Wall clock time and date at job start Mon Mar 30 2020 06:41:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52991 * 109.47466 * 2 1 4 4 N 1.46903 * 109.47023 * 120.00496 * 2 1 3 5 5 C 1.46906 * 110.99753 * 306.63108 * 4 2 1 6 6 C 1.50702 * 109.46758 * 287.24192 * 5 4 2 7 7 H 1.07999 * 120.00711 * 357.60675 * 6 5 4 8 8 C 1.37877 * 119.99749 * 177.60842 * 6 5 4 9 9 N 1.31518 * 120.00014 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 120.00119 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.46810 * 90.00126 * 10 8 6 12 12 H 1.48502 * 109.47068 * 209.99813 * 10 8 6 13 13 H 1.48495 * 109.47003 * 330.00034 * 10 8 6 14 14 C 1.46900 * 111.00237 * 70.58365 * 4 2 1 15 15 C 1.50697 * 109.46743 * 74.73959 * 14 4 2 16 16 C 1.38714 * 120.78142 * 263.62477 * 15 14 4 17 17 C 1.38152 * 119.19502 * 180.02562 * 16 15 14 18 18 N 1.31908 * 120.77959 * 0.02833 * 17 16 15 19 19 C 1.31947 * 121.70576 * 359.67370 * 18 17 16 20 20 Cl 1.73605 * 119.63100 * 180.28927 * 19 18 17 21 21 C 1.38389 * 120.73219 * 0.59399 * 19 18 17 22 22 H 1.09000 * 109.47247 * 308.20280 * 1 2 3 23 23 H 1.09001 * 109.47153 * 68.19855 * 1 2 3 24 24 H 1.08998 * 109.47550 * 188.19995 * 1 2 3 25 25 H 1.09003 * 109.46744 * 239.99843 * 2 1 3 26 26 H 1.08998 * 109.47212 * 171.76730 * 3 2 1 27 27 H 1.09000 * 109.47331 * 291.77169 * 3 2 1 28 28 H 1.09002 * 109.47024 * 51.76115 * 3 2 1 29 29 H 1.09003 * 109.47227 * 47.23866 * 5 4 2 30 30 H 1.08993 * 109.46953 * 167.23923 * 5 4 2 31 31 H 0.96995 * 119.99856 * 180.02562 * 9 8 6 32 32 H 1.08995 * 109.47266 * 314.73942 * 14 4 2 33 33 H 1.08999 * 109.46786 * 194.73514 * 14 4 2 34 34 H 1.08003 * 120.40453 * 0.02562 * 16 15 14 35 35 H 1.08001 * 119.60685 * 180.02562 * 17 16 15 36 36 H 1.08005 * 120.42574 * 179.72442 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0196 -0.6926 1.1994 5 6 1.4236 -0.1241 2.4158 6 6 2.0306 1.2282 2.6878 7 1 2.8111 1.6089 2.0458 8 6 1.5893 1.9796 3.7563 9 7 0.6391 1.5159 4.5385 10 14 2.3422 3.6555 4.0939 11 1 1.5767 4.6980 3.3642 12 1 2.2939 3.9353 5.5516 13 1 3.7542 3.6655 3.6344 14 6 1.7653 -2.1369 1.1141 15 6 2.7388 -2.7621 0.1485 16 6 2.3818 -2.9887 -1.1727 17 6 3.2999 -3.5643 -2.0296 18 7 4.5033 -3.8978 -1.6046 19 6 4.8797 -3.6920 -0.3568 20 17 6.4793 -4.1451 0.1430 21 6 4.0114 -3.1248 0.5595 22 1 -0.3634 0.6355 0.8076 23 1 -0.3633 0.3817 -0.9542 24 1 -0.3634 -1.0171 0.1466 25 1 1.8933 -0.5139 -0.8900 26 1 3.1200 1.4459 0.1472 27 1 1.8018 1.9120 -0.9543 28 1 1.5615 1.9970 0.8072 29 1 0.3475 -0.0182 2.2779 30 1 1.6183 -0.7861 3.2594 31 1 0.3285 2.0446 5.2900 32 1 0.7470 -2.3065 0.7643 33 1 1.8909 -2.5867 2.0989 34 1 1.3980 -2.7184 -1.5271 35 1 3.0291 -3.7433 -3.0597 36 1 4.3233 -2.9626 1.5807 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000052709854.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:35 Heat of formation + Delta-G solvation = 18.445828 kcal Electronic energy + Delta-G solvation = -18441.863013 eV Core-core repulsion = 15565.409363 eV Total energy + Delta-G solvation = -2876.453649 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.104 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.33323 -39.35820 -37.61259 -34.99854 -34.26456 -32.07174 -31.91377 -29.60257 -27.84653 -26.61170 -24.57668 -24.04384 -22.96363 -20.30519 -18.57404 -17.74419 -17.62690 -16.88666 -16.73195 -16.50789 -15.76149 -15.29470 -15.01172 -14.87601 -14.69304 -14.08125 -13.54361 -13.28933 -13.08136 -13.01075 -12.74802 -12.66152 -12.54472 -12.51449 -12.34027 -12.24197 -11.98251 -11.84132 -11.32528 -10.89344 -10.66825 -10.61723 -10.46170 -9.93445 -8.91403 -8.11686 -6.13798 -0.03489 0.16440 0.82000 1.42016 1.44098 1.53770 2.43906 2.64038 3.21132 3.37121 3.50679 3.75883 3.93844 4.08796 4.09285 4.23519 4.37870 4.49349 4.56106 4.68606 4.74430 4.86662 4.90757 5.01058 5.06598 5.18255 5.27720 5.31164 5.37972 5.56514 5.61312 5.77309 5.80519 6.17300 6.45075 6.69666 6.72301 6.98003 7.50147 8.98620 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.021927 B = 0.005158 C = 0.004610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1276.644593 B = 5426.787076 C = 6072.553064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.088 3.912 3 C -0.142 4.142 4 N -0.535 5.535 5 C 0.202 3.798 6 C -0.503 4.503 7 H 0.075 0.925 8 C 0.002 3.998 9 N -0.936 5.936 10 Si 0.951 3.049 11 H -0.274 1.274 12 H -0.289 1.289 13 H -0.268 1.268 14 C 0.085 3.915 15 C -0.013 4.013 16 C -0.158 4.158 17 C 0.118 3.882 18 N -0.505 5.505 19 C 0.161 3.839 20 Cl -0.039 7.039 21 C -0.143 4.143 22 H 0.037 0.963 23 H 0.074 0.926 24 H 0.056 0.944 25 H 0.083 0.917 26 H 0.040 0.960 27 H 0.057 0.943 28 H 0.064 0.936 29 H -0.009 1.009 30 H -0.004 1.004 31 H 0.259 0.741 32 H 0.061 0.939 33 H 0.073 0.927 34 H 0.165 0.835 35 H 0.200 0.800 36 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.554 -9.094 -12.615 15.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.021 4.021 3 C -0.199 4.199 4 N -0.259 5.259 5 C 0.076 3.924 6 C -0.541 4.541 7 H 0.093 0.907 8 C -0.195 4.195 9 N -0.577 5.577 10 Si 0.777 3.223 11 H -0.200 1.200 12 H -0.215 1.215 13 H -0.193 1.193 14 C -0.043 4.043 15 C -0.021 4.021 16 C -0.178 4.178 17 C -0.039 4.039 18 N -0.217 5.217 19 C -0.002 4.002 20 Cl -0.010 7.010 21 C -0.164 4.164 22 H 0.056 0.944 23 H 0.093 0.907 24 H 0.075 0.925 25 H 0.101 0.899 26 H 0.059 0.941 27 H 0.076 0.924 28 H 0.083 0.917 29 H 0.009 0.991 30 H 0.014 0.986 31 H 0.068 0.932 32 H 0.079 0.921 33 H 0.092 0.908 34 H 0.183 0.817 35 H 0.216 0.784 36 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 3.709 -9.393 -12.948 16.421 hybrid contribution -0.957 1.096 1.489 2.082 sum 2.753 -8.297 -11.460 14.413 Atomic orbital electron populations 1.22340 0.97606 1.01369 1.01978 1.21565 0.92720 0.95383 0.92383 1.22128 1.00431 0.96195 1.01193 1.62262 1.59452 1.00712 1.03454 1.19522 0.92752 0.93987 0.86129 1.21726 1.19498 1.01928 1.10950 0.90741 1.25718 0.95899 1.01718 0.96170 1.70070 1.30393 1.39331 1.17948 0.85649 0.79143 0.80500 0.76985 1.20006 1.21469 1.19292 1.21087 0.95803 0.89538 0.97866 1.20316 0.93652 0.92956 0.95218 1.22444 1.02848 0.99763 0.92736 1.23192 0.86342 0.92888 1.01438 1.67011 1.20100 1.19295 1.15278 1.21643 0.88605 0.98823 0.91165 1.98384 1.21906 1.91137 1.89595 1.21762 0.93621 0.99784 1.01248 0.94424 0.90706 0.92479 0.89882 0.94096 0.92426 0.91713 0.99135 0.98564 0.93166 0.92064 0.90805 0.81733 0.78357 0.84314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.48 8.32 71.98 0.60 -4.88 16 2 C 0.09 2.94 2.83 44.91 0.13 3.07 16 3 C -0.14 -5.18 7.69 71.98 0.55 -4.63 16 4 N -0.53 -20.59 4.42 -880.08 -3.89 -24.48 16 5 C 0.20 9.81 4.48 85.56 0.38 10.19 16 6 C -0.50 -26.50 6.67 25.60 0.17 -26.33 16 7 H 0.07 3.87 5.37 -2.91 -0.02 3.86 16 8 C 0.00 0.12 5.46 84.65 0.46 0.58 16 9 N -0.94 -54.41 13.29 21.45 0.28 -54.13 16 10 Si 0.95 43.36 29.54 68.60 2.03 45.39 16 11 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 12 H -0.29 -13.13 7.11 99.48 0.71 -12.43 16 13 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 14 C 0.08 2.65 5.07 85.56 0.43 3.08 16 15 C -0.01 -0.34 5.01 -19.67 -0.10 -0.44 16 16 C -0.16 -3.31 8.55 22.36 0.19 -3.12 16 17 C 0.12 2.39 11.18 84.66 0.95 3.34 16 18 N -0.50 -13.36 10.34 -186.69 -1.93 -15.29 16 19 C 0.16 4.50 7.27 84.71 0.62 5.12 16 20 Cl -0.04 -1.01 29.11 -2.72 -0.08 -1.09 16 21 C -0.14 -4.09 9.61 22.38 0.22 -3.87 16 22 H 0.04 1.46 6.50 -2.39 -0.02 1.45 16 23 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 24 H 0.06 1.63 6.26 -2.39 -0.01 1.61 16 25 H 0.08 2.39 6.36 -2.39 -0.02 2.37 16 26 H 0.04 1.56 7.48 -2.39 -0.02 1.55 16 27 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 28 H 0.06 2.79 5.44 -2.39 -0.01 2.78 16 29 H -0.01 -0.47 5.69 -2.39 -0.01 -0.48 16 30 H 0.00 -0.20 7.68 -2.39 -0.02 -0.22 16 31 H 0.26 14.42 8.31 -92.71 -0.77 13.65 16 32 H 0.06 1.72 6.05 -2.39 -0.01 1.71 16 33 H 0.07 2.43 7.65 -2.39 -0.02 2.41 16 34 H 0.17 2.56 8.04 -2.91 -0.02 2.54 16 35 H 0.20 2.40 8.06 -2.91 -0.02 2.38 16 36 H 0.14 4.06 8.06 -2.91 -0.02 4.04 16 Total: -1.00 -61.37 303.38 2.10 -59.27 By element: Atomic # 1 Polarization: 7.13 SS G_CDS: 1.08 Total: 8.21 kcal Atomic # 6 Polarization: -22.50 SS G_CDS: 4.60 Total: -17.90 kcal Atomic # 7 Polarization: -88.36 SS G_CDS: -5.53 Total: -93.89 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.39 kcal Atomic # 17 Polarization: -1.01 SS G_CDS: -0.08 Total: -1.09 kcal Total: -61.37 2.10 -59.27 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052709854.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.720 kcal (2) G-P(sol) polarization free energy of solvation -61.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.275 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds