4 C 1.38041 * 119.33073 * 180.31415 * 3 2 1 5 5 N 1.31967 * 120.85277 * 359.68402 * 4 3 2 6 6 C 1.32414 * 121.62088 * 0.02562 * 5 4 3 7 7 N 1.39088 * 119.70339 * 179.97438 * 6 5 4 8 8 C 1.46499 * 119.99860 * 265.01492 * 7 6 5 9 9 C 1.50696 * 109.47220 * 89.99911 * 8 7 6 10 10 H 1.08002 * 120.00158 * 359.97438 * 9 8 7 11 11 C 1.37883 * 120.00175 * 180.02562 * 9 8 7 12 12 N 1.31515 * 119.99733 * 359.97438 * 11 9 8 13 13 Si 1.86797 * 120.00130 * 179.97438 * 11 9 8 14 14 H 1.48497 * 109.47048 * 0.02562 * 13 11 9 15 15 H 1.48507 * 109.47073 * 119.99870 * 13 11 9 16 16 H 1.48500 * 109.47343 * 239.99590 * 13 11 9 17 17 C 1.39761 * 120.00192 * 85.01156 * 7 6 5 18 18 C 1.38910 * 120.07616 * 185.19731 * 17 7 6 19 19 C 1.38103 * 119.92545 * 179.79522 * 18 17 7 20 20 C 1.38292 * 120.07257 * 0.46047 * 19 18 17 21 21 C 1.38287 * 120.14788 * 359.78956 * 20 19 18 22 22 C 1.38097 * 120.07627 * 359.97438 * 21 20 19 23 23 C 1.38297 * 120.74233 * 179.72572 * 2 1 3 24 24 H 1.08996 * 109.47244 * 270.27644 * 1 2 3 25 25 H 1.09002 * 109.46845 * 30.26803 * 1 2 3 26 26 H 1.08999 * 109.47234 * 150.26820 * 1 2 3 27 27 H 1.08001 * 120.33769 * 0.04502 * 3 2 1 28 28 H 1.07996 * 119.57711 * 179.70014 * 4 3 2 29 29 H 1.08991 * 109.47053 * 210.00016 * 8 7 6 30 30 H 1.09000 * 109.46970 * 329.99820 * 8 7 6 31 31 H 0.97001 * 120.00042 * 180.02562 * 12 11 9 32 32 H 1.08002 * 120.03799 * 0.02562 * 18 17 7 33 33 H 1.07995 * 119.95923 * 180.23106 * 19 18 17 34 34 H 1.07997 * 119.92012 * 179.77156 * 20 19 18 35 35 H 1.08004 * 119.95499 * 179.97438 * 21 20 19 36 36 H 1.08009 * 120.03342 * 179.97438 * 22 21 20 37 37 H 1.07999 * 120.45652 * 359.97438 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2171 1.1936 0.0000 4 6 3.5971 1.1594 -0.0066 5 7 4.2456 0.0101 -0.0066 6 6 3.6048 -1.1486 -0.0009 7 7 4.3285 -2.3364 -0.0017 8 6 4.6094 -3.0221 -1.2655 9 6 5.9137 -2.5211 -1.8298 10 1 6.4770 -1.7669 -1.3003 11 6 6.3876 -3.0247 -3.0227 12 7 5.7014 -3.9427 -3.6677 13 14 8.0041 -2.4031 -3.7226 14 1 8.5767 -1.3794 -2.8119 15 1 8.9552 -3.5361 -3.8533 16 1 7.7659 -1.8003 -5.0586 17 6 4.7879 -2.8757 1.2031 18 6 5.6013 -4.0017 1.1965 19 6 6.0569 -4.5295 2.3886 20 6 5.6964 -3.9439 3.5884 21 6 4.8825 -2.8260 3.5988 22 6 4.4274 -2.2902 2.4101 23 6 2.2140 -1.1886 0.0057 24 1 -0.3633 0.0050 1.0276 25 1 -0.3633 0.8876 -0.5180 26 1 -0.3633 -0.8924 -0.5097 27 1 1.6949 2.1389 0.0007 28 1 4.1532 2.0852 -0.0115 29 1 4.6783 -4.0954 -1.0889 30 1 3.8059 -2.8214 -1.9741 31 1 6.0349 -4.2973 -4.5067 32 1 5.8803 -4.4616 0.2600 33 1 6.6924 -5.4026 2.3839 34 1 6.0510 -4.3609 4.5194 35 1 4.6025 -2.3715 4.5376 36 1 3.7913 -1.4173 2.4190 37 1 1.6937 -2.1350 0.0106 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000043561315.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:46:36 Heat of formation + Delta-G solvation = 53.946225 kcal Electronic energy + Delta-G solvation = -19754.855078 eV Core-core repulsion = 16882.373690 eV Total energy + Delta-G solvation = -2872.481387 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.127 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.52282 -39.95476 -37.22218 -34.96541 -34.59828 -32.08865 -31.45818 -30.53861 -28.72368 -28.22750 -25.26122 -24.15829 -23.55846 -22.71317 -21.24328 -18.70315 -18.67265 -17.52589 -17.46457 -16.87532 -16.66252 -16.04622 -15.50245 -15.33829 -14.80970 -14.71431 -14.58772 -14.24022 -13.85736 -13.63751 -13.53601 -13.37283 -13.27962 -13.00992 -12.68150 -12.54077 -12.33223 -12.12876 -11.96833 -11.67247 -10.89263 -10.68289 -10.42687 -10.27550 -9.88778 -9.75279 -8.46528 -8.04640 -6.39138 0.12074 0.35720 0.61150 0.79975 1.31876 1.32901 1.46933 2.19877 2.37600 2.80786 3.02239 3.08214 3.72859 3.84119 3.96504 4.13966 4.17886 4.20452 4.31042 4.42593 4.67425 4.68880 4.72690 4.77946 4.82180 4.86880 4.99646 5.01322 5.08713 5.20495 5.23681 5.36439 5.52924 5.64558 5.67269 5.76356 5.80134 6.01539 6.13250 6.44864 6.77428 6.82346 7.21002 7.31590 8.80259 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.011889 B = 0.008159 C = 0.005578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2354.559220 B = 3431.154268 C = 5018.910970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.036 4.036 3 C -0.172 4.172 4 C 0.098 3.902 5 N -0.531 5.531 6 C 0.354 3.646 7 N -0.581 5.581 8 C 0.280 3.720 9 C -0.534 4.534 10 H 0.043 0.957 11 C 0.015 3.985 12 N -0.925 5.925 13 Si 0.960 3.040 14 H -0.277 1.277 15 H -0.270 1.270 16 H -0.274 1.274 17 C 0.209 3.791 18 C -0.205 4.205 19 C -0.079 4.079 20 C -0.181 4.181 21 C -0.076 4.076 22 C -0.205 4.205 23 C -0.184 4.184 24 H 0.094 0.906 25 H 0.094 0.906 26 H 0.070 0.930 27 H 0.177 0.823 28 H 0.178 0.822 29 H 0.025 0.975 30 H 0.003 0.997 31 H 0.268 0.732 32 H 0.103 0.897 33 H 0.139 0.861 34 H 0.150 0.850 35 H 0.148 0.852 36 H 0.103 0.897 37 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.971 7.000 11.725 16.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.045 4.045 3 C -0.191 4.191 4 C -0.060 4.060 5 N -0.244 5.244 6 C 0.129 3.871 7 N -0.288 5.288 8 C 0.159 3.841 9 C -0.573 4.573 10 H 0.062 0.938 11 C -0.185 4.185 12 N -0.565 5.565 13 Si 0.785 3.215 14 H -0.202 1.202 15 H -0.195 1.195 16 H -0.200 1.200 17 C 0.108 3.892 18 C -0.227 4.227 19 C -0.098 4.098 20 C -0.201 4.201 21 C -0.094 4.094 22 C -0.228 4.228 23 C -0.207 4.207 24 H 0.112 0.888 25 H 0.113 0.887 26 H 0.089 0.911 27 H 0.195 0.805 28 H 0.195 0.805 29 H 0.043 0.957 30 H 0.021 0.979 31 H 0.077 0.923 32 H 0.122 0.878 33 H 0.157 0.843 34 H 0.168 0.832 35 H 0.165 0.835 36 H 0.121 0.879 37 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -8.117 6.927 11.373 15.595 hybrid contribution 0.265 0.000 -1.140 1.170 sum -7.852 6.927 10.233 14.641 Atomic orbital electron populations 1.20884 0.87101 1.04386 1.04145 1.20682 0.98709 0.91536 0.93544 1.22398 0.94680 0.99884 1.02170 1.23146 0.93166 0.95144 0.94533 1.67514 1.43933 0.99457 1.13446 1.18287 0.88271 0.85392 0.95152 1.44203 1.58115 1.21021 1.05481 1.18789 0.94552 0.91760 0.78980 1.21707 1.06710 1.22478 1.06390 0.93831 1.25726 1.00907 0.95057 0.96770 1.70028 1.40138 1.29305 1.17003 0.85471 0.79516 0.78423 0.78059 1.20172 1.19529 1.19970 1.18160 0.92666 0.92873 0.85515 1.20899 1.03185 0.99210 0.99444 1.21163 0.97829 0.99312 0.91452 1.21182 1.02430 0.98291 0.98169 1.21130 0.95841 0.95512 0.96950 1.20626 1.07386 1.03110 0.91667 1.22210 0.93387 1.00416 1.04662 0.88794 0.88711 0.91132 0.80549 0.80533 0.95743 0.97946 0.92294 0.87845 0.84307 0.83249 0.83469 0.87853 0.85245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.83 10.06 71.24 0.72 -1.11 16 2 C -0.04 -0.96 5.91 -19.70 -0.12 -1.07 16 3 C -0.17 -4.15 9.81 22.38 0.22 -3.93 16 4 C 0.10 3.04 11.17 84.63 0.95 3.99 16 5 N -0.53 -22.68 10.40 -193.17 -2.01 -24.69 16 6 C 0.35 15.41 4.49 133.03 0.60 16.01 16 7 N -0.58 -28.27 2.68 -517.36 -1.39 -29.66 16 8 C 0.28 15.61 4.79 85.63 0.41 16.02 16 9 C -0.53 -32.03 9.34 25.60 0.24 -31.79 16 10 H 0.04 2.76 7.81 -2.91 -0.02 2.74 16 11 C 0.01 0.85 5.46 84.66 0.46 1.31 16 12 N -0.92 -55.61 13.29 21.45 0.28 -55.33 16 13 Si 0.96 46.43 29.54 68.60 2.03 48.46 16 14 H -0.28 -13.52 7.11 99.48 0.71 -12.81 16 15 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 16 H -0.27 -12.75 7.11 99.48 0.71 -12.05 16 17 C 0.21 9.38 6.52 38.20 0.25 9.63 16 18 C -0.20 -8.95 9.17 22.40 0.21 -8.75 16 19 C -0.08 -2.71 10.04 22.25 0.22 -2.49 16 20 C -0.18 -5.30 10.04 22.29 0.22 -5.07 16 21 C -0.08 -2.33 10.04 22.25 0.22 -2.10 16 22 C -0.21 -7.83 9.31 22.40 0.21 -7.62 16 23 C -0.18 -6.54 9.72 22.50 0.22 -6.32 16 24 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 25 H 0.09 1.16 8.10 -2.39 -0.02 1.14 16 26 H 0.07 1.22 8.10 -2.39 -0.02 1.20 16 27 H 0.18 2.58 8.06 -2.91 -0.02 2.55 16 28 H 0.18 4.27 8.06 -2.91 -0.02 4.24 16 29 H 0.02 1.43 6.43 -2.39 -0.02 1.41 16 30 H 0.00 0.15 8.05 -2.39 -0.02 0.13 16 31 H 0.27 15.06 8.31 -92.71 -0.77 14.29 16 32 H 0.10 5.09 6.26 -2.91 -0.02 5.08 16 33 H 0.14 3.97 8.06 -2.91 -0.02 3.94 16 34 H 0.15 3.20 8.06 -2.91 -0.02 3.18 16 35 H 0.15 3.39 8.06 -2.91 -0.02 3.36 16 36 H 0.10 3.92 7.01 -2.91 -0.02 3.90 16 37 H 0.13 4.47 8.06 -2.91 -0.02 4.44 16 Total: -1.00 -73.26 319.66 5.00 -68.26 By element: Atomic # 1 Polarization: 15.20 SS G_CDS: 1.06 Total: 16.25 kcal Atomic # 6 Polarization: -28.33 SS G_CDS: 5.03 Total: -23.30 kcal Atomic # 7 Polarization: -106.57 SS G_CDS: -3.11 Total: -109.68 kcal Atomic # 14 Polarization: 46.43 SS G_CDS: 2.03 Total: 48.46 kcal Total: -73.26 5.00 -68.26 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043561315.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.209 kcal (2) G-P(sol) polarization free energy of solvation -73.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.263 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds