Wall clock time and date at job start Mon Mar 30 2020 06:41:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47237 * 2 1 4 4 N 1.46902 * 109.47440 * 120.00157 * 2 1 3 5 5 C 1.46895 * 111.00179 * 176.71440 * 4 2 1 6 6 C 1.50703 * 109.47150 * 293.95701 * 5 4 2 7 7 H 1.07998 * 119.99784 * 359.97438 * 6 5 4 8 8 C 1.37877 * 119.99633 * 180.02562 * 6 5 4 9 9 N 1.31519 * 119.99437 * 179.97438 * 8 6 5 10 10 Si 1.86795 * 120.00360 * 359.97438 * 8 6 5 11 11 H 1.48502 * 109.47041 * 89.99861 * 10 8 6 12 12 H 1.48505 * 109.47429 * 209.99895 * 10 8 6 13 13 H 1.48500 * 109.47296 * 330.00315 * 10 8 6 14 14 C 1.40076 * 110.99821 * 300.67117 * 4 2 1 15 15 C 1.38827 * 120.00609 * 290.15981 * 14 4 2 16 16 C 1.38102 * 120.01333 * 179.79235 * 15 14 4 17 17 C 1.38863 * 120.01851 * 0.46263 * 16 15 14 18 18 N 1.40002 * 119.99345 * 179.76867 * 17 16 15 19 19 C 1.38841 * 120.01058 * 359.79017 * 17 16 15 20 20 C 1.38199 * 119.98424 * 359.97438 * 19 17 16 21 21 Cl 1.73604 * 120.00866 * 179.97438 * 20 19 17 22 22 H 1.09004 * 109.47063 * 300.00131 * 1 2 3 23 23 H 1.09003 * 109.46965 * 59.99307 * 1 2 3 24 24 H 1.08996 * 109.47373 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.46851 * 240.00363 * 2 1 3 26 26 H 1.09005 * 109.47086 * 172.66780 * 3 2 1 27 27 H 1.08994 * 109.47214 * 292.66937 * 3 2 1 28 28 H 1.09003 * 109.47192 * 52.67041 * 3 2 1 29 29 H 1.09004 * 109.47099 * 173.95362 * 5 4 2 30 30 H 1.09001 * 109.46982 * 53.95706 * 5 4 2 31 31 H 0.97006 * 119.99553 * 179.97438 * 9 8 6 32 32 H 1.08007 * 119.98951 * 0.02562 * 15 14 4 33 33 H 1.08008 * 119.98675 * 180.23210 * 16 15 14 34 34 H 0.97006 * 119.99585 * 180.02562 * 18 17 16 35 35 H 0.96998 * 119.99989 * 0.02562 * 18 17 16 36 36 H 1.07997 * 120.00717 * 180.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 3.4860 -0.7805 1.1947 6 6 3.9324 -1.6676 0.0611 7 1 3.1999 -2.1210 -0.5904 8 6 5.2757 -1.9011 -0.1436 9 7 5.6652 -2.6757 -1.1326 10 14 6.5424 -1.1176 0.9836 11 1 6.8135 -2.0232 2.1288 12 1 7.7998 -0.8841 0.2287 13 1 6.0210 0.1776 1.4895 14 6 1.5581 -0.0663 2.3643 15 6 2.0441 1.1848 2.7191 16 6 1.5860 1.8042 3.8652 17 6 0.6461 1.1719 4.6684 18 7 0.1856 1.7982 5.8327 19 6 0.1634 -0.0816 4.3171 20 6 0.6180 -0.6996 3.1677 21 17 0.0153 -2.2673 2.7282 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5140 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 1.8933 -0.5138 -0.8901 26 1 3.1221 1.4453 0.1312 27 1 1.7877 1.9171 -0.9482 28 1 1.5736 1.9928 0.8172 29 1 3.8279 -1.2002 2.1408 30 1 3.9094 0.2155 1.0650 31 1 6.6103 -2.8397 -1.2769 32 1 2.7779 1.6754 2.0966 33 1 1.9616 2.7792 4.1389 34 1 -0.4707 1.3564 6.3940 35 1 0.5228 2.6740 6.0781 36 1 -0.5679 -0.5732 4.9416 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044414955.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:00 Heat of formation + Delta-G solvation = 34.008389 kcal Electronic energy + Delta-G solvation = -18907.560563 eV Core-core repulsion = 16031.781757 eV Total energy + Delta-G solvation = -2875.778806 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.104 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.92344 -37.37571 -35.96575 -33.61413 -32.64107 -30.96633 -30.56154 -28.43955 -26.78274 -25.85209 -22.66973 -21.78621 -21.59646 -19.32511 -17.09019 -16.96325 -16.59710 -15.52931 -15.29468 -14.53723 -14.17803 -13.98087 -13.67565 -13.45105 -13.07517 -12.99552 -12.55203 -12.26041 -11.74590 -11.56237 -11.44095 -11.23698 -11.12673 -10.77578 -10.56248 -10.46370 -10.29954 -10.08010 -9.87409 -9.71133 -9.22754 -8.53354 -8.47228 -7.51508 -7.21173 -6.01777 -3.98218 1.48889 1.72513 2.67431 3.30584 3.37692 3.39260 3.87638 3.95093 4.44444 4.67243 5.08745 5.22798 5.30112 5.56169 5.62316 5.70016 5.78171 5.95082 5.99825 6.05640 6.15393 6.30511 6.30974 6.38477 6.49467 6.68314 6.72620 6.82500 6.86268 7.02181 7.13154 7.44250 7.66446 7.71424 7.94737 8.21713 8.72168 9.07946 9.59938 11.11290 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.019063 B = 0.007081 C = 0.006547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1468.442929 B = 3953.515016 C = 4275.783194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.090 3.910 3 C -0.193 4.193 4 N -0.480 5.480 5 C 0.165 3.835 6 C -0.504 4.504 7 H 0.083 0.917 8 C 0.070 3.930 9 N -0.900 5.900 10 Si 0.870 3.130 11 H -0.276 1.276 12 H -0.287 1.287 13 H -0.268 1.268 14 C 0.067 3.933 15 C -0.097 4.097 16 C -0.190 4.190 17 C 0.209 3.791 18 N -0.882 5.882 19 C -0.193 4.193 20 C 0.030 3.970 21 Cl -0.056 7.056 22 H 0.045 0.955 23 H 0.050 0.950 24 H 0.061 0.939 25 H 0.100 0.900 26 H 0.065 0.935 27 H 0.052 0.948 28 H 0.055 0.945 29 H 0.024 0.976 30 H -0.002 1.002 31 H 0.263 0.737 32 H 0.135 0.865 33 H 0.118 0.882 34 H 0.395 0.605 35 H 0.396 0.604 36 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.397 9.859 10.910 18.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.017 4.017 3 C -0.251 4.251 4 N -0.200 5.200 5 C 0.040 3.960 6 C -0.542 4.542 7 H 0.101 0.899 8 C -0.131 4.131 9 N -0.539 5.539 10 Si 0.697 3.303 11 H -0.202 1.202 12 H -0.213 1.213 13 H -0.193 1.193 14 C -0.030 4.030 15 C -0.118 4.118 16 C -0.214 4.214 17 C 0.105 3.895 18 N -0.423 5.423 19 C -0.216 4.216 20 C 0.001 3.999 21 Cl -0.027 7.027 22 H 0.064 0.936 23 H 0.069 0.931 24 H 0.080 0.920 25 H 0.118 0.882 26 H 0.084 0.916 27 H 0.071 0.929 28 H 0.074 0.926 29 H 0.042 0.958 30 H 0.015 0.985 31 H 0.073 0.927 32 H 0.152 0.848 33 H 0.136 0.864 34 H 0.223 0.777 35 H 0.224 0.776 36 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -11.442 9.108 10.693 18.117 hybrid contribution 1.044 1.218 0.937 1.857 sum -10.398 10.326 11.630 18.708 Atomic orbital electron populations 1.21852 0.95697 1.02000 1.00360 1.21582 0.93915 0.91799 0.94357 1.22786 1.02257 0.98816 1.01257 1.59924 1.13240 1.48795 0.98082 1.20275 0.81613 0.95933 0.98141 1.20993 0.92677 1.28139 1.12397 0.89932 1.24852 0.98182 0.94965 0.95143 1.69893 1.15875 1.37710 1.30416 0.86941 0.81530 0.80447 0.81339 1.20181 1.21273 1.19266 1.18642 0.97296 0.92017 0.95042 1.21850 0.99231 0.94765 0.95906 1.20513 1.02049 1.01459 0.97337 1.17510 0.93229 0.91404 0.87320 1.42407 1.50862 1.23004 1.25999 1.20247 1.06481 0.95811 0.99109 1.20612 0.96805 0.87818 0.94621 1.98350 1.86333 1.25190 1.92826 0.93600 0.93146 0.91954 0.88171 0.91623 0.92914 0.92594 0.95838 0.98486 0.92732 0.84752 0.86397 0.77683 0.77612 0.85622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.30 9.00 37.16 0.33 -1.97 16 2 C 0.09 1.71 2.80 -67.71 -0.19 1.52 16 3 C -0.19 -3.26 7.50 37.16 0.28 -2.98 16 4 N -0.48 -10.01 3.92 -164.81 -0.65 -10.65 16 5 C 0.17 3.97 3.12 -4.98 -0.02 3.96 16 6 C -0.50 -14.11 9.02 -34.44 -0.31 -14.42 16 7 H 0.08 2.52 7.36 -52.49 -0.39 2.13 16 8 C 0.07 2.01 5.47 -17.82 -0.10 1.92 16 9 N -0.90 -27.46 13.96 55.43 0.77 -26.68 16 10 Si 0.87 21.51 27.47 -169.99 -4.67 16.84 16 11 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 13 H -0.27 -6.33 6.54 56.52 0.37 -5.96 16 14 C 0.07 1.23 3.32 -83.61 -0.28 0.95 16 15 C -0.10 -1.59 6.84 -39.41 -0.27 -1.86 16 16 C -0.19 -2.61 9.89 -39.40 -0.39 -3.00 16 17 C 0.21 2.67 6.76 -83.67 -0.57 2.10 16 18 N -0.88 -7.76 9.10 32.45 0.30 -7.46 16 19 C -0.19 -2.71 9.67 -39.37 -0.38 -3.09 16 20 C 0.03 0.51 6.00 -39.34 -0.24 0.27 16 21 Cl -0.06 -0.96 28.43 -51.86 -1.47 -2.43 16 22 H 0.04 0.73 7.00 -51.93 -0.36 0.37 16 23 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 24 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 25 H 0.10 2.15 6.78 -51.93 -0.35 1.80 16 26 H 0.06 1.22 5.62 -51.93 -0.29 0.93 16 27 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.06 0.87 5.50 -51.93 -0.29 0.58 16 29 H 0.02 0.59 7.49 -51.93 -0.39 0.20 16 30 H 0.00 -0.06 4.28 -51.93 -0.22 -0.28 16 31 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 32 H 0.13 2.23 5.08 -52.48 -0.27 1.97 16 33 H 0.12 1.34 8.06 -52.48 -0.42 0.91 16 34 H 0.40 2.75 8.84 -40.82 -0.36 2.39 16 35 H 0.40 2.73 8.84 -40.82 -0.36 2.37 16 36 H 0.13 1.51 8.06 -52.49 -0.42 1.09 16 LS Contribution 298.66 15.07 4.50 4.50 Total: -1.00 -30.62 298.66 -7.90 -38.51 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: -4.56 Total: 3.99 kcal Atomic # 6 Polarization: -14.49 SS G_CDS: -2.12 Total: -16.61 kcal Atomic # 7 Polarization: -45.22 SS G_CDS: 0.42 Total: -44.80 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -4.67 Total: 16.84 kcal Atomic # 17 Polarization: -0.96 SS G_CDS: -1.47 Total: -2.43 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -30.62 -7.90 -38.51 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044414955.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.522 kcal (2) G-P(sol) polarization free energy of solvation -30.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.513 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds