Wall clock time and date at job start Mon Mar 30 2020 07:02:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.46862 * 2 1 4 4 C 1.50693 * 109.47299 * 240.00097 * 2 1 3 5 5 H 1.08003 * 120.00063 * 240.00283 * 4 2 1 6 6 C 1.37879 * 120.00087 * 59.99881 * 4 2 1 7 7 N 1.31510 * 119.99674 * 359.97438 * 6 4 2 8 8 Si 1.86806 * 119.99910 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.46821 * 90.00212 * 8 6 4 10 10 H 1.48503 * 109.46810 * 210.00057 * 8 6 4 11 11 H 1.48496 * 109.47208 * 330.00187 * 8 6 4 12 12 S 1.81001 * 109.46818 * 119.99926 * 2 1 3 13 13 C 1.76201 * 100.00336 * 295.00091 * 12 2 1 14 14 N 1.31541 * 126.44793 * 359.97438 * 13 12 2 15 15 N 1.28424 * 110.49728 * 180.02562 * 14 13 12 16 16 N 1.28903 * 110.34255 * 0.02562 * 15 14 13 17 17 N 1.35390 * 126.45619 * 180.02562 * 13 12 2 18 18 C 1.46504 * 127.38494 * 359.96145 * 17 13 12 19 19 C 1.54267 * 110.03491 * 237.91005 * 18 17 13 20 20 C 1.54966 * 104.15915 * 217.13574 * 19 18 17 21 21 C 1.54894 * 102.77851 * 37.88553 * 20 19 18 22 22 C 1.53875 * 110.03574 * 120.68597 * 18 17 13 23 23 H 1.09007 * 109.47200 * 180.02562 * 1 2 3 24 24 H 1.08996 * 109.47810 * 300.00000 * 1 2 3 25 25 H 1.09002 * 109.47337 * 60.00143 * 1 2 3 26 26 H 0.97004 * 119.99728 * 179.97438 * 7 6 4 27 27 H 1.09002 * 110.01410 * 359.29842 * 18 17 13 28 28 H 1.09005 * 110.48007 * 335.77798 * 19 18 17 29 29 H 1.08989 * 110.49077 * 98.42126 * 19 18 17 30 30 H 1.08992 * 110.71949 * 279.57054 * 20 19 18 31 31 H 1.08996 * 110.76410 * 156.21674 * 20 19 18 32 32 H 1.09000 * 110.48667 * 203.40839 * 21 20 19 33 33 H 1.08997 * 110.60124 * 80.81304 * 21 20 19 34 34 H 1.08997 * 110.03476 * 238.57480 * 22 18 17 35 35 H 1.09008 * 110.03062 * 359.95632 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8296 -2.6033 8 14 2.3215 -1.1203 -4.0079 9 1 1.3428 -2.1616 -4.4118 10 1 2.4867 -0.1413 -5.1122 11 1 3.6294 -1.7583 -3.7121 12 16 2.1333 -0.8532 1.4779 13 6 1.5438 0.2422 2.7258 14 7 0.8623 1.3508 2.5341 15 7 0.5898 1.9111 3.6571 16 7 1.0679 1.2165 4.6321 17 7 1.7079 0.1020 4.0624 18 6 2.4034 -0.9795 4.7645 19 6 1.4430 -1.6702 5.7547 20 6 2.3346 -2.0032 6.9777 21 6 3.2641 -0.7677 7.0707 22 6 3.5611 -0.4063 5.6006 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 0.7087 1.1613 -3.4843 27 1 2.7851 -1.7055 4.0467 28 1 0.6392 -0.9923 6.0421 29 1 1.0364 -2.5824 5.3184 30 1 2.9132 -2.9092 6.7978 31 1 1.7314 -2.1015 7.8802 32 1 4.1855 -1.0220 7.5946 33 1 2.7569 0.0571 7.5712 34 1 4.5044 -0.8547 5.2891 35 1 3.6059 0.6765 5.4833 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000048247707.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:02 Heat of formation + Delta-G solvation = 82.133384 kcal Electronic energy + Delta-G solvation = -18236.455683 eV Core-core repulsion = 15397.100190 eV Total energy + Delta-G solvation = -2839.355492 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.105 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -43.93262 -39.36886 -36.13875 -34.95090 -33.39987 -32.22422 -29.83548 -29.38896 -27.40421 -25.18803 -24.38229 -23.34328 -21.68905 -21.47377 -19.37977 -18.23971 -17.85723 -17.46745 -16.85780 -16.66319 -15.67614 -15.53031 -14.84496 -14.53820 -14.42844 -14.03585 -13.74704 -13.49030 -13.18799 -13.06642 -12.89581 -12.64457 -12.51247 -12.24773 -12.18947 -12.06335 -11.96816 -11.94931 -11.82236 -11.59966 -11.35950 -11.21505 -11.02261 -10.55522 -8.88036 -8.20528 -6.41741 -0.17521 -0.09938 1.10600 1.12233 1.35838 1.47428 1.48470 1.59652 2.40969 3.08221 3.09905 3.38828 3.60490 3.69467 3.98284 4.12474 4.25511 4.34480 4.36649 4.55919 4.65663 4.66871 4.76094 4.83295 4.88727 4.95750 5.00911 5.13945 5.17649 5.32362 5.34524 5.40565 5.58599 5.77389 5.99442 6.62680 7.27699 7.34514 8.84561 Molecular weight = 268.11amu Principal moments of inertia in cm(-1) A = 0.033713 B = 0.004860 C = 0.004472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.333593 B = 5759.847728 C = 6259.324152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.087 3.913 3 H 0.029 0.971 4 C -0.537 4.537 5 H 0.073 0.927 6 C 0.028 3.972 7 N -0.908 5.908 8 Si 0.972 3.028 9 H -0.271 1.271 10 H -0.283 1.283 11 H -0.262 1.262 12 S 0.025 5.975 13 C 0.216 3.784 14 N -0.360 5.360 15 N -0.068 5.068 16 N -0.093 5.093 17 N -0.350 5.350 18 C 0.130 3.870 19 C -0.131 4.131 20 C -0.110 4.110 21 C -0.117 4.117 22 C -0.130 4.130 23 H 0.040 0.960 24 H 0.035 0.965 25 H 0.071 0.929 26 H 0.269 0.731 27 H 0.128 0.872 28 H 0.063 0.937 29 H 0.090 0.910 30 H 0.094 0.906 31 H 0.086 0.914 32 H 0.095 0.905 33 H 0.061 0.939 34 H 0.104 0.896 35 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.504 -8.764 16.048 19.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.042 4.042 3 H 0.047 0.953 4 C -0.577 4.577 5 H 0.091 0.909 6 C -0.175 4.175 7 N -0.545 5.545 8 Si 0.796 3.204 9 H -0.196 1.196 10 H -0.209 1.209 11 H -0.186 1.186 12 S 0.253 5.747 13 C -0.168 4.168 14 N -0.217 5.217 15 N -0.064 5.064 16 N -0.081 5.081 17 N -0.151 5.151 18 C 0.029 3.971 19 C -0.170 4.170 20 C -0.147 4.147 21 C -0.155 4.155 22 C -0.168 4.168 23 H 0.059 0.941 24 H 0.054 0.946 25 H 0.089 0.911 26 H 0.078 0.922 27 H 0.146 0.854 28 H 0.081 0.919 29 H 0.109 0.891 30 H 0.113 0.887 31 H 0.105 0.895 32 H 0.113 0.887 33 H 0.079 0.921 34 H 0.123 0.877 35 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 5.377 -8.476 16.517 19.328 hybrid contribution -0.315 0.643 -1.287 1.473 sum 5.061 -7.833 15.230 17.859 Atomic orbital electron populations 1.21887 0.95595 0.99943 1.01313 1.20966 0.96710 0.96777 0.89766 0.95309 1.20853 1.33681 1.13781 0.89336 0.90908 1.25743 0.94512 0.95400 1.01797 1.70033 1.36086 1.23462 1.24950 0.85334 0.79148 0.78132 0.77766 1.19617 1.20855 1.18578 1.85168 1.67216 1.27053 0.95302 1.28264 0.98865 0.99198 0.90460 1.74995 1.19697 1.07784 1.19207 1.77813 1.14417 1.20638 0.93485 1.82136 1.12494 0.94836 1.18640 1.52083 1.39920 1.19984 1.03114 1.23018 0.93477 0.84562 0.96010 1.22821 0.97735 1.00522 0.95886 1.22492 0.97062 0.98598 0.96588 1.22350 1.00999 0.98165 0.93965 1.22567 0.97055 1.00818 0.96396 0.94126 0.94641 0.91067 0.92202 0.85434 0.91864 0.89113 0.88698 0.89500 0.88660 0.92050 0.87743 0.92814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.32 8.79 71.98 0.63 -5.68 16 2 C 0.09 4.29 2.28 29.85 0.07 4.36 16 3 H 0.03 1.62 8.14 -2.40 -0.02 1.60 16 4 C -0.54 -27.67 8.58 25.60 0.22 -27.45 16 5 H 0.07 3.58 7.71 -2.91 -0.02 3.56 16 6 C 0.03 1.47 5.30 84.66 0.45 1.92 16 7 N -0.91 -50.40 11.32 21.45 0.24 -50.16 16 8 Si 0.97 40.70 29.54 68.60 2.03 42.72 16 9 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 10 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 11 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 12 S 0.02 0.97 20.84 -56.49 -1.18 -0.21 16 13 C 0.22 8.57 7.84 179.85 1.41 9.98 16 14 N -0.36 -16.35 9.71 -57.41 -0.56 -16.91 16 15 N -0.07 -2.93 13.38 37.02 0.50 -2.43 16 16 N -0.09 -3.48 13.55 37.02 0.50 -2.98 16 17 N -0.35 -11.62 3.24 -323.85 -1.05 -12.67 16 18 C 0.13 2.96 3.80 45.72 0.17 3.14 16 19 C -0.13 -2.42 6.53 31.70 0.21 -2.21 16 20 C -0.11 -1.30 6.91 31.91 0.22 -1.08 16 21 C -0.12 -1.60 6.83 31.67 0.22 -1.39 16 22 C -0.13 -2.42 6.57 31.32 0.21 -2.21 16 23 H 0.04 1.89 8.14 -2.38 -0.02 1.87 16 24 H 0.03 1.71 5.91 -2.39 -0.01 1.70 16 25 H 0.07 3.88 6.07 -2.39 -0.01 3.87 16 26 H 0.27 14.10 8.31 -92.71 -0.77 13.33 16 27 H 0.13 2.63 7.36 -2.39 -0.02 2.62 16 28 H 0.06 1.44 7.78 -2.38 -0.02 1.42 16 29 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 35 H 0.05 1.28 7.88 -2.38 -0.02 1.26 16 Total: -1.00 -62.13 302.46 5.37 -56.75 By element: Atomic # 1 Polarization: 5.43 SS G_CDS: 1.09 Total: 6.52 kcal Atomic # 6 Polarization: -24.44 SS G_CDS: 3.80 Total: -20.64 kcal Atomic # 7 Polarization: -84.78 SS G_CDS: -0.37 Total: -85.15 kcal Atomic # 14 Polarization: 40.70 SS G_CDS: 2.03 Total: 42.72 kcal Atomic # 16 Polarization: 0.97 SS G_CDS: -1.18 Total: -0.21 kcal Total: -62.13 5.37 -56.75 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048247707.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.886 kcal (2) G-P(sol) polarization free energy of solvation -62.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.753 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds