Wall clock time and date at job start Mon Mar 30 2020 07:33:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30899 * 1 3 3 Si 1.86793 * 120.00398 * 2 1 4 4 H 1.48508 * 109.47085 * 240.00316 * 3 2 1 5 5 H 1.48498 * 109.46963 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47464 * 120.00362 * 3 2 1 7 7 C 1.39872 * 119.99337 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99450 * 197.94528 * 7 2 1 9 9 C 1.41132 * 120.00178 * 17.95025 * 7 2 1 10 10 C 1.40889 * 120.15202 * 204.59743 * 9 7 2 11 11 C 1.36340 * 119.83499 * 180.02562 * 10 9 7 12 12 C 1.39567 * 120.16150 * 0.02562 * 11 10 9 13 13 N 1.38858 * 119.84547 * 179.97438 * 12 11 10 14 14 C 1.46494 * 120.00466 * 180.02562 * 13 12 11 15 15 C 1.52997 * 109.47218 * 180.02562 * 14 13 12 16 16 C 1.50701 * 109.46821 * 179.97438 * 15 14 13 17 17 C 1.38228 * 119.61706 * 125.02014 * 16 15 14 18 18 C 1.38631 * 119.15874 * 179.97438 * 17 16 15 19 19 C 1.38669 * 118.42308 * 0.02562 * 18 17 16 20 20 C 1.38179 * 119.16160 * 359.97438 * 19 18 17 21 21 N 1.31849 * 119.62058 * 304.99700 * 16 15 14 22 22 C 1.39565 * 120.31537 * 0.25501 * 12 11 10 23 23 C 1.36342 * 120.16020 * 359.47941 * 22 12 11 24 24 H 0.96998 * 119.99932 * 359.97438 * 1 2 3 25 25 H 1.07999 * 120.08600 * 0.02562 * 10 9 7 26 26 H 1.08001 * 119.91773 * 179.97438 * 11 10 9 27 27 H 0.97001 * 119.99180 * 0.02562 * 13 12 11 28 28 H 1.08998 * 109.47215 * 59.99615 * 14 13 12 29 29 H 1.09004 * 109.46652 * 300.00150 * 14 13 12 30 30 H 1.09000 * 109.47445 * 60.00267 * 15 14 13 31 31 H 1.09004 * 109.47139 * 299.99493 * 15 14 13 32 32 H 1.07997 * 120.42103 * 359.95623 * 17 16 15 33 33 H 1.08002 * 120.78991 * 180.02562 * 18 17 16 34 34 H 1.08001 * 120.41791 * 179.97438 * 19 18 17 35 35 H 1.08008 * 119.61665 * 180.28022 * 20 19 18 36 36 H 1.08002 * 119.92282 * 179.72651 * 22 12 11 37 37 H 1.07999 * 120.08199 * 180.24208 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2431 1.6176 0.0000 4 1 3.0968 1.6962 -1.2126 5 1 1.2781 2.7464 0.0006 6 1 3.0969 1.6963 1.2124 7 6 2.0082 -1.2114 -0.0005 8 1 3.0488 -1.2343 0.2876 9 6 1.3540 -2.4037 -0.3778 10 6 1.8265 -3.6474 0.0859 11 6 1.1898 -4.7952 -0.2829 12 6 0.0730 -4.7402 -1.1181 13 7 -0.5701 -5.9134 -1.4901 14 6 -1.7423 -5.8598 -2.3671 15 6 -2.2557 -7.2788 -2.6195 16 6 -3.4620 -7.2236 -3.5211 17 6 -3.4735 -7.9575 -4.6924 18 6 -4.5883 -7.9001 -5.5145 19 6 -5.6543 -7.1027 -5.1264 20 6 -5.5708 -6.3971 -3.9412 21 7 -4.4943 -6.4761 -3.1835 22 6 -0.3971 -3.5122 -1.5860 23 6 0.2263 -2.3560 -1.2209 24 1 -0.4850 0.8400 0.0004 25 1 2.6908 -3.6914 0.7319 26 1 1.5511 -5.7493 0.0714 27 1 -0.2430 -6.7683 -1.1693 28 1 -1.4659 -5.3989 -3.3154 29 1 -2.5255 -5.2697 -1.8910 30 1 -2.5323 -7.7392 -1.6710 31 1 -1.4727 -7.8692 -3.0954 32 1 -2.6248 -8.5678 -4.9638 33 1 -4.6257 -8.4632 -6.4354 34 1 -6.5385 -7.0339 -5.7426 35 1 -6.3986 -5.7773 -3.6296 36 1 -1.2592 -3.4774 -2.2356 37 1 -0.1409 -1.4061 -1.5806 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000051601184.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:33:50 Heat of formation + Delta-G solvation = 51.779884 kcal Electronic energy + Delta-G solvation = -18525.597605 eV Core-core repulsion = 15653.022278 eV Total energy + Delta-G solvation = -2872.575327 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.127 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.34810 -37.91882 -35.57557 -33.61350 -32.59627 -32.21143 -29.52623 -29.37894 -27.69103 -24.65625 -23.77590 -23.22428 -21.78669 -20.64444 -19.79803 -17.14547 -17.07079 -16.46122 -16.04260 -15.51061 -14.99070 -14.87956 -14.45445 -13.89039 -13.71703 -13.48492 -13.10640 -12.68497 -12.44119 -12.09017 -11.97356 -11.82702 -11.55883 -11.32968 -10.99707 -10.96650 -10.75337 -10.39352 -10.04764 -9.65784 -9.52215 -9.22056 -9.15812 -9.11046 -8.45987 -7.42572 -6.58400 -6.32435 -3.97503 0.93150 1.11037 2.98133 3.16247 3.18024 3.21026 3.41704 3.62438 4.07084 4.09945 4.33258 4.64546 4.76935 4.82635 4.87480 4.93923 5.26742 5.28683 5.37935 5.54095 5.71336 5.87497 5.92021 5.97876 6.22148 6.33197 6.34258 6.42032 6.53718 6.99938 7.01166 7.26210 7.41830 7.61492 7.75537 7.87783 7.91189 8.21240 8.35290 8.55416 8.77405 8.86489 9.11742 9.21616 10.43226 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.029762 B = 0.003336 C = 0.003080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.579608 B = 8392.471909 C = 9088.797728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.807 5.807 2 C 0.074 3.926 3 Si 0.903 3.097 4 H -0.266 1.266 5 H -0.281 1.281 6 H -0.268 1.268 7 C -0.468 4.468 8 H 0.072 0.928 9 C 0.074 3.926 10 C -0.188 4.188 11 C -0.159 4.159 12 C 0.093 3.907 13 N -0.764 5.764 14 C 0.149 3.851 15 C -0.081 4.081 16 C 0.140 3.860 17 C -0.171 4.171 18 C -0.075 4.075 19 C -0.183 4.183 20 C 0.104 3.896 21 N -0.477 5.477 22 C -0.163 4.163 23 C -0.124 4.124 24 H 0.276 0.724 25 H 0.091 0.909 26 H 0.086 0.914 27 H 0.383 0.617 28 H 0.043 0.957 29 H 0.060 0.940 30 H 0.086 0.914 31 H 0.081 0.919 32 H 0.134 0.866 33 H 0.133 0.867 34 H 0.133 0.867 35 H 0.156 0.844 36 H 0.088 0.912 37 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.106 -13.219 -9.516 18.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.435 5.435 2 C -0.141 4.141 3 Si 0.728 3.272 4 H -0.191 1.191 5 H -0.206 1.206 6 H -0.193 1.193 7 C -0.500 4.500 8 H 0.090 0.910 9 C 0.071 3.929 10 C -0.208 4.208 11 C -0.182 4.182 12 C -0.004 4.004 13 N -0.400 5.400 14 C 0.023 3.977 15 C -0.119 4.119 16 C 0.002 3.998 17 C -0.191 4.191 18 C -0.101 4.101 19 C -0.203 4.203 20 C -0.054 4.054 21 N -0.186 5.186 22 C -0.185 4.185 23 C -0.144 4.144 24 H 0.087 0.913 25 H 0.109 0.891 26 H 0.104 0.896 27 H 0.215 0.785 28 H 0.061 0.939 29 H 0.078 0.922 30 H 0.105 0.895 31 H 0.100 0.900 32 H 0.152 0.848 33 H 0.151 0.849 34 H 0.151 0.849 35 H 0.173 0.827 36 H 0.106 0.894 37 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -9.409 -12.470 -8.831 17.945 hybrid contribution 0.277 -0.011 -0.718 0.770 sum -9.132 -12.481 -9.550 18.176 Atomic orbital electron populations 1.69853 1.07344 1.28663 1.37618 1.25793 0.94647 1.00838 0.92781 0.86468 0.80122 0.80914 0.79688 1.19125 1.20616 1.19305 1.19328 0.97876 0.91408 1.41339 0.91017 1.17484 0.92441 0.91977 0.90959 1.20537 1.02724 0.92630 1.04912 1.19798 0.97936 0.97041 1.03376 1.17337 0.95658 0.85650 1.01749 1.43838 1.32955 1.05848 1.57317 1.20853 0.88672 0.94093 0.94070 1.20729 0.93077 0.99149 0.98921 1.21174 0.93928 0.91619 0.93116 1.22008 0.99663 1.01682 0.95729 1.21573 0.92904 0.96657 0.98978 1.22135 1.00062 0.99289 0.98829 1.22811 0.95501 0.96257 0.90784 1.67529 1.00301 1.17619 1.33132 1.20112 1.01583 0.91956 1.04826 1.20930 0.98208 0.96408 0.98875 0.91303 0.89082 0.89614 0.78489 0.93871 0.92191 0.89545 0.90030 0.84786 0.84949 0.84929 0.82697 0.89427 0.86439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -22.00 10.96 55.54 0.61 -21.39 16 2 C 0.07 1.97 5.13 -17.34 -0.09 1.88 16 3 Si 0.90 19.64 29.60 -169.99 -5.03 14.61 16 4 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 5 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 6 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 7 C -0.47 -13.03 9.03 -37.87 -0.34 -13.37 16 8 H 0.07 1.92 7.91 -52.49 -0.41 1.50 16 9 C 0.07 2.07 5.57 -106.80 -0.60 1.47 16 10 C -0.19 -4.78 9.74 -39.26 -0.38 -5.16 16 11 C -0.16 -3.68 9.82 -39.77 -0.39 -4.07 16 12 C 0.09 2.11 6.67 -83.69 -0.56 1.55 16 13 N -0.76 -13.78 5.70 -58.50 -0.33 -14.11 16 14 C 0.15 2.39 4.75 -4.05 -0.02 2.37 16 15 C -0.08 -0.97 5.73 -27.88 -0.16 -1.13 16 16 C 0.14 1.71 6.18 -82.59 -0.51 1.20 16 17 C -0.17 -1.68 9.71 -39.44 -0.38 -2.06 16 18 C -0.08 -0.64 10.18 -39.28 -0.40 -1.04 16 19 C -0.18 -1.58 10.11 -39.44 -0.40 -1.98 16 20 C 0.10 1.11 11.18 -17.55 -0.20 0.91 16 21 N -0.48 -6.43 9.88 -9.47 -0.09 -6.52 16 22 C -0.16 -4.01 9.23 -39.77 -0.37 -4.37 16 23 C -0.12 -3.38 8.64 -39.26 -0.34 -3.72 16 24 H 0.28 6.91 8.30 -40.82 -0.34 6.57 16 25 H 0.09 2.18 8.06 -52.49 -0.42 1.76 16 26 H 0.09 1.73 8.06 -52.49 -0.42 1.31 16 27 H 0.38 5.96 8.47 -40.82 -0.35 5.61 16 28 H 0.04 0.73 7.92 -51.93 -0.41 0.32 16 29 H 0.06 1.09 7.74 -51.93 -0.40 0.69 16 30 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.08 0.82 7.87 -51.93 -0.41 0.41 16 32 H 0.13 1.02 7.95 -52.49 -0.42 0.60 16 33 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 34 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 35 H 0.16 1.28 8.06 -52.48 -0.42 0.85 16 36 H 0.09 2.02 6.68 -52.49 -0.35 1.67 16 37 H 0.12 3.31 6.16 -52.49 -0.32 2.98 16 LS Contribution 316.55 15.07 4.77 4.77 Total: -1.00 -30.90 316.55 -9.95 -40.85 By element: Atomic # 1 Polarization: 14.06 SS G_CDS: -4.75 Total: 9.31 kcal Atomic # 6 Polarization: -22.38 SS G_CDS: -5.13 Total: -27.51 kcal Atomic # 7 Polarization: -42.21 SS G_CDS: 0.18 Total: -42.03 kcal Atomic # 14 Polarization: 19.64 SS G_CDS: -5.03 Total: 14.61 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -30.90 -9.95 -40.85 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051601184.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.634 kcal (2) G-P(sol) polarization free energy of solvation -30.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.854 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds