Wall clock time and date at job start Mon Mar 30 2020 07:01:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 C 1.50699 * 109.47083 * 119.99946 * 2 1 3 5 5 H 1.07999 * 120.00019 * 119.99669 * 4 2 1 6 6 C 1.37877 * 120.00129 * 299.99954 * 4 2 1 7 7 N 1.31519 * 119.99723 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99900 * 179.97438 * 6 4 2 9 9 H 1.48491 * 109.47312 * 359.97438 * 8 6 4 10 10 H 1.48501 * 109.46948 * 119.99892 * 8 6 4 11 11 H 1.48500 * 109.46809 * 239.99811 * 8 6 4 12 12 S 1.81002 * 109.47004 * 239.99911 * 2 1 3 13 13 C 1.76198 * 99.99953 * 65.00014 * 12 2 1 14 14 N 1.31548 * 126.45429 * 0.02782 * 13 12 2 15 15 N 1.28416 * 110.49830 * 179.97438 * 14 13 12 16 16 N 1.28901 * 110.34650 * 0.02562 * 15 14 13 17 17 N 1.35399 * 126.45180 * 179.71399 * 13 12 2 18 18 C 1.46503 * 127.38286 * 359.97438 * 17 13 12 19 19 C 1.54267 * 110.03177 * 237.16564 * 18 17 13 20 20 C 1.54889 * 104.19530 * 217.10740 * 19 18 17 21 21 C 1.54891 * 102.74667 * 37.94467 * 20 19 18 22 22 C 1.53875 * 110.02747 * 120.00255 * 18 17 13 23 23 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 25 25 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 26 26 H 0.97003 * 119.99231 * 179.97438 * 7 6 4 27 27 H 1.08997 * 110.01737 * 358.61618 * 18 17 13 28 28 H 1.08995 * 110.48442 * 335.78705 * 19 18 17 29 29 H 1.08996 * 110.48607 * 98.43065 * 19 18 17 30 30 H 1.09002 * 110.75742 * 279.63100 * 20 19 18 31 31 H 1.09001 * 110.75442 * 156.25422 * 20 19 18 32 32 H 1.08998 * 110.48504 * 203.37660 * 21 20 19 33 33 H 1.09006 * 110.60039 * 80.79244 * 21 20 19 34 34 H 1.09001 * 110.03062 * 238.56649 * 22 18 17 35 35 H 1.09002 * 110.03521 * 359.94882 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9436 0.8303 2.6034 8 14 2.3214 -1.1204 4.0079 9 1 3.1454 -2.2877 3.6038 10 1 3.1467 -0.1874 4.8165 11 1 1.1660 -1.5866 4.8160 12 16 2.1333 -0.8533 -1.4779 13 6 1.5439 0.2422 -2.7257 14 7 0.8623 1.3509 -2.5341 15 7 0.5899 1.9111 -3.6571 16 7 1.0670 1.2159 -4.6321 17 7 1.7123 0.1045 -4.0621 18 6 2.4144 -0.9730 -4.7638 19 6 3.5407 -0.3870 -5.6400 20 6 3.5319 -1.2713 -6.9116 21 6 2.0214 -1.5279 -7.1389 22 6 1.4483 -1.6984 -5.7168 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 0.7090 1.1614 3.4844 27 1 2.8290 -1.6789 -4.0441 28 1 3.3248 0.6504 -5.8952 29 1 4.5004 -0.4633 -5.1289 30 1 4.0604 -2.2080 -6.7344 31 1 3.9644 -0.7364 -7.7571 32 1 1.8724 -2.4368 -7.7218 33 1 1.5584 -0.6761 -7.6372 34 1 1.3949 -2.7564 -5.4602 35 1 0.4569 -1.2493 -5.6567 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000048247704.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:59 Heat of formation + Delta-G solvation = 97.536751 kcal Electronic energy + Delta-G solvation = -18236.162829 eV Core-core repulsion = 15397.475277 eV Total energy + Delta-G solvation = -2838.687552 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.105 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.38375 -38.45664 -34.20512 -33.64633 -31.75656 -30.28882 -29.05312 -28.36442 -25.41853 -23.77888 -22.83594 -21.42709 -20.97575 -20.32757 -17.94923 -16.67642 -16.09881 -16.04950 -15.77302 -15.00735 -14.64809 -13.88264 -13.64804 -13.13089 -12.93880 -12.48419 -12.25551 -12.16926 -11.96473 -11.45344 -11.39024 -11.23838 -11.15461 -11.01555 -10.92409 -10.88591 -10.71919 -10.43946 -10.34556 -10.19098 -9.92869 -9.45452 -9.11347 -8.59094 -7.26208 -6.24125 -4.37329 1.34296 1.48226 2.46543 2.75370 3.15391 3.19345 3.27220 3.32570 4.12314 4.22133 4.25534 4.56712 4.82045 4.97952 5.07294 5.11611 5.16973 5.22295 5.34430 5.53011 5.60614 5.68393 5.76173 5.86291 5.88083 5.94730 6.06242 6.50409 6.66116 6.78081 6.98966 7.34682 7.58992 7.75947 7.98484 8.61088 8.92890 9.27794 10.80842 Molecular weight = 268.11amu Principal moments of inertia in cm(-1) A = 0.033723 B = 0.004863 C = 0.004470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.084098 B = 5756.326526 C = 6262.932634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.099 3.901 3 H 0.065 0.935 4 C -0.522 4.522 5 H 0.067 0.933 6 C 0.075 3.925 7 N -0.876 5.876 8 Si 0.908 3.092 9 H -0.270 1.270 10 H -0.280 1.280 11 H -0.280 1.280 12 S -0.033 6.033 13 C 0.234 3.766 14 N -0.327 5.327 15 N -0.044 5.044 16 N -0.105 5.105 17 N -0.371 5.371 18 C 0.149 3.851 19 C -0.132 4.132 20 C -0.120 4.120 21 C -0.121 4.121 22 C -0.131 4.131 23 H 0.033 0.967 24 H 0.097 0.903 25 H 0.035 0.965 26 H 0.267 0.733 27 H 0.117 0.883 28 H 0.083 0.917 29 H 0.079 0.921 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.082 0.918 35 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.179 -6.429 -14.836 16.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.029 4.029 3 H 0.083 0.917 4 C -0.562 4.562 5 H 0.086 0.914 6 C -0.130 4.130 7 N -0.512 5.512 8 Si 0.734 3.266 9 H -0.195 1.195 10 H -0.206 1.206 11 H -0.206 1.206 12 S 0.195 5.805 13 C -0.149 4.149 14 N -0.184 5.184 15 N -0.040 5.040 16 N -0.092 5.092 17 N -0.171 5.171 18 C 0.046 3.954 19 C -0.170 4.170 20 C -0.158 4.158 21 C -0.159 4.159 22 C -0.170 4.170 23 H 0.052 0.948 24 H 0.115 0.885 25 H 0.054 0.946 26 H 0.077 0.923 27 H 0.135 0.865 28 H 0.101 0.899 29 H 0.098 0.902 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.101 0.899 35 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 4.031 -6.133 -15.273 16.945 hybrid contribution 0.052 -0.072 1.068 1.072 sum 4.083 -6.205 -14.205 16.030 Atomic orbital electron populations 1.22072 0.95409 1.00093 1.02582 1.21257 0.96729 0.97924 0.86993 0.91693 1.20592 1.33520 1.13583 0.88511 0.91448 1.24877 0.94510 0.94867 0.98772 1.69910 1.35066 1.22072 1.24197 0.86285 0.78734 0.79562 0.81992 1.19479 1.20620 1.20619 1.85698 1.67663 1.28833 0.98327 1.28300 0.98177 0.99234 0.89228 1.75094 1.18656 1.06495 1.18139 1.77826 1.13108 1.19631 0.93442 1.82243 1.13224 0.94825 1.18957 1.51752 1.41020 1.20322 1.04031 1.22338 0.92246 0.85562 0.95210 1.22760 0.97400 1.01035 0.95823 1.22468 0.96614 0.99685 0.97042 1.22340 0.95449 1.02176 0.95897 1.22512 0.99190 1.00765 0.94530 0.94759 0.88508 0.94616 0.92264 0.86542 0.89855 0.90217 0.90821 0.90764 0.91046 0.90995 0.89945 0.90435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.43 8.79 37.16 0.33 -3.10 16 2 C 0.10 2.40 2.28 -27.88 -0.06 2.34 16 3 H 0.07 1.75 8.14 -51.92 -0.42 1.33 16 4 C -0.52 -13.45 8.58 -34.44 -0.30 -13.74 16 5 H 0.07 1.70 7.71 -52.49 -0.40 1.29 16 6 C 0.08 1.96 5.30 -17.82 -0.09 1.87 16 7 N -0.88 -23.79 11.32 55.43 0.63 -23.16 16 8 Si 0.91 20.03 29.54 -169.99 -5.02 15.01 16 9 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 10 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 11 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 12 S -0.03 -0.65 20.84 -107.50 -2.24 -2.89 16 13 C 0.23 4.66 7.84 -89.17 -0.70 3.96 16 14 N -0.33 -7.28 9.71 30.50 0.30 -6.99 16 15 N -0.04 -0.94 13.38 60.35 0.81 -0.13 16 16 N -0.11 -1.96 13.55 60.35 0.82 -1.15 16 17 N -0.37 -6.30 3.24 -53.71 -0.17 -6.47 16 18 C 0.15 1.86 3.80 -66.81 -0.25 1.60 16 19 C -0.13 -1.37 6.52 -25.07 -0.16 -1.54 16 20 C -0.12 -0.93 6.91 -24.74 -0.17 -1.11 16 21 C -0.12 -1.01 6.83 -25.07 -0.17 -1.18 16 22 C -0.13 -1.38 6.58 -25.61 -0.17 -1.54 16 23 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 24 H 0.10 2.55 6.07 -51.93 -0.32 2.23 16 25 H 0.03 0.84 5.91 -51.93 -0.31 0.53 16 26 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 27 H 0.12 1.37 7.36 -51.93 -0.38 0.98 16 28 H 0.08 1.01 7.76 -51.93 -0.40 0.61 16 29 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 35 H 0.08 0.97 7.90 -51.93 -0.41 0.56 16 LS Contribution 302.46 15.07 4.56 4.56 Total: -1.00 -28.32 302.46 -6.82 -35.14 By element: Atomic # 1 Polarization: 3.27 SS G_CDS: -4.74 Total: -1.47 kcal Atomic # 6 Polarization: -10.70 SS G_CDS: -1.75 Total: -12.45 kcal Atomic # 7 Polarization: -40.27 SS G_CDS: 2.37 Total: -37.89 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -5.02 Total: 15.01 kcal Atomic # 16 Polarization: -0.65 SS G_CDS: -2.24 Total: -2.89 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -28.32 -6.82 -35.14 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048247704.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.675 kcal (2) G-P(sol) polarization free energy of solvation -28.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.138 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds