Wall clock time and date at job start Mon Mar 30 2020 07:40:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38149 * 119.97030 * 2 1 4 4 C 1.38152 * 120.15551 * 179.70083 * 3 2 1 5 5 C 1.39005 * 120.08118 * 0.55572 * 4 3 2 6 6 N 1.39675 * 120.03590 * 179.72099 * 5 4 3 7 7 C 1.38732 * 119.93092 * 359.44409 * 5 4 3 8 8 C 1.38856 * 119.84891 * 0.28054 * 7 5 4 9 9 N 1.39593 * 120.04339 * 179.97438 * 8 7 5 10 10 C 1.38814 * 119.99987 * 352.31874 * 9 8 7 11 11 C 1.39605 * 119.84314 * 318.09320 * 10 9 8 12 12 C 1.36323 * 120.15659 * 179.71755 * 11 10 9 13 13 C 1.40900 * 119.83608 * 0.55157 * 12 11 10 14 14 C 1.41103 * 120.15193 * 179.70065 * 13 12 11 15 15 H 1.08004 * 120.00224 * 213.84253 * 14 13 12 16 16 C 1.39852 * 120.00208 * 33.83975 * 14 13 12 17 17 N 1.30914 * 119.99558 * 358.38086 * 16 14 13 18 18 Si 1.86795 * 120.00301 * 178.38424 * 16 14 13 19 19 H 1.48505 * 109.47234 * 59.99641 * 18 16 14 20 20 H 1.48498 * 109.47500 * 180.02562 * 18 16 14 21 21 H 1.48507 * 109.47108 * 300.00129 * 18 16 14 22 22 C 1.40903 * 119.69430 * 359.72023 * 13 12 11 23 23 C 1.36302 * 119.84076 * 0.02562 * 22 13 12 24 24 H 1.08994 * 109.47296 * 270.02142 * 1 2 3 25 25 H 1.09009 * 109.46902 * 30.02028 * 1 2 3 26 26 H 1.08998 * 109.47439 * 150.01692 * 1 2 3 27 27 H 1.08007 * 119.92104 * 359.97438 * 3 2 1 28 28 H 1.07999 * 119.95787 * 180.29748 * 4 3 2 29 29 H 0.96998 * 119.99902 * 179.72421 * 6 5 4 30 30 H 0.97003 * 119.99313 * 359.44741 * 6 5 4 31 31 H 1.07998 * 120.07723 * 180.25324 * 7 5 4 32 32 H 0.96994 * 119.99875 * 172.31689 * 9 8 7 33 33 H 1.08002 * 119.92455 * 359.97438 * 11 10 9 34 34 H 1.07997 * 120.08141 * 180.29465 * 12 11 10 35 35 H 0.97000 * 119.99788 * 179.97438 * 17 16 14 36 36 H 1.08000 * 120.07885 * 179.97438 * 22 13 12 37 37 H 1.08008 * 119.92072 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1971 1.1968 0.0000 4 6 3.5786 1.2012 0.0062 5 6 4.2793 0.0007 0.0009 6 7 5.6760 0.0064 0.0013 7 6 3.5898 -1.2032 0.0009 8 6 2.2012 -1.2043 0.0004 9 7 1.5034 -2.4133 -0.0001 10 6 2.1883 -3.6100 -0.1608 11 6 3.2147 -3.7020 -1.1026 12 6 3.8953 -4.8723 -1.2617 13 6 3.5529 -5.9941 -0.4809 14 6 4.2488 -7.2107 -0.6446 15 1 3.7308 -8.1501 -0.5198 16 6 5.6092 -7.2000 -0.9684 17 7 6.2296 -6.0617 -1.1509 18 14 6.5411 -8.8097 -1.1406 19 1 5.9229 -9.6270 -2.2154 20 1 7.9576 -8.5273 -1.4855 21 1 6.4836 -9.5547 0.1428 22 6 2.5120 -5.8956 0.4637 23 6 1.8434 -4.7176 0.6158 24 1 -0.3633 0.0004 1.0276 25 1 -0.3633 0.8899 -0.5142 26 1 -0.3634 -0.8901 -0.5135 27 1 1.6553 2.1311 -0.0004 28 1 4.1149 2.1387 0.0111 29 1 6.1644 -0.8317 0.0016 30 1 6.1575 0.8484 -0.0028 31 1 4.1318 -2.1373 0.0009 32 1 0.5399 -2.4172 0.1118 33 1 3.4729 -2.8427 -1.7038 34 1 4.6922 -4.9407 -1.9873 35 1 7.1733 -6.0542 -1.3751 36 1 2.2441 -6.7517 1.0652 37 1 1.0451 -4.6408 1.3393 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000053735602.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:40:56 Heat of formation + Delta-G solvation = 42.838489 kcal Electronic energy + Delta-G solvation = -19419.115423 eV Core-core repulsion = 16546.152368 eV Total energy + Delta-G solvation = -2872.963055 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.127 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.56913 -37.72258 -35.55981 -34.15529 -32.86060 -30.53202 -29.79919 -29.39036 -28.09617 -25.40140 -24.67358 -22.01650 -21.49507 -20.39177 -20.03396 -17.37515 -17.14171 -16.80091 -15.73431 -15.24761 -14.96236 -14.36653 -14.00696 -13.81190 -13.47459 -13.18552 -13.02179 -12.70366 -12.30794 -12.06153 -11.97157 -11.79954 -11.48597 -11.21812 -11.06517 -10.99405 -10.67876 -10.57989 -10.31025 -9.84191 -9.65532 -9.28900 -9.13632 -7.73038 -7.55463 -7.08877 -6.65592 -6.45809 -4.33816 2.02580 2.12751 2.78638 2.99923 3.07040 3.09461 3.18411 3.94973 4.07677 4.37107 4.40007 4.68510 5.26214 5.48407 5.56556 5.63049 5.76381 5.88598 5.97688 6.14697 6.19747 6.25319 6.31604 6.35681 6.74658 6.87097 6.92889 6.97230 7.03973 7.07351 7.20326 7.28873 7.47902 7.57629 7.81872 7.90022 8.01508 8.13265 8.19309 8.35445 8.50330 8.63364 8.89344 8.96101 10.26556 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.025475 B = 0.004918 C = 0.004226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.856619 B = 5692.261383 C = 6624.310784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.228 4.228 3 C -0.036 4.036 4 C -0.260 4.260 5 C 0.249 3.751 6 N -0.880 5.880 7 C -0.263 4.263 8 C 0.261 3.739 9 N -0.668 5.668 10 C 0.026 3.974 11 C -0.120 4.120 12 C -0.137 4.137 13 C 0.097 3.903 14 C -0.462 4.462 15 H 0.075 0.925 16 C 0.070 3.930 17 N -0.812 5.812 18 Si 0.914 3.086 19 H -0.266 1.266 20 H -0.279 1.279 21 H -0.267 1.267 22 C -0.200 4.200 23 C -0.117 4.117 24 H 0.054 0.946 25 H 0.057 0.943 26 H 0.053 0.947 27 H 0.112 0.888 28 H 0.107 0.893 29 H 0.399 0.601 30 H 0.392 0.608 31 H 0.138 0.862 32 H 0.395 0.605 33 H 0.097 0.903 34 H 0.130 0.870 35 H 0.278 0.722 36 H 0.096 0.904 37 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.403 9.767 1.124 10.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.234 4.234 3 C -0.055 4.055 4 C -0.284 4.284 5 C 0.143 3.857 6 N -0.419 5.419 7 C -0.291 4.291 8 C 0.156 3.844 9 N -0.287 5.287 10 C -0.067 4.067 11 C -0.140 4.140 12 C -0.157 4.157 13 C 0.094 3.906 14 C -0.493 4.493 15 H 0.093 0.907 16 C -0.145 4.145 17 N -0.440 5.440 18 Si 0.739 3.261 19 H -0.191 1.191 20 H -0.204 1.204 21 H -0.191 1.191 22 C -0.220 4.220 23 C -0.138 4.138 24 H 0.073 0.927 25 H 0.076 0.924 26 H 0.072 0.928 27 H 0.130 0.870 28 H 0.125 0.875 29 H 0.227 0.773 30 H 0.219 0.781 31 H 0.155 0.845 32 H 0.230 0.770 33 H 0.115 0.885 34 H 0.147 0.853 35 H 0.089 0.911 36 H 0.114 0.886 37 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -3.119 9.701 1.045 10.244 hybrid contribution 0.617 -0.663 0.071 0.909 sum -2.501 9.038 1.116 9.444 Atomic orbital electron populations 1.20430 0.92233 1.01522 1.00873 1.19047 0.95127 0.91722 1.17466 1.20324 0.93160 0.96126 0.95919 1.20196 0.94181 0.95514 1.18559 1.17494 0.83579 0.93276 0.91316 1.42484 1.03505 1.10485 1.85386 1.20497 0.92836 0.97531 1.18204 1.17392 0.90780 0.85193 0.91049 1.41766 1.08024 1.02149 1.76771 1.17213 1.01504 0.85627 1.02399 1.20569 0.97944 0.97987 0.97524 1.21218 1.01049 0.92395 1.01065 1.17674 0.90236 0.93559 0.89099 1.19434 0.94022 0.93668 1.42166 0.90723 1.25850 0.98249 0.97771 0.92584 1.69773 1.11331 1.26497 1.36363 0.86268 0.78257 0.81880 0.79649 1.19051 1.20429 1.19145 1.20714 1.02613 0.96499 1.02172 1.20191 1.01005 0.93936 0.98662 0.92742 0.92403 0.92785 0.87019 0.87453 0.77291 0.78075 0.84467 0.76978 0.88480 0.85278 0.91115 0.88631 0.89200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.18 9.51 36.01 0.34 -0.84 16 2 C -0.23 -3.59 5.90 -104.37 -0.62 -4.21 16 3 C -0.04 -0.52 9.68 -39.65 -0.38 -0.91 16 4 C -0.26 -3.89 9.89 -39.33 -0.39 -4.28 16 5 C 0.25 4.09 6.75 -83.82 -0.57 3.52 16 6 N -0.88 -11.88 9.09 32.40 0.29 -11.59 16 7 C -0.26 -5.00 7.86 -39.17 -0.31 -5.31 16 8 C 0.26 4.78 6.39 -83.81 -0.54 4.24 16 9 N -0.67 -12.37 5.28 -8.32 -0.04 -12.41 16 10 C 0.03 0.57 5.87 -83.68 -0.49 0.08 16 11 C -0.12 -2.77 7.28 -39.76 -0.29 -3.06 16 12 C -0.14 -3.48 8.60 -39.26 -0.34 -3.82 16 13 C 0.10 2.52 5.55 -106.79 -0.59 1.93 16 14 C -0.46 -12.05 9.03 -37.89 -0.34 -12.39 16 15 H 0.07 1.87 7.84 -52.48 -0.41 1.46 16 16 C 0.07 1.75 5.40 -17.34 -0.09 1.65 16 17 N -0.81 -20.69 10.62 55.54 0.59 -20.10 16 18 Si 0.91 18.69 29.56 -169.99 -5.02 13.66 16 19 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 20 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 21 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 22 C -0.20 -4.77 9.74 -39.27 -0.38 -5.15 16 23 C -0.12 -2.57 9.90 -39.77 -0.39 -2.96 16 24 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 25 H 0.06 0.63 8.09 -51.92 -0.42 0.21 16 26 H 0.05 0.67 6.66 -51.93 -0.35 0.33 16 27 H 0.11 1.32 8.06 -52.48 -0.42 0.90 16 28 H 0.11 1.36 8.06 -52.49 -0.42 0.94 16 29 H 0.40 5.38 8.84 -40.82 -0.36 5.02 16 30 H 0.39 4.18 8.84 -40.82 -0.36 3.81 16 31 H 0.14 2.92 5.37 -52.49 -0.28 2.64 16 32 H 0.39 6.37 6.93 -40.82 -0.28 6.09 16 33 H 0.10 2.17 6.65 -52.49 -0.35 1.82 16 34 H 0.13 3.42 6.15 -52.49 -0.32 3.09 16 35 H 0.28 6.52 8.30 -40.82 -0.34 6.18 16 36 H 0.10 2.14 8.06 -52.49 -0.42 1.72 16 37 H 0.09 1.74 8.06 -52.48 -0.42 1.31 16 LS Contribution 307.27 15.07 4.63 4.63 Total: -1.00 -27.40 307.27 -9.32 -36.72 By element: Atomic # 1 Polarization: 24.97 SS G_CDS: -4.38 Total: 20.59 kcal Atomic # 6 Polarization: -26.13 SS G_CDS: -5.38 Total: -31.50 kcal Atomic # 7 Polarization: -44.94 SS G_CDS: 0.84 Total: -44.10 kcal Atomic # 14 Polarization: 18.69 SS G_CDS: -5.02 Total: 13.66 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -27.40 -9.32 -36.72 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000053735602.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.560 kcal (2) G-P(sol) polarization free energy of solvation -27.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.721 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds