Wall clock time and date at job start Mon Mar 30 2020 06:57:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 120.00243 * 2 1 4 4 H 1.48497 * 109.46740 * 269.99519 * 3 2 1 5 5 H 1.48496 * 109.47141 * 29.99884 * 3 2 1 6 6 H 1.48495 * 109.47031 * 149.99858 * 3 2 1 7 7 C 1.37875 * 119.99379 * 179.97438 * 2 1 3 8 8 H 1.08010 * 119.99895 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00529 * 0.02562 * 7 2 1 10 10 N 1.46902 * 109.47478 * 175.20006 * 9 7 2 11 11 C 1.40197 * 110.99977 * 163.73051 * 10 9 7 12 12 C 1.39400 * 120.08704 * 238.13025 * 11 10 9 13 13 N 1.40158 * 120.06535 * 0.02562 * 12 11 10 14 14 C 1.38645 * 119.87292 * 180.27766 * 12 11 10 15 15 C 1.38315 * 120.05628 * 359.49511 * 14 12 11 16 16 C 1.38398 * 120.17359 * 0.50672 * 15 14 12 17 17 F 1.35102 * 119.93928 * 179.77136 * 16 15 14 18 18 C 1.38632 * 120.11990 * 359.74828 * 16 15 14 19 19 F 1.35103 * 120.02395 * 179.97438 * 18 16 15 20 20 C 1.46897 * 110.99818 * 287.68879 * 10 9 7 21 21 C 1.52992 * 117.49756 * 231.42846 * 20 10 9 22 22 C 1.52994 * 60.00229 * 252.50965 * 21 20 10 23 23 H 0.97007 * 119.99878 * 0.02562 * 1 2 3 24 24 H 1.09003 * 109.47018 * 55.19588 * 9 7 2 25 25 H 1.09005 * 109.46653 * 295.20046 * 9 7 2 26 26 H 0.97000 * 120.00033 * 0.02562 * 13 12 11 27 27 H 0.97002 * 120.00487 * 179.72436 * 13 12 11 28 28 H 1.07999 * 119.97059 * 179.72487 * 14 12 11 29 29 H 1.07995 * 119.91825 * 180.22975 * 15 14 12 30 30 H 1.08999 * 115.55436 * 17.13570 * 20 10 9 31 31 H 1.09001 * 117.50242 * 0.02562 * 21 20 10 32 32 H 1.09005 * 117.50348 * 145.02100 * 21 20 10 33 33 H 1.08997 * 117.50095 * 252.50679 * 22 21 20 34 34 H 1.09001 * 117.49767 * 107.48815 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0462 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 7 2.2012 -3.6134 -0.1147 11 6 1.5989 -4.8269 0.2461 12 6 2.1337 -5.5919 1.2815 13 7 3.2747 -5.1492 1.9645 14 6 1.5379 -6.7940 1.6308 15 6 0.4088 -7.2282 0.9602 16 6 -0.1240 -6.4705 -0.0681 17 9 -1.2243 -6.9014 -0.7230 18 6 0.4690 -5.2699 -0.4269 19 9 -0.0524 -4.5320 -1.4314 20 6 2.7639 -3.6873 -1.4696 21 6 2.7058 -5.0379 -2.1860 22 6 4.0412 -4.5077 -1.6604 23 1 -0.4850 0.8401 -0.0004 24 1 0.5615 -2.5207 -0.8436 25 1 0.6899 -2.5948 0.9303 26 1 3.6928 -4.3096 1.7172 27 1 3.6438 -5.6803 2.6875 28 1 1.9535 -7.3901 2.4298 29 1 -0.0557 -8.1632 1.2366 30 1 2.6469 -2.7898 -2.0770 31 1 2.2497 -5.8716 -1.6521 32 1 2.5504 -5.0293 -3.2648 33 1 4.7644 -4.1501 -2.3933 34 1 4.4640 -4.9925 -0.7804 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000053167015.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:07 Heat of formation + Delta-G solvation = -21.029147 kcal Electronic energy + Delta-G solvation = -21091.431497 eV Core-core repulsion = 17661.469404 eV Total energy + Delta-G solvation = -3429.962093 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.108 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -48.93181 -48.00952 -39.67548 -37.07258 -33.94512 -33.73051 -32.28371 -29.49314 -27.94093 -26.19978 -22.92939 -22.35179 -22.19823 -21.55827 -19.90989 -17.60029 -17.44701 -16.81283 -16.45057 -15.88939 -15.41432 -15.36452 -15.00932 -14.66840 -14.40270 -14.32208 -13.86242 -13.23781 -12.66399 -12.58688 -12.33398 -12.24229 -11.94686 -11.59819 -11.23212 -11.12346 -10.88508 -10.75280 -10.16392 -10.07497 -10.01555 -9.70469 -9.34424 -8.47597 -8.33266 -7.49493 -7.22221 -6.05137 -4.08217 1.30193 1.51319 3.29738 3.36154 3.39353 3.73579 3.99553 4.15933 4.41091 4.43449 4.64167 4.83639 4.99242 5.26490 5.27074 5.33726 5.48399 5.57095 5.79712 5.99071 6.03380 6.11999 6.23965 6.28482 6.33380 6.53018 6.59812 6.94259 7.15209 7.32860 7.60159 7.79538 7.94916 8.07605 8.09963 8.46084 8.99268 9.55817 11.05001 Molecular weight = 268.11amu Principal moments of inertia in cm(-1) A = 0.021047 B = 0.006775 C = 0.006365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.017421 B = 4131.876299 C = 4397.879194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.899 3.101 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.510 4.510 8 H 0.065 0.935 9 C 0.192 3.808 10 N -0.462 5.462 11 C 0.021 3.979 12 C 0.253 3.747 13 N -0.857 5.857 14 C -0.191 4.191 15 C -0.088 4.088 16 C -0.004 4.004 17 F -0.142 7.142 18 C 0.097 3.903 19 F -0.117 7.117 20 C 0.052 3.948 21 C -0.220 4.220 22 C -0.177 4.177 23 H 0.262 0.738 24 H 0.017 0.983 25 H 0.027 0.973 26 H 0.414 0.586 27 H 0.394 0.606 28 H 0.133 0.867 29 H 0.138 0.862 30 H 0.124 0.876 31 H 0.090 0.910 32 H 0.088 0.912 33 H 0.089 0.911 34 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.195 -13.464 1.887 14.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.145 4.145 3 Si 0.727 3.273 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.548 4.548 8 H 0.084 0.916 9 C 0.069 3.931 10 N -0.182 5.182 11 C -0.079 4.079 12 C 0.145 3.855 13 N -0.395 5.395 14 C -0.214 4.214 15 C -0.107 4.107 16 C -0.027 4.027 17 F -0.121 7.121 18 C 0.073 3.927 19 F -0.096 7.096 20 C -0.056 4.056 21 C -0.259 4.259 22 C -0.215 4.215 23 H 0.072 0.928 24 H 0.035 0.965 25 H 0.045 0.955 26 H 0.246 0.754 27 H 0.222 0.778 28 H 0.151 0.849 29 H 0.156 0.844 30 H 0.142 0.858 31 H 0.109 0.891 32 H 0.106 0.894 33 H 0.107 0.893 34 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 5.357 -13.164 2.155 14.374 hybrid contribution -0.349 0.950 -0.640 1.197 sum 5.008 -12.214 1.515 13.287 Atomic orbital electron populations 1.69974 1.06060 1.26883 1.50399 1.24990 0.94849 0.99301 0.95373 0.86479 0.79705 0.83039 0.78061 1.20711 1.21295 1.19800 1.21085 0.93557 0.89470 1.50711 0.91640 1.19975 0.89723 0.86121 0.97299 1.59678 1.35834 1.00410 1.22278 1.18395 0.94969 0.95707 0.98857 1.17413 0.87363 0.90967 0.89792 1.42515 1.29744 1.28000 1.39253 1.20301 0.99120 0.97204 1.04825 1.20634 0.96216 0.99624 0.94272 1.17396 0.89753 0.96008 0.99520 1.91451 1.50826 1.89562 1.80233 1.18325 0.95146 0.89967 0.89246 1.91539 1.85457 1.75519 1.57056 1.22632 0.98765 0.94375 0.89845 1.23495 1.02269 0.99736 1.00384 1.23004 0.91144 1.04829 1.02498 0.92821 0.96486 0.95474 0.75413 0.77817 0.84880 0.84438 0.85820 0.89127 0.89379 0.89251 0.89244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.50 13.29 55.43 0.74 -25.76 16 2 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 3 Si 0.90 21.33 29.54 -169.99 -5.02 16.31 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 6 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 7 C -0.51 -13.92 8.63 -34.44 -0.30 -14.22 16 8 H 0.07 1.75 7.81 -52.48 -0.41 1.34 16 9 C 0.19 4.95 4.01 -4.98 -0.02 4.93 16 10 N -0.46 -9.61 3.77 -164.65 -0.62 -10.23 16 11 C 0.02 0.40 3.36 -83.40 -0.28 0.12 16 12 C 0.25 3.87 6.78 -83.47 -0.57 3.30 16 13 N -0.86 -10.94 9.09 32.55 0.30 -10.64 16 14 C -0.19 -2.43 9.89 -39.40 -0.39 -2.82 16 15 C -0.09 -1.18 10.02 -39.49 -0.40 -1.58 16 16 C 0.00 -0.07 7.30 -39.38 -0.29 -0.36 16 17 F -0.14 -2.50 17.18 2.25 0.04 -2.46 16 18 C 0.10 1.88 4.86 -39.24 -0.19 1.69 16 19 F -0.12 -2.59 13.97 2.25 0.03 -2.55 16 20 C 0.05 1.01 5.12 -67.72 -0.35 0.66 16 21 C -0.22 -3.71 8.56 -26.74 -0.23 -3.94 16 22 C -0.18 -2.79 10.35 -26.73 -0.28 -3.06 16 23 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 24 H 0.02 0.49 6.47 -51.93 -0.34 0.15 16 25 H 0.03 0.77 7.97 -51.93 -0.41 0.35 16 26 H 0.41 5.93 8.11 -40.82 -0.33 5.60 16 27 H 0.39 3.62 8.85 -40.82 -0.36 3.26 16 28 H 0.13 1.24 8.06 -52.49 -0.42 0.81 16 29 H 0.14 1.43 8.06 -52.49 -0.42 1.00 16 30 H 0.12 2.64 7.61 -51.93 -0.40 2.24 16 31 H 0.09 1.57 5.52 -51.93 -0.29 1.28 16 32 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 33 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 34 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 LS Contribution 293.67 15.07 4.43 4.43 Total: -1.00 -30.14 293.67 -7.27 -37.41 By element: Atomic # 1 Polarization: 11.07 SS G_CDS: -3.78 Total: 7.29 kcal Atomic # 6 Polarization: -10.41 SS G_CDS: -3.38 Total: -13.79 kcal Atomic # 7 Polarization: -47.05 SS G_CDS: 0.41 Total: -46.64 kcal Atomic # 9 Polarization: -5.08 SS G_CDS: 0.07 Total: -5.01 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -30.14 -7.27 -37.41 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000053167015.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.382 kcal (2) G-P(sol) polarization free energy of solvation -30.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds