Wall clock time and date at job start Mon Mar 30 2020 07:33:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30899 * 1 3 3 Si 1.86793 * 120.00398 * 2 1 4 4 H 1.48508 * 109.47085 * 240.00316 * 3 2 1 5 5 H 1.48498 * 109.46963 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47464 * 120.00362 * 3 2 1 7 7 C 1.39872 * 119.99337 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99450 * 197.94528 * 7 2 1 9 9 C 1.41132 * 120.00178 * 17.95025 * 7 2 1 10 10 C 1.40889 * 120.15202 * 204.59743 * 9 7 2 11 11 C 1.36340 * 119.83499 * 180.02562 * 10 9 7 12 12 C 1.39567 * 120.16150 * 0.02562 * 11 10 9 13 13 N 1.38858 * 119.84547 * 179.97438 * 12 11 10 14 14 C 1.46494 * 120.00466 * 180.02562 * 13 12 11 15 15 C 1.52997 * 109.47218 * 180.02562 * 14 13 12 16 16 C 1.50701 * 109.46821 * 179.97438 * 15 14 13 17 17 C 1.38228 * 119.61706 * 125.02014 * 16 15 14 18 18 C 1.38631 * 119.15874 * 179.97438 * 17 16 15 19 19 C 1.38669 * 118.42308 * 0.02562 * 18 17 16 20 20 C 1.38179 * 119.16160 * 359.97438 * 19 18 17 21 21 N 1.31849 * 119.62058 * 304.99700 * 16 15 14 22 22 C 1.39565 * 120.31537 * 0.25501 * 12 11 10 23 23 C 1.36342 * 120.16020 * 359.47941 * 22 12 11 24 24 H 0.96998 * 119.99932 * 359.97438 * 1 2 3 25 25 H 1.07999 * 120.08600 * 0.02562 * 10 9 7 26 26 H 1.08001 * 119.91773 * 179.97438 * 11 10 9 27 27 H 0.97001 * 119.99180 * 0.02562 * 13 12 11 28 28 H 1.08998 * 109.47215 * 59.99615 * 14 13 12 29 29 H 1.09004 * 109.46652 * 300.00150 * 14 13 12 30 30 H 1.09000 * 109.47445 * 60.00267 * 15 14 13 31 31 H 1.09004 * 109.47139 * 299.99493 * 15 14 13 32 32 H 1.07997 * 120.42103 * 359.95623 * 17 16 15 33 33 H 1.08002 * 120.78991 * 180.02562 * 18 17 16 34 34 H 1.08001 * 120.41791 * 179.97438 * 19 18 17 35 35 H 1.08008 * 119.61665 * 180.28022 * 20 19 18 36 36 H 1.08002 * 119.92282 * 179.72651 * 22 12 11 37 37 H 1.07999 * 120.08199 * 180.24208 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2431 1.6176 0.0000 4 1 3.0968 1.6962 -1.2126 5 1 1.2781 2.7464 0.0006 6 1 3.0969 1.6963 1.2124 7 6 2.0082 -1.2114 -0.0005 8 1 3.0488 -1.2343 0.2876 9 6 1.3540 -2.4037 -0.3778 10 6 1.8265 -3.6474 0.0859 11 6 1.1898 -4.7952 -0.2829 12 6 0.0730 -4.7402 -1.1181 13 7 -0.5701 -5.9134 -1.4901 14 6 -1.7423 -5.8598 -2.3671 15 6 -2.2557 -7.2788 -2.6195 16 6 -3.4620 -7.2236 -3.5211 17 6 -3.4735 -7.9575 -4.6924 18 6 -4.5883 -7.9001 -5.5145 19 6 -5.6543 -7.1027 -5.1264 20 6 -5.5708 -6.3971 -3.9412 21 7 -4.4943 -6.4761 -3.1835 22 6 -0.3971 -3.5122 -1.5860 23 6 0.2263 -2.3560 -1.2209 24 1 -0.4850 0.8400 0.0004 25 1 2.6908 -3.6914 0.7319 26 1 1.5511 -5.7493 0.0714 27 1 -0.2430 -6.7683 -1.1693 28 1 -1.4659 -5.3989 -3.3154 29 1 -2.5255 -5.2697 -1.8910 30 1 -2.5323 -7.7392 -1.6710 31 1 -1.4727 -7.8692 -3.0954 32 1 -2.6248 -8.5678 -4.9638 33 1 -4.6257 -8.4632 -6.4354 34 1 -6.5385 -7.0339 -5.7426 35 1 -6.3986 -5.7773 -3.6296 36 1 -1.2592 -3.4774 -2.2356 37 1 -0.1409 -1.4061 -1.5806 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000051601184.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:33:49 Heat of formation + Delta-G solvation = 34.038684 kcal Electronic energy + Delta-G solvation = -18526.366921 eV Core-core repulsion = 15653.022278 eV Total energy + Delta-G solvation = -2873.344643 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.127 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.12394 -39.75896 -37.12330 -35.24803 -33.73778 -33.20010 -31.35646 -30.99093 -29.17261 -26.29696 -24.92800 -24.27939 -23.13940 -22.21381 -21.56280 -19.14757 -18.08077 -17.56346 -17.11820 -16.82813 -16.52134 -16.12445 -15.75412 -15.58742 -14.86888 -14.60050 -14.40618 -14.13359 -13.90370 -13.77951 -13.61635 -13.25543 -12.76346 -12.73467 -12.66968 -12.49845 -12.33255 -12.17906 -11.58184 -11.18170 -11.05477 -10.78900 -10.36107 -10.25631 -9.88469 -9.41093 -8.54537 -8.17360 -6.00768 0.18372 0.40188 1.11190 1.18735 1.40016 1.51506 1.60385 2.27712 2.75801 2.84810 2.94832 3.43799 3.84476 3.87171 4.02807 4.14721 4.21459 4.27420 4.36724 4.42493 4.51826 4.56108 4.76429 4.87150 4.99864 5.01794 5.08274 5.14885 5.27971 5.29433 5.29766 5.45696 5.67249 5.80785 5.82997 5.96656 6.18922 6.38306 6.65707 6.85733 7.08337 7.10284 7.15687 7.34409 8.48868 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.029762 B = 0.003336 C = 0.003080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.579608 B = 8392.471909 C = 9088.797728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.843 5.843 2 C 0.030 3.970 3 Si 0.979 3.021 4 H -0.263 1.263 5 H -0.271 1.271 6 H -0.260 1.260 7 C -0.506 4.506 8 H 0.070 0.930 9 C 0.036 3.964 10 C -0.195 4.195 11 C -0.162 4.162 12 C 0.109 3.891 13 N -0.750 5.750 14 C 0.153 3.847 15 C -0.067 4.067 16 C 0.110 3.890 17 C -0.171 4.171 18 C -0.076 4.076 19 C -0.176 4.176 20 C 0.080 3.920 21 N -0.519 5.519 22 C -0.177 4.177 23 C -0.145 4.145 24 H 0.282 0.718 25 H 0.101 0.899 26 H 0.123 0.877 27 H 0.400 0.600 28 H 0.033 0.967 29 H 0.034 0.966 30 H 0.088 0.912 31 H 0.107 0.893 32 H 0.158 0.842 33 H 0.166 0.834 34 H 0.163 0.837 35 H 0.168 0.832 36 H 0.095 0.905 37 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.251 -15.094 -10.776 20.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.471 5.471 2 C -0.182 4.182 3 Si 0.800 3.200 4 H -0.187 1.187 5 H -0.195 1.195 6 H -0.185 1.185 7 C -0.538 4.538 8 H 0.089 0.911 9 C 0.033 3.967 10 C -0.215 4.215 11 C -0.184 4.184 12 C 0.010 3.990 13 N -0.386 5.386 14 C 0.027 3.973 15 C -0.105 4.105 16 C -0.027 4.027 17 C -0.191 4.191 18 C -0.102 4.102 19 C -0.195 4.195 20 C -0.076 4.076 21 N -0.229 5.229 22 C -0.199 4.199 23 C -0.165 4.165 24 H 0.092 0.908 25 H 0.119 0.881 26 H 0.141 0.859 27 H 0.235 0.765 28 H 0.051 0.949 29 H 0.052 0.948 30 H 0.107 0.893 31 H 0.126 0.874 32 H 0.175 0.825 33 H 0.184 0.816 34 H 0.181 0.819 35 H 0.185 0.815 36 H 0.113 0.887 37 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -9.568 -14.402 -10.095 20.021 hybrid contribution 0.198 0.388 -0.394 0.587 sum -9.370 -14.014 -10.489 19.855 Atomic orbital electron populations 1.69931 1.08884 1.29849 1.38445 1.26665 0.95446 1.04266 0.91819 0.85315 0.78711 0.76111 0.79860 1.18710 1.19549 1.18469 1.19585 0.98096 0.92720 1.43351 0.91150 1.17819 0.93435 0.93235 0.92216 1.20790 1.03129 0.92762 1.04844 1.20122 0.97552 0.97885 1.02839 1.17462 0.95062 0.86512 0.99993 1.43847 1.32817 1.05126 1.56808 1.20827 0.87015 0.96800 0.92615 1.20617 0.93953 0.96317 0.99653 1.21261 0.93855 0.93163 0.94454 1.22288 1.00946 1.01112 0.94732 1.22034 0.92106 0.96300 0.99782 1.22493 1.01158 0.97868 0.97995 1.23172 0.95375 0.97314 0.91781 1.67443 1.01573 1.18991 1.34873 1.20218 1.01942 0.92286 1.05454 1.20838 0.99145 0.96479 1.00070 0.90797 0.88129 0.85924 0.76492 0.94857 0.94774 0.89343 0.87423 0.82462 0.81623 0.81915 0.81522 0.88726 0.88529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -47.65 10.96 21.82 0.24 -47.41 16 2 C 0.03 1.62 5.13 85.23 0.44 2.05 16 3 Si 0.98 41.06 29.60 68.60 2.03 43.09 16 4 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 5 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 6 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 7 C -0.51 -29.16 9.03 23.38 0.21 -28.95 16 8 H 0.07 3.89 7.91 -2.91 -0.02 3.87 16 9 C 0.04 2.06 5.57 -21.27 -0.12 1.94 16 10 C -0.20 -10.00 9.74 22.48 0.22 -9.78 16 11 C -0.16 -7.26 9.82 22.15 0.22 -7.05 16 12 C 0.11 4.87 6.67 38.67 0.26 5.13 16 13 N -0.75 -25.82 5.70 -339.01 -1.93 -27.75 16 14 C 0.15 4.82 4.75 86.38 0.41 5.23 16 15 C -0.07 -1.52 5.73 29.85 0.17 -1.34 16 16 C 0.11 2.57 6.18 42.55 0.26 2.83 16 17 C -0.17 -2.91 9.71 22.36 0.22 -2.70 16 18 C -0.08 -1.05 10.18 22.47 0.23 -0.82 16 19 C -0.18 -2.58 10.11 22.36 0.23 -2.36 16 20 C 0.08 1.65 11.18 84.67 0.95 2.60 16 21 N -0.52 -13.91 9.88 -183.88 -1.82 -15.73 16 22 C -0.18 -8.90 9.23 22.15 0.20 -8.70 16 23 C -0.15 -8.24 8.64 22.47 0.19 -8.05 16 24 H 0.28 14.55 8.30 -92.71 -0.77 13.78 16 25 H 0.10 4.83 8.06 -2.91 -0.02 4.80 16 26 H 0.12 4.55 8.06 -2.91 -0.02 4.53 16 27 H 0.40 11.27 8.47 -92.71 -0.79 10.48 16 28 H 0.03 1.12 7.92 -2.39 -0.02 1.11 16 29 H 0.03 1.27 7.74 -2.38 -0.02 1.25 16 30 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 31 H 0.11 1.83 7.87 -2.38 -0.02 1.81 16 32 H 0.16 1.82 7.95 -2.91 -0.02 1.80 16 33 H 0.17 1.13 8.06 -2.91 -0.02 1.10 16 34 H 0.16 1.32 8.06 -2.91 -0.02 1.29 16 35 H 0.17 2.71 8.06 -2.91 -0.02 2.68 16 36 H 0.09 4.51 6.68 -2.91 -0.02 4.49 16 37 H 0.10 5.78 6.16 -2.91 -0.02 5.76 16 Total: -1.00 -69.91 316.55 2.90 -67.01 By element: Atomic # 1 Polarization: 30.45 SS G_CDS: 0.29 Total: 30.74 kcal Atomic # 6 Polarization: -54.04 SS G_CDS: 4.09 Total: -49.96 kcal Atomic # 7 Polarization: -87.38 SS G_CDS: -3.51 Total: -90.89 kcal Atomic # 14 Polarization: 41.06 SS G_CDS: 2.03 Total: 43.09 kcal Total: -69.91 2.90 -67.01 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051601184.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.052 kcal (2) G-P(sol) polarization free energy of solvation -69.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.013 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds