Wall clock time and date at job start Mon Mar 30 2020 06:40:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47237 * 2 1 4 4 N 1.46902 * 109.47440 * 120.00157 * 2 1 3 5 5 C 1.46895 * 111.00179 * 176.71440 * 4 2 1 6 6 C 1.50703 * 109.47150 * 293.95701 * 5 4 2 7 7 H 1.07998 * 119.99784 * 359.97438 * 6 5 4 8 8 C 1.37877 * 119.99633 * 180.02562 * 6 5 4 9 9 N 1.31519 * 119.99437 * 179.97438 * 8 6 5 10 10 Si 1.86795 * 120.00360 * 359.97438 * 8 6 5 11 11 H 1.48502 * 109.47041 * 89.99861 * 10 8 6 12 12 H 1.48505 * 109.47429 * 209.99895 * 10 8 6 13 13 H 1.48500 * 109.47296 * 330.00315 * 10 8 6 14 14 C 1.40076 * 110.99821 * 300.67117 * 4 2 1 15 15 C 1.38827 * 120.00609 * 290.15981 * 14 4 2 16 16 C 1.38102 * 120.01333 * 179.79235 * 15 14 4 17 17 C 1.38863 * 120.01851 * 0.46263 * 16 15 14 18 18 N 1.40002 * 119.99345 * 179.76867 * 17 16 15 19 19 C 1.38841 * 120.01058 * 359.79017 * 17 16 15 20 20 C 1.38199 * 119.98424 * 359.97438 * 19 17 16 21 21 Cl 1.73604 * 120.00866 * 179.97438 * 20 19 17 22 22 H 1.09004 * 109.47063 * 300.00131 * 1 2 3 23 23 H 1.09003 * 109.46965 * 59.99307 * 1 2 3 24 24 H 1.08996 * 109.47373 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.46851 * 240.00363 * 2 1 3 26 26 H 1.09005 * 109.47086 * 172.66780 * 3 2 1 27 27 H 1.08994 * 109.47214 * 292.66937 * 3 2 1 28 28 H 1.09003 * 109.47192 * 52.67041 * 3 2 1 29 29 H 1.09004 * 109.47099 * 173.95362 * 5 4 2 30 30 H 1.09001 * 109.46982 * 53.95706 * 5 4 2 31 31 H 0.97006 * 119.99553 * 179.97438 * 9 8 6 32 32 H 1.08007 * 119.98951 * 0.02562 * 15 14 4 33 33 H 1.08008 * 119.98675 * 180.23210 * 16 15 14 34 34 H 0.97006 * 119.99585 * 180.02562 * 18 17 16 35 35 H 0.96998 * 119.99989 * 0.02562 * 18 17 16 36 36 H 1.07997 * 120.00717 * 180.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 3.4860 -0.7805 1.1947 6 6 3.9324 -1.6676 0.0611 7 1 3.1999 -2.1210 -0.5904 8 6 5.2757 -1.9011 -0.1436 9 7 5.6652 -2.6757 -1.1326 10 14 6.5424 -1.1176 0.9836 11 1 6.8135 -2.0232 2.1288 12 1 7.7998 -0.8841 0.2287 13 1 6.0210 0.1776 1.4895 14 6 1.5581 -0.0663 2.3643 15 6 2.0441 1.1848 2.7191 16 6 1.5860 1.8042 3.8652 17 6 0.6461 1.1719 4.6684 18 7 0.1856 1.7982 5.8327 19 6 0.1634 -0.0816 4.3171 20 6 0.6180 -0.6996 3.1677 21 17 0.0153 -2.2673 2.7282 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5140 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 1.8933 -0.5138 -0.8901 26 1 3.1221 1.4453 0.1312 27 1 1.7877 1.9171 -0.9482 28 1 1.5736 1.9928 0.8172 29 1 3.8279 -1.2002 2.1408 30 1 3.9094 0.2155 1.0650 31 1 6.6103 -2.8397 -1.2769 32 1 2.7779 1.6754 2.0966 33 1 1.9616 2.7792 4.1389 34 1 -0.4707 1.3564 6.3940 35 1 0.5228 2.6740 6.0781 36 1 -0.5679 -0.5732 4.9416 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044414955.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:59 Heat of formation + Delta-G solvation = 13.443125 kcal Electronic energy + Delta-G solvation = -18908.452340 eV Core-core repulsion = 16031.781757 eV Total energy + Delta-G solvation = -2876.670583 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.104 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.21606 -38.65715 -37.22775 -34.94875 -34.48731 -32.55899 -31.71660 -30.02824 -28.10370 -27.39651 -24.07073 -23.35055 -22.92233 -20.78845 -18.80116 -18.13218 -17.81384 -16.96033 -16.90296 -16.08721 -15.51981 -15.39052 -15.07466 -14.68334 -14.60351 -14.37532 -14.12785 -13.77750 -13.28646 -12.95880 -12.73061 -12.62886 -12.59079 -12.45424 -12.28492 -11.92633 -11.86860 -11.63725 -11.54567 -11.25884 -10.91650 -10.73408 -9.64272 -9.03745 -8.29509 -8.24229 -6.26114 0.33974 0.54662 1.34499 1.35522 1.43948 1.45623 2.35775 2.79768 3.01807 3.09065 3.24663 3.95964 4.13010 4.23219 4.32977 4.43975 4.51045 4.67105 4.75138 4.79696 4.84305 4.94540 4.99687 5.04031 5.10068 5.22127 5.25847 5.44029 5.48426 5.53424 5.65635 5.76604 6.12004 6.45514 6.57395 6.79402 6.93863 7.06895 7.36312 8.92041 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.019063 B = 0.007081 C = 0.006547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1468.442929 B = 3953.515016 C = 4275.783194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.086 3.914 3 C -0.182 4.182 4 N -0.492 5.492 5 C 0.181 3.819 6 C -0.505 4.505 7 H 0.039 0.961 8 C 0.011 3.989 9 N -0.948 5.948 10 Si 0.939 3.061 11 H -0.271 1.271 12 H -0.281 1.281 13 H -0.248 1.248 14 C 0.032 3.968 15 C -0.104 4.104 16 C -0.186 4.186 17 C 0.224 3.776 18 N -0.862 5.862 19 C -0.194 4.194 20 C 0.018 3.982 21 Cl -0.071 7.071 22 H 0.053 0.947 23 H 0.071 0.929 24 H 0.048 0.952 25 H 0.060 0.940 26 H 0.045 0.955 27 H 0.067 0.933 28 H 0.074 0.926 29 H 0.013 0.987 30 H 0.004 0.996 31 H 0.265 0.735 32 H 0.129 0.871 33 H 0.148 0.852 34 H 0.408 0.592 35 H 0.410 0.590 36 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.124 12.594 13.807 22.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.021 4.021 3 C -0.240 4.240 4 N -0.212 5.212 5 C 0.055 3.945 6 C -0.544 4.544 7 H 0.057 0.943 8 C -0.186 4.186 9 N -0.589 5.589 10 Si 0.762 3.238 11 H -0.197 1.197 12 H -0.207 1.207 13 H -0.171 1.171 14 C -0.065 4.065 15 C -0.125 4.125 16 C -0.210 4.210 17 C 0.118 3.882 18 N -0.403 5.403 19 C -0.218 4.218 20 C -0.010 4.010 21 Cl -0.042 7.042 22 H 0.072 0.928 23 H 0.090 0.910 24 H 0.067 0.933 25 H 0.078 0.922 26 H 0.064 0.936 27 H 0.086 0.914 28 H 0.093 0.907 29 H 0.031 0.969 30 H 0.021 0.979 31 H 0.074 0.926 32 H 0.147 0.853 33 H 0.165 0.835 34 H 0.238 0.762 35 H 0.240 0.760 36 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -12.212 11.878 13.637 21.822 hybrid contribution 1.131 0.386 0.101 1.199 sum -11.081 12.264 13.738 21.493 Atomic orbital electron populations 1.21711 0.93467 1.01609 1.01682 1.21558 0.95650 0.92484 0.92398 1.22658 1.00867 0.97582 1.02868 1.59684 1.10939 1.50676 0.99945 1.19933 0.84326 0.94864 0.95409 1.21201 0.92101 1.28198 1.12888 0.94298 1.25742 1.00543 0.95582 0.96756 1.70051 1.16497 1.39716 1.32625 0.85841 0.78532 0.80281 0.79110 1.19674 1.20654 1.17119 1.18642 0.99541 0.93436 0.94851 1.21796 0.99419 0.94187 0.97078 1.20759 1.01630 1.02396 0.96189 1.17560 0.92033 0.90714 0.87894 1.42392 1.50183 1.23332 1.24398 1.20448 1.06685 0.96338 0.98281 1.20755 0.97247 0.87452 0.95549 1.98341 1.86471 1.26320 1.93082 0.92806 0.91024 0.93264 0.92210 0.93609 0.91362 0.90703 0.96906 0.97852 0.92582 0.85328 0.83470 0.76211 0.75995 0.83560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.11 9.00 71.98 0.65 -3.46 16 2 C 0.09 3.34 2.80 44.92 0.13 3.47 16 3 C -0.18 -6.04 7.50 71.98 0.54 -5.50 16 4 N -0.49 -20.93 3.92 -675.33 -2.65 -23.58 16 5 C 0.18 8.84 3.12 85.56 0.27 9.11 16 6 C -0.51 -29.65 9.02 25.60 0.23 -29.42 16 7 H 0.04 2.55 7.36 -2.91 -0.02 2.53 16 8 C 0.01 0.64 5.47 84.65 0.46 1.10 16 9 N -0.95 -60.07 13.96 21.45 0.30 -59.77 16 10 Si 0.94 44.79 27.47 68.60 1.88 46.68 16 11 H -0.27 -12.69 7.11 99.48 0.71 -11.98 16 12 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 13 H -0.25 -10.91 6.54 99.48 0.65 -10.25 16 14 C 0.03 1.15 3.32 38.13 0.13 1.28 16 15 C -0.10 -3.19 6.84 22.38 0.15 -3.04 16 16 C -0.19 -4.38 9.89 22.39 0.22 -4.16 16 17 C 0.22 4.79 6.76 38.13 0.26 5.05 16 18 N -0.86 -10.82 9.10 -51.24 -0.47 -11.29 16 19 C -0.19 -4.87 9.67 22.40 0.22 -4.65 16 20 C 0.02 0.60 6.00 22.43 0.13 0.73 16 21 Cl -0.07 -2.43 28.43 -2.72 -0.08 -2.51 16 22 H 0.05 1.65 7.00 -2.38 -0.02 1.63 16 23 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 24 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 25 H 0.06 2.76 6.78 -2.38 -0.02 2.74 16 26 H 0.04 1.69 5.62 -2.38 -0.01 1.67 16 27 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 28 H 0.07 2.19 5.50 -2.39 -0.01 2.18 16 29 H 0.01 0.65 7.49 -2.38 -0.02 0.63 16 30 H 0.00 0.19 4.28 -2.39 -0.01 0.18 16 31 H 0.27 15.70 8.31 -92.70 -0.77 14.93 16 32 H 0.13 4.04 5.08 -2.91 -0.01 4.02 16 33 H 0.15 2.58 8.06 -2.91 -0.02 2.55 16 34 H 0.41 3.64 8.84 -92.70 -0.82 2.82 16 35 H 0.41 3.44 8.84 -92.71 -0.82 2.62 16 36 H 0.15 3.00 8.06 -2.91 -0.02 2.98 16 Total: -1.00 -69.24 298.66 1.80 -67.43 By element: Atomic # 1 Polarization: 13.09 SS G_CDS: -0.57 Total: 12.52 kcal Atomic # 6 Polarization: -32.87 SS G_CDS: 3.38 Total: -29.49 kcal Atomic # 7 Polarization: -91.82 SS G_CDS: -2.81 Total: -94.63 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 1.88 Total: 46.68 kcal Atomic # 17 Polarization: -2.43 SS G_CDS: -0.08 Total: -2.51 kcal Total: -69.24 1.80 -67.43 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044414955.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.878 kcal (2) G-P(sol) polarization free energy of solvation -69.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.435 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds