Wall clock time and date at job start Mon Mar 30 2020 06:51:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46906 * 109.47144 * 2 1 4 4 C 1.46900 * 110.99588 * 195.52060 * 3 2 1 5 5 C 1.50702 * 109.47394 * 66.04243 * 4 3 2 6 6 H 1.08004 * 119.99709 * 0.02562 * 5 4 3 7 7 C 1.37878 * 120.00042 * 179.97438 * 5 4 3 8 8 N 1.31507 * 119.99760 * 0.02562 * 7 5 4 9 9 Si 1.86794 * 119.99997 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47305 * 90.00008 * 9 7 5 11 11 H 1.48500 * 109.47179 * 210.00245 * 9 7 5 12 12 H 1.48504 * 109.47046 * 330.00312 * 9 7 5 13 13 C 1.46893 * 111.00307 * 71.55979 * 3 2 1 14 14 C 1.50699 * 109.47307 * 198.12639 * 13 3 2 15 15 C 1.38129 * 120.02880 * 254.00562 * 14 13 3 16 16 C 1.38246 * 120.08755 * 179.74650 * 15 14 13 17 17 C 1.38424 * 120.13381 * 0.55001 * 16 15 14 18 18 Cl 1.73605 * 119.97547 * 179.72274 * 17 16 15 19 19 C 1.38201 * 120.05075 * 359.70561 * 17 16 15 20 20 C 1.38905 * 120.01915 * 74.28357 * 14 13 3 21 21 N 1.39668 * 120.06854 * 359.95344 * 20 14 13 22 22 H 1.09003 * 109.46978 * 58.09559 * 1 2 3 23 23 H 1.08991 * 109.47375 * 178.10001 * 1 2 3 24 24 H 1.09006 * 109.47552 * 298.10516 * 1 2 3 25 25 H 1.08995 * 109.47435 * 239.99124 * 2 1 3 26 26 H 1.09003 * 109.46872 * 119.99392 * 2 1 3 27 27 H 1.09004 * 109.46551 * 186.04409 * 4 3 2 28 28 H 1.08995 * 109.47174 * 306.04168 * 4 3 2 29 29 H 0.97004 * 119.99983 * 179.97438 * 8 7 5 30 30 H 1.09002 * 109.47377 * 318.13320 * 13 3 2 31 31 H 1.09006 * 109.46421 * 78.13204 * 13 3 2 32 32 H 1.07998 * 119.95426 * 359.97438 * 15 14 13 33 33 H 1.07994 * 119.93074 * 180.25296 * 16 15 14 34 34 H 1.08000 * 120.04335 * 180.02562 * 19 17 16 35 35 H 0.96996 * 120.00418 * 6.18751 * 21 20 14 36 36 H 0.97006 * 119.99725 * 186.19214 * 21 20 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4410 1.4408 -0.3670 5 6 3.6078 1.0015 -1.7989 6 1 2.7442 0.7104 -2.3784 7 6 4.8627 0.9721 -2.3693 8 7 5.9141 1.3271 -1.6636 9 14 5.0693 0.4283 -4.1443 10 1 4.9620 1.6083 -5.0393 11 1 6.4020 -0.2040 -4.3164 12 1 4.0082 -0.5520 -4.4884 13 6 1.7862 2.0260 1.3009 14 6 1.8756 3.5225 1.1469 15 6 2.9808 4.2015 1.6217 16 6 3.0664 5.5736 1.4764 17 6 2.0401 6.2730 0.8650 18 17 2.1487 7.9969 0.6911 19 6 0.9294 5.6000 0.3926 20 6 0.8438 4.2206 0.5325 21 7 -0.2770 3.5371 0.0559 22 1 -0.3633 0.5431 -0.8724 23 1 -0.3633 -1.0270 -0.0341 24 1 -0.3634 0.4841 0.9065 25 1 1.8934 -0.5139 -0.8898 26 1 1.8933 -0.5138 0.8901 27 1 3.8052 2.4621 -0.2555 28 1 4.0108 0.7787 0.2849 29 1 6.7971 1.3061 -2.0648 30 1 0.7951 1.7568 1.6660 31 1 2.5397 1.6884 2.0126 32 1 3.7807 3.6593 2.1038 33 1 3.9335 6.1014 1.8449 34 1 0.1289 6.1458 -0.0847 35 1 -0.3781 2.5887 0.2324 36 1 -0.9544 4.0109 -0.4518 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050443150.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:51:07 Heat of formation + Delta-G solvation = 13.521620 kcal Electronic energy + Delta-G solvation = -18447.984145 eV Core-core repulsion = 15571.316966 eV Total energy + Delta-G solvation = -2876.667179 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.104 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.42769 -36.91112 -36.10816 -34.04694 -32.64088 -31.48865 -29.73046 -28.49996 -26.87891 -24.62141 -22.49293 -22.11981 -21.11830 -19.69352 -17.03898 -16.82748 -16.33735 -15.43767 -14.85033 -14.56405 -14.23165 -14.02619 -13.62342 -13.54577 -13.16377 -12.87060 -12.52449 -12.09523 -11.85525 -11.69149 -11.32837 -11.12197 -11.04362 -10.80030 -10.67227 -10.64817 -10.45814 -10.24286 -10.05619 -9.79006 -9.16674 -8.42112 -8.32009 -7.29621 -7.14796 -6.00557 -4.01116 1.57553 1.91344 2.39728 3.32776 3.38921 3.41389 4.03264 4.26761 4.44574 4.96724 5.17222 5.34686 5.36469 5.45266 5.56667 5.69850 5.79072 5.88683 5.91141 6.01149 6.12168 6.17420 6.28697 6.45519 6.60461 6.66774 6.72206 6.90527 7.06496 7.33764 7.35367 7.77836 7.81396 8.09205 8.12380 8.21354 8.55373 9.05753 9.62464 11.10303 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.015796 B = 0.006172 C = 0.005031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1772.166586 B = 4535.583992 C = 5564.242224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.053 3.947 3 N -0.529 5.529 4 C 0.194 3.806 5 C -0.505 4.505 6 H 0.061 0.939 7 C 0.056 3.944 8 N -0.897 5.897 9 Si 0.895 3.105 10 H -0.281 1.281 11 H -0.288 1.288 12 H -0.275 1.275 13 C 0.094 3.906 14 C -0.132 4.132 15 C -0.049 4.049 16 C -0.171 4.171 17 C 0.011 3.989 18 Cl -0.089 7.089 19 C -0.201 4.201 20 C 0.253 3.747 21 N -0.865 5.865 22 H 0.059 0.941 23 H 0.051 0.949 24 H 0.042 0.958 25 H 0.087 0.913 26 H 0.018 0.982 27 H 0.036 0.964 28 H -0.012 1.012 29 H 0.260 0.740 30 H 0.064 0.936 31 H 0.036 0.964 32 H 0.127 0.873 33 H 0.124 0.876 34 H 0.124 0.876 35 H 0.403 0.597 36 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.889 5.434 6.906 13.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.075 4.075 3 N -0.254 5.254 4 C 0.069 3.931 5 C -0.544 4.544 6 H 0.080 0.920 7 C -0.145 4.145 8 N -0.536 5.536 9 Si 0.723 3.277 10 H -0.207 1.207 11 H -0.214 1.214 12 H -0.200 1.200 13 C -0.034 4.034 14 C -0.137 4.137 15 C -0.069 4.069 16 C -0.192 4.192 17 C -0.016 4.016 18 Cl -0.060 7.060 19 C -0.224 4.224 20 C 0.146 3.854 21 N -0.404 5.404 22 H 0.078 0.922 23 H 0.070 0.930 24 H 0.061 0.939 25 H 0.106 0.894 26 H 0.037 0.963 27 H 0.054 0.946 28 H 0.006 0.994 29 H 0.070 0.930 30 H 0.082 0.918 31 H 0.054 0.946 32 H 0.145 0.855 33 H 0.142 0.858 34 H 0.142 0.858 35 H 0.234 0.766 36 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -10.923 5.843 6.532 14.004 hybrid contribution 0.547 -0.675 -0.651 1.086 sum -10.376 5.168 5.881 12.998 Atomic orbital electron populations 1.21882 0.97029 1.00669 1.01047 1.21997 0.93751 0.90616 1.01180 1.62225 1.23131 1.15208 1.24826 1.19738 0.80506 0.97221 0.95679 1.21131 0.92651 1.43837 0.96781 0.92049 1.24960 0.95949 0.95695 0.97913 1.69950 0.98651 1.48535 1.36497 0.86548 0.77242 0.78754 0.85141 1.20709 1.21361 1.19953 1.20865 0.99876 0.90139 0.92542 1.19397 0.94613 0.95525 1.04171 1.20776 0.96186 0.93024 0.96875 1.20663 0.98997 0.94228 1.05332 1.20460 0.96410 0.83347 1.01375 1.98330 1.98262 1.12788 1.96616 1.20238 0.99869 0.92480 1.09847 1.17266 0.87252 0.89820 0.91094 1.42475 1.22781 1.12795 1.62355 0.92189 0.93037 0.93890 0.89429 0.96348 0.94567 0.99399 0.92994 0.91769 0.94629 0.85500 0.85773 0.85794 0.76566 0.78034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.06 8.98 37.16 0.33 -1.72 16 2 C 0.05 0.95 5.53 -3.82 -0.02 0.93 16 3 N -0.53 -10.67 4.31 -237.51 -1.02 -11.69 16 4 C 0.19 4.91 4.56 -4.97 -0.02 4.89 16 5 C -0.51 -14.01 8.29 -34.44 -0.29 -14.29 16 6 H 0.06 1.69 7.25 -52.48 -0.38 1.31 16 7 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 8 N -0.90 -26.59 13.29 55.43 0.74 -25.85 16 9 Si 0.90 21.72 29.54 -169.99 -5.02 16.70 16 10 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 12 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 13 C 0.09 1.62 4.18 -4.98 -0.02 1.60 16 14 C -0.13 -2.28 4.76 -104.42 -0.50 -2.77 16 15 C -0.05 -0.83 9.01 -39.62 -0.36 -1.19 16 16 C -0.17 -2.74 9.83 -39.51 -0.39 -3.13 16 17 C 0.01 0.18 6.32 -39.53 -0.25 -0.07 16 18 Cl -0.09 -1.23 28.95 -51.86 -1.50 -2.73 16 19 C -0.20 -3.05 9.68 -39.35 -0.38 -3.43 16 20 C 0.25 4.02 6.73 -83.79 -0.56 3.46 16 21 N -0.87 -11.55 9.00 32.41 0.29 -11.26 16 22 H 0.06 0.84 8.03 -51.93 -0.42 0.43 16 23 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 24 H 0.04 0.53 6.15 -51.93 -0.32 0.21 16 25 H 0.09 1.79 6.59 -51.93 -0.34 1.45 16 26 H 0.02 0.32 8.06 -51.93 -0.42 -0.09 16 27 H 0.04 1.00 6.84 -51.93 -0.35 0.64 16 28 H -0.01 -0.32 8.12 -51.93 -0.42 -0.74 16 29 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 30 H 0.06 0.95 5.45 -51.93 -0.28 0.67 16 31 H 0.04 0.63 7.82 -51.93 -0.41 0.22 16 32 H 0.13 2.05 7.99 -52.49 -0.42 1.63 16 33 H 0.12 1.78 8.06 -52.49 -0.42 1.35 16 34 H 0.12 1.63 8.06 -52.49 -0.42 1.21 16 35 H 0.40 5.33 5.51 -40.82 -0.22 5.11 16 36 H 0.39 4.25 8.85 -40.82 -0.36 3.89 16 LS Contribution 308.94 15.07 4.66 4.66 Total: -1.00 -29.80 308.94 -9.16 -38.97 By element: Atomic # 1 Polarization: 10.20 SS G_CDS: -4.75 Total: 5.45 kcal Atomic # 6 Polarization: -11.69 SS G_CDS: -2.55 Total: -14.24 kcal Atomic # 7 Polarization: -48.81 SS G_CDS: 0.01 Total: -48.80 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Atomic # 17 Polarization: -1.23 SS G_CDS: -1.50 Total: -2.73 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -29.80 -9.16 -38.97 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050443150.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.487 kcal (2) G-P(sol) polarization free energy of solvation -29.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.966 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds