Wall clock time and date at job start Mon Mar 30 2020 06:51:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46906 * 109.47144 * 2 1 4 4 C 1.46900 * 110.99588 * 195.52060 * 3 2 1 5 5 C 1.50702 * 109.47394 * 66.04243 * 4 3 2 6 6 H 1.08004 * 119.99709 * 0.02562 * 5 4 3 7 7 C 1.37878 * 120.00042 * 179.97438 * 5 4 3 8 8 N 1.31507 * 119.99760 * 0.02562 * 7 5 4 9 9 Si 1.86794 * 119.99997 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47305 * 90.00008 * 9 7 5 11 11 H 1.48500 * 109.47179 * 210.00245 * 9 7 5 12 12 H 1.48504 * 109.47046 * 330.00312 * 9 7 5 13 13 C 1.46893 * 111.00307 * 71.55979 * 3 2 1 14 14 C 1.50699 * 109.47307 * 198.12639 * 13 3 2 15 15 C 1.38129 * 120.02880 * 254.00562 * 14 13 3 16 16 C 1.38246 * 120.08755 * 179.74650 * 15 14 13 17 17 C 1.38424 * 120.13381 * 0.55001 * 16 15 14 18 18 Cl 1.73605 * 119.97547 * 179.72274 * 17 16 15 19 19 C 1.38201 * 120.05075 * 359.70561 * 17 16 15 20 20 C 1.38905 * 120.01915 * 74.28357 * 14 13 3 21 21 N 1.39668 * 120.06854 * 359.95344 * 20 14 13 22 22 H 1.09003 * 109.46978 * 58.09559 * 1 2 3 23 23 H 1.08991 * 109.47375 * 178.10001 * 1 2 3 24 24 H 1.09006 * 109.47552 * 298.10516 * 1 2 3 25 25 H 1.08995 * 109.47435 * 239.99124 * 2 1 3 26 26 H 1.09003 * 109.46872 * 119.99392 * 2 1 3 27 27 H 1.09004 * 109.46551 * 186.04409 * 4 3 2 28 28 H 1.08995 * 109.47174 * 306.04168 * 4 3 2 29 29 H 0.97004 * 119.99983 * 179.97438 * 8 7 5 30 30 H 1.09002 * 109.47377 * 318.13320 * 13 3 2 31 31 H 1.09006 * 109.46421 * 78.13204 * 13 3 2 32 32 H 1.07998 * 119.95426 * 359.97438 * 15 14 13 33 33 H 1.07994 * 119.93074 * 180.25296 * 16 15 14 34 34 H 1.08000 * 120.04335 * 180.02562 * 19 17 16 35 35 H 0.96996 * 120.00418 * 6.18751 * 21 20 14 36 36 H 0.97006 * 119.99725 * 186.19214 * 21 20 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4410 1.4408 -0.3670 5 6 3.6078 1.0015 -1.7989 6 1 2.7442 0.7104 -2.3784 7 6 4.8627 0.9721 -2.3693 8 7 5.9141 1.3271 -1.6636 9 14 5.0693 0.4283 -4.1443 10 1 4.9620 1.6083 -5.0393 11 1 6.4020 -0.2040 -4.3164 12 1 4.0082 -0.5520 -4.4884 13 6 1.7862 2.0260 1.3009 14 6 1.8756 3.5225 1.1469 15 6 2.9808 4.2015 1.6217 16 6 3.0664 5.5736 1.4764 17 6 2.0401 6.2730 0.8650 18 17 2.1487 7.9969 0.6911 19 6 0.9294 5.6000 0.3926 20 6 0.8438 4.2206 0.5325 21 7 -0.2770 3.5371 0.0559 22 1 -0.3633 0.5431 -0.8724 23 1 -0.3633 -1.0270 -0.0341 24 1 -0.3634 0.4841 0.9065 25 1 1.8934 -0.5139 -0.8898 26 1 1.8933 -0.5138 0.8901 27 1 3.8052 2.4621 -0.2555 28 1 4.0108 0.7787 0.2849 29 1 6.7971 1.3061 -2.0648 30 1 0.7951 1.7568 1.6660 31 1 2.5397 1.6884 2.0126 32 1 3.7807 3.6593 2.1038 33 1 3.9335 6.1014 1.8449 34 1 0.1289 6.1458 -0.0847 35 1 -0.3781 2.5887 0.2324 36 1 -0.9544 4.0109 -0.4518 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050443150.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:51:07 Heat of formation + Delta-G solvation = -5.119367 kcal Electronic energy + Delta-G solvation = -18448.792479 eV Core-core repulsion = 15571.316966 eV Total energy + Delta-G solvation = -2877.475513 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.104 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.69778 -38.37988 -37.35515 -35.24689 -34.71161 -32.76900 -31.24727 -29.83595 -28.54589 -26.19480 -24.22537 -23.42041 -22.45587 -21.20386 -18.56422 -18.23955 -17.90212 -16.84725 -16.56100 -16.08122 -15.73306 -15.34152 -15.10680 -14.78986 -14.45088 -14.22675 -14.10092 -13.91208 -13.37519 -12.93235 -12.82098 -12.65057 -12.49649 -12.34719 -12.33704 -12.19270 -11.82170 -11.74042 -11.57272 -11.22287 -11.18231 -10.57718 -9.58171 -8.96097 -8.35322 -8.16628 -6.25432 0.31334 0.66851 1.20335 1.40166 1.41625 1.51809 2.40989 2.76720 3.15496 3.16308 3.46619 3.93181 4.03348 4.20762 4.30481 4.42162 4.48968 4.60149 4.65599 4.76693 4.86782 4.94078 5.07567 5.16276 5.21603 5.24348 5.41743 5.41776 5.47634 5.63326 5.69942 5.83772 6.11721 6.41587 6.63129 6.69752 6.91274 7.09655 7.43299 8.93803 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.015796 B = 0.006172 C = 0.005031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1772.166586 B = 4535.583992 C = 5564.242224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.049 3.951 3 N -0.527 5.527 4 C 0.211 3.789 5 C -0.517 4.517 6 H 0.061 0.939 7 C 0.002 3.998 8 N -0.933 5.933 9 Si 0.963 3.037 10 H -0.278 1.278 11 H -0.284 1.284 12 H -0.263 1.263 13 C 0.098 3.902 14 C -0.156 4.156 15 C -0.064 4.064 16 C -0.183 4.183 17 C 0.006 3.994 18 Cl -0.073 7.073 19 C -0.202 4.202 20 C 0.249 3.751 21 N -0.855 5.855 22 H 0.059 0.941 23 H 0.073 0.927 24 H 0.063 0.937 25 H 0.059 0.941 26 H 0.019 0.981 27 H 0.009 0.991 28 H -0.044 1.044 29 H 0.262 0.738 30 H 0.094 0.906 31 H 0.026 0.974 32 H 0.121 0.879 33 H 0.135 0.865 34 H 0.147 0.853 35 H 0.405 0.595 36 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.894 5.578 6.152 15.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.079 4.079 3 N -0.252 5.252 4 C 0.085 3.915 5 C -0.555 4.555 6 H 0.079 0.921 7 C -0.196 4.196 8 N -0.574 5.574 9 Si 0.788 3.212 10 H -0.203 1.203 11 H -0.209 1.209 12 H -0.187 1.187 13 C -0.030 4.030 14 C -0.162 4.162 15 C -0.083 4.083 16 C -0.204 4.204 17 C -0.021 4.021 18 Cl -0.044 7.044 19 C -0.226 4.226 20 C 0.141 3.859 21 N -0.395 5.395 22 H 0.078 0.922 23 H 0.092 0.908 24 H 0.082 0.918 25 H 0.078 0.922 26 H 0.037 0.963 27 H 0.027 0.973 28 H -0.027 1.027 29 H 0.071 0.929 30 H 0.112 0.888 31 H 0.044 0.956 32 H 0.139 0.861 33 H 0.152 0.848 34 H 0.164 0.836 35 H 0.236 0.764 36 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -12.975 5.981 5.778 15.412 hybrid contribution 1.146 -0.678 -0.363 1.380 sum -11.830 5.303 5.415 14.049 Atomic orbital electron populations 1.21780 0.93066 1.02477 1.02072 1.22070 0.96914 0.89091 0.99849 1.62152 1.19407 1.16715 1.26895 1.19319 0.83355 0.94495 0.94318 1.21455 0.92757 1.43476 0.97828 0.92061 1.25845 0.95681 0.95755 1.02335 1.70084 0.99122 1.49714 1.38443 0.85482 0.77503 0.78514 0.79711 1.20348 1.20924 1.18698 1.20900 1.01085 0.90229 0.90787 1.19486 0.95522 0.95470 1.05686 1.20873 0.96300 0.93728 0.97435 1.20811 0.99785 0.93998 1.05769 1.20613 0.96344 0.84312 1.00878 1.98332 1.98233 1.11320 1.96499 1.20495 1.00281 0.92364 1.09457 1.17363 0.87520 0.90279 0.90747 1.42438 1.22245 1.12885 1.61899 0.92186 0.90835 0.91831 0.92239 0.96306 0.97319 1.02670 0.92931 0.88802 0.95591 0.86087 0.84756 0.83568 0.76392 0.76407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.40 8.98 71.98 0.65 -2.75 16 2 C 0.05 1.73 5.53 86.30 0.48 2.21 16 3 N -0.53 -21.30 4.31 -905.36 -3.90 -25.19 16 4 C 0.21 11.11 4.56 85.56 0.39 11.50 16 5 C -0.52 -29.12 8.29 25.60 0.21 -28.91 16 6 H 0.06 3.38 7.25 -2.91 -0.02 3.36 16 7 C 0.00 0.10 5.46 84.66 0.46 0.56 16 8 N -0.93 -56.62 13.29 21.45 0.28 -56.33 16 9 Si 0.96 44.69 29.54 68.60 2.03 46.72 16 10 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 11 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 12 H -0.26 -11.59 7.11 99.48 0.71 -10.89 16 13 C 0.10 3.33 4.18 85.56 0.36 3.69 16 14 C -0.16 -5.37 4.76 -19.73 -0.09 -5.46 16 15 C -0.06 -2.21 9.01 22.25 0.20 -2.01 16 16 C -0.18 -5.85 9.83 22.32 0.22 -5.63 16 17 C 0.01 0.18 6.32 22.31 0.14 0.32 16 18 Cl -0.07 -1.90 28.95 -2.72 -0.08 -1.98 16 19 C -0.20 -5.81 9.68 22.42 0.22 -5.59 16 20 C 0.25 7.58 6.73 38.21 0.26 7.83 16 21 N -0.85 -20.74 9.00 -51.38 -0.46 -21.21 16 22 H 0.06 1.51 8.03 -2.39 -0.02 1.50 16 23 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 24 H 0.06 1.33 6.15 -2.38 -0.01 1.31 16 25 H 0.06 2.44 6.59 -2.39 -0.02 2.42 16 26 H 0.02 0.66 8.06 -2.39 -0.02 0.64 16 27 H 0.01 0.50 6.84 -2.38 -0.02 0.49 16 28 H -0.04 -2.56 8.12 -2.39 -0.02 -2.58 16 29 H 0.26 15.03 8.31 -92.71 -0.77 14.26 16 30 H 0.09 2.60 5.45 -2.39 -0.01 2.59 16 31 H 0.03 0.93 7.82 -2.38 -0.02 0.91 16 32 H 0.12 4.18 7.99 -2.91 -0.02 4.15 16 33 H 0.13 3.87 8.06 -2.91 -0.02 3.84 16 34 H 0.15 3.45 8.06 -2.91 -0.02 3.43 16 35 H 0.40 9.60 5.51 -92.71 -0.51 9.09 16 36 H 0.41 7.60 8.85 -92.70 -0.82 6.78 16 Total: -1.00 -64.70 308.94 1.13 -63.57 By element: Atomic # 1 Polarization: 18.89 SS G_CDS: -0.23 Total: 18.67 kcal Atomic # 6 Polarization: -27.73 SS G_CDS: 3.49 Total: -24.24 kcal Atomic # 7 Polarization: -98.66 SS G_CDS: -4.08 Total: -102.73 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.72 kcal Atomic # 17 Polarization: -1.90 SS G_CDS: -0.08 Total: -1.98 kcal Total: -64.70 1.13 -63.57 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050443150.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.452 kcal (2) G-P(sol) polarization free energy of solvation -64.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds