Wall clock time and date at job start Mon Mar 30 2020 06:57:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 120.00243 * 2 1 4 4 H 1.48497 * 109.46740 * 269.99519 * 3 2 1 5 5 H 1.48496 * 109.47141 * 29.99884 * 3 2 1 6 6 H 1.48495 * 109.47031 * 149.99858 * 3 2 1 7 7 C 1.37875 * 119.99379 * 179.97438 * 2 1 3 8 8 H 1.08010 * 119.99895 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00529 * 0.02562 * 7 2 1 10 10 N 1.46902 * 109.47478 * 175.20006 * 9 7 2 11 11 C 1.40197 * 110.99977 * 163.73051 * 10 9 7 12 12 C 1.39400 * 120.08704 * 238.13025 * 11 10 9 13 13 N 1.40158 * 120.06535 * 0.02562 * 12 11 10 14 14 C 1.38645 * 119.87292 * 180.27766 * 12 11 10 15 15 C 1.38315 * 120.05628 * 359.49511 * 14 12 11 16 16 C 1.38398 * 120.17359 * 0.50672 * 15 14 12 17 17 F 1.35102 * 119.93928 * 179.77136 * 16 15 14 18 18 C 1.38632 * 120.11990 * 359.74828 * 16 15 14 19 19 F 1.35103 * 120.02395 * 179.97438 * 18 16 15 20 20 C 1.46897 * 110.99818 * 287.68879 * 10 9 7 21 21 C 1.52992 * 117.49756 * 231.42846 * 20 10 9 22 22 C 1.52994 * 60.00229 * 252.50965 * 21 20 10 23 23 H 0.97007 * 119.99878 * 0.02562 * 1 2 3 24 24 H 1.09003 * 109.47018 * 55.19588 * 9 7 2 25 25 H 1.09005 * 109.46653 * 295.20046 * 9 7 2 26 26 H 0.97000 * 120.00033 * 0.02562 * 13 12 11 27 27 H 0.97002 * 120.00487 * 179.72436 * 13 12 11 28 28 H 1.07999 * 119.97059 * 179.72487 * 14 12 11 29 29 H 1.07995 * 119.91825 * 180.22975 * 15 14 12 30 30 H 1.08999 * 115.55436 * 17.13570 * 20 10 9 31 31 H 1.09001 * 117.50242 * 0.02562 * 21 20 10 32 32 H 1.09005 * 117.50348 * 145.02100 * 21 20 10 33 33 H 1.08997 * 117.50095 * 252.50679 * 22 21 20 34 34 H 1.09001 * 117.49767 * 107.48815 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0462 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 7 2.2012 -3.6134 -0.1147 11 6 1.5989 -4.8269 0.2461 12 6 2.1337 -5.5919 1.2815 13 7 3.2747 -5.1492 1.9645 14 6 1.5379 -6.7940 1.6308 15 6 0.4088 -7.2282 0.9602 16 6 -0.1240 -6.4705 -0.0681 17 9 -1.2243 -6.9014 -0.7230 18 6 0.4690 -5.2699 -0.4269 19 9 -0.0524 -4.5320 -1.4314 20 6 2.7639 -3.6873 -1.4696 21 6 2.7058 -5.0379 -2.1860 22 6 4.0412 -4.5077 -1.6604 23 1 -0.4850 0.8401 -0.0004 24 1 0.5615 -2.5207 -0.8436 25 1 0.6899 -2.5948 0.9303 26 1 3.6928 -4.3096 1.7172 27 1 3.6438 -5.6803 2.6875 28 1 1.9535 -7.3901 2.4298 29 1 -0.0557 -8.1632 1.2366 30 1 2.6469 -2.7898 -2.0770 31 1 2.2497 -5.8716 -1.6521 32 1 2.5504 -5.0293 -3.2648 33 1 4.7644 -4.1501 -2.3933 34 1 4.4640 -4.9925 -0.7804 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000053167015.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:06 Heat of formation + Delta-G solvation = -40.855344 kcal Electronic energy + Delta-G solvation = -21092.291225 eV Core-core repulsion = 17661.469404 eV Total energy + Delta-G solvation = -3430.821821 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.108 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -50.37825 -49.43811 -41.02193 -38.42480 -35.59895 -35.01191 -34.12271 -30.96847 -29.28460 -27.97235 -24.54437 -23.96820 -23.56742 -22.85343 -21.38082 -18.99336 -18.77241 -18.40813 -17.99227 -17.58872 -16.91438 -16.69493 -16.38401 -16.18626 -15.94269 -15.81957 -15.21335 -14.82645 -14.41446 -13.80611 -13.75620 -13.58209 -13.56117 -13.37667 -12.79976 -12.73081 -12.40614 -12.38449 -12.10026 -11.68694 -11.37667 -11.21522 -11.16191 -10.61752 -9.67205 -9.14078 -8.39839 -8.19547 -6.32235 0.04592 0.27506 1.40724 1.42300 1.53887 2.38078 2.52536 2.78240 2.84187 3.11107 3.16963 3.23642 3.56765 3.83611 3.92182 4.09066 4.13055 4.24932 4.59786 4.72204 4.77261 4.86438 4.97497 4.99651 5.09786 5.12031 5.18055 5.24816 5.28452 5.65786 5.78169 6.03468 6.15849 6.44012 6.73031 6.83639 7.12575 7.37396 8.90342 Molecular weight = 268.11amu Principal moments of inertia in cm(-1) A = 0.021047 B = 0.006775 C = 0.006365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.017421 B = 4131.876299 C = 4397.879194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.001 4.001 3 Si 0.974 3.026 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.259 1.259 7 C -0.518 4.518 8 H 0.070 0.930 9 C 0.214 3.786 10 N -0.450 5.450 11 C -0.016 4.016 12 C 0.255 3.745 13 N -0.844 5.844 14 C -0.168 4.168 15 C -0.067 4.067 16 C -0.025 4.025 17 F -0.151 7.151 18 C 0.062 3.938 19 F -0.147 7.147 20 C 0.013 3.987 21 C -0.209 4.209 22 C -0.140 4.140 23 H 0.263 0.737 24 H -0.023 1.023 25 H -0.009 1.009 26 H 0.408 0.592 27 H 0.415 0.585 28 H 0.184 0.816 29 H 0.179 0.821 30 H 0.091 0.909 31 H 0.089 0.911 32 H 0.094 0.906 33 H 0.111 0.889 34 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.596 -15.298 3.441 17.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.199 4.199 3 Si 0.798 3.202 4 H -0.201 1.201 5 H -0.210 1.210 6 H -0.183 1.183 7 C -0.556 4.556 8 H 0.088 0.912 9 C 0.089 3.911 10 N -0.169 5.169 11 C -0.116 4.116 12 C 0.144 3.856 13 N -0.382 5.382 14 C -0.191 4.191 15 C -0.087 4.087 16 C -0.048 4.048 17 F -0.130 7.130 18 C 0.039 3.961 19 F -0.126 7.126 20 C -0.095 4.095 21 C -0.248 4.248 22 C -0.178 4.178 23 H 0.072 0.928 24 H -0.005 1.005 25 H 0.009 0.991 26 H 0.238 0.762 27 H 0.246 0.754 28 H 0.201 0.799 29 H 0.196 0.804 30 H 0.109 0.891 31 H 0.107 0.893 32 H 0.112 0.888 33 H 0.129 0.871 34 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 7.802 -15.040 3.731 17.349 hybrid contribution -1.102 1.395 -1.079 2.080 sum 6.700 -13.645 2.651 15.430 Atomic orbital electron populations 1.70133 1.07988 1.27865 1.51693 1.25975 0.95670 1.03397 0.94814 0.85319 0.78638 0.77946 0.78312 1.20087 1.21030 1.18275 1.21404 0.93807 0.90368 1.50029 0.91182 1.19448 0.89699 0.88250 0.93664 1.59575 1.34029 1.00196 1.23105 1.18598 0.96134 0.95814 1.01085 1.17627 0.87890 0.91419 0.88620 1.42500 1.28670 1.27792 1.39243 1.20839 0.97760 0.95862 1.04652 1.21132 0.95621 1.00048 0.91862 1.17725 0.90059 0.96030 1.00994 1.91419 1.51365 1.89522 1.80714 1.18734 0.96457 0.91166 0.89702 1.91450 1.86068 1.76572 1.58520 1.22541 1.02668 0.94633 0.89625 1.23453 1.03050 0.97864 1.00429 1.23069 0.90113 1.01721 1.02885 0.92795 1.00547 0.99056 0.76186 0.75384 0.79898 0.80352 0.89065 0.89304 0.88790 0.87082 0.87929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.99 13.29 21.45 0.28 -57.70 16 2 C 0.00 -0.04 5.46 84.65 0.46 0.42 16 3 Si 0.97 44.48 29.54 68.60 2.03 46.51 16 4 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 5 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 6 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 7 C -0.52 -29.38 8.63 25.60 0.22 -29.16 16 8 H 0.07 3.82 7.81 -2.91 -0.02 3.79 16 9 C 0.21 11.80 4.01 85.56 0.34 12.14 16 10 N -0.45 -19.38 3.77 -674.83 -2.54 -21.92 16 11 C -0.02 -0.60 3.36 38.21 0.13 -0.48 16 12 C 0.25 7.19 6.78 38.19 0.26 7.44 16 13 N -0.84 -19.06 9.09 -50.93 -0.46 -19.52 16 14 C -0.17 -3.52 9.89 22.39 0.22 -3.29 16 15 C -0.07 -1.58 10.02 22.33 0.22 -1.36 16 16 C -0.03 -0.86 7.30 22.40 0.16 -0.69 16 17 F -0.15 -5.38 17.18 44.97 0.77 -4.61 16 18 C 0.06 2.51 4.86 22.49 0.11 2.62 16 19 F -0.15 -7.06 13.97 44.97 0.63 -6.43 16 20 C 0.01 0.54 5.12 44.91 0.23 0.77 16 21 C -0.21 -7.06 8.56 30.59 0.26 -6.80 16 22 C -0.14 -4.19 10.35 30.59 0.32 -3.87 16 23 H 0.26 15.35 8.31 -92.70 -0.77 14.58 16 24 H -0.02 -1.45 6.47 -2.39 -0.02 -1.47 16 25 H -0.01 -0.53 7.97 -2.38 -0.02 -0.54 16 26 H 0.41 10.87 8.11 -92.71 -0.75 10.12 16 27 H 0.41 5.85 8.85 -92.71 -0.82 5.02 16 28 H 0.18 2.08 8.06 -2.91 -0.02 2.06 16 29 H 0.18 2.74 8.06 -2.91 -0.02 2.71 16 30 H 0.09 4.17 7.61 -2.39 -0.02 4.16 16 31 H 0.09 3.07 5.52 -2.39 -0.01 3.05 16 32 H 0.09 2.99 8.14 -2.38 -0.02 2.97 16 33 H 0.11 2.85 8.14 -2.39 -0.02 2.83 16 34 H 0.10 2.82 8.14 -2.39 -0.02 2.80 16 Total: -1.00 -71.15 293.67 3.23 -67.91 By element: Atomic # 1 Polarization: 18.43 SS G_CDS: -0.42 Total: 18.02 kcal Atomic # 6 Polarization: -25.20 SS G_CDS: 2.94 Total: -22.26 kcal Atomic # 7 Polarization: -96.42 SS G_CDS: -2.72 Total: -99.14 kcal Atomic # 9 Polarization: -12.44 SS G_CDS: 1.40 Total: -11.04 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.51 kcal Total: -71.15 3.23 -67.91 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000053167015.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.059 kcal (2) G-P(sol) polarization free energy of solvation -71.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds