Wall clock time and date at job start Mon Mar 30 2020 07:40:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38149 * 119.97030 * 2 1 4 4 C 1.38152 * 120.15551 * 179.70083 * 3 2 1 5 5 C 1.39005 * 120.08118 * 0.55572 * 4 3 2 6 6 N 1.39675 * 120.03590 * 179.72099 * 5 4 3 7 7 C 1.38732 * 119.93092 * 359.44409 * 5 4 3 8 8 C 1.38856 * 119.84891 * 0.28054 * 7 5 4 9 9 N 1.39593 * 120.04339 * 179.97438 * 8 7 5 10 10 C 1.38814 * 119.99987 * 352.31874 * 9 8 7 11 11 C 1.39605 * 119.84314 * 318.09320 * 10 9 8 12 12 C 1.36323 * 120.15659 * 179.71755 * 11 10 9 13 13 C 1.40900 * 119.83608 * 0.55157 * 12 11 10 14 14 C 1.41103 * 120.15193 * 179.70065 * 13 12 11 15 15 H 1.08004 * 120.00224 * 213.84253 * 14 13 12 16 16 C 1.39852 * 120.00208 * 33.83975 * 14 13 12 17 17 N 1.30914 * 119.99558 * 358.38086 * 16 14 13 18 18 Si 1.86795 * 120.00301 * 178.38424 * 16 14 13 19 19 H 1.48505 * 109.47234 * 59.99641 * 18 16 14 20 20 H 1.48498 * 109.47500 * 180.02562 * 18 16 14 21 21 H 1.48507 * 109.47108 * 300.00129 * 18 16 14 22 22 C 1.40903 * 119.69430 * 359.72023 * 13 12 11 23 23 C 1.36302 * 119.84076 * 0.02562 * 22 13 12 24 24 H 1.08994 * 109.47296 * 270.02142 * 1 2 3 25 25 H 1.09009 * 109.46902 * 30.02028 * 1 2 3 26 26 H 1.08998 * 109.47439 * 150.01692 * 1 2 3 27 27 H 1.08007 * 119.92104 * 359.97438 * 3 2 1 28 28 H 1.07999 * 119.95787 * 180.29748 * 4 3 2 29 29 H 0.96998 * 119.99902 * 179.72421 * 6 5 4 30 30 H 0.97003 * 119.99313 * 359.44741 * 6 5 4 31 31 H 1.07998 * 120.07723 * 180.25324 * 7 5 4 32 32 H 0.96994 * 119.99875 * 172.31689 * 9 8 7 33 33 H 1.08002 * 119.92455 * 359.97438 * 11 10 9 34 34 H 1.07997 * 120.08141 * 180.29465 * 12 11 10 35 35 H 0.97000 * 119.99788 * 179.97438 * 17 16 14 36 36 H 1.08000 * 120.07885 * 179.97438 * 22 13 12 37 37 H 1.08008 * 119.92072 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1971 1.1968 0.0000 4 6 3.5786 1.2012 0.0062 5 6 4.2793 0.0007 0.0009 6 7 5.6760 0.0064 0.0013 7 6 3.5898 -1.2032 0.0009 8 6 2.2012 -1.2043 0.0004 9 7 1.5034 -2.4133 -0.0001 10 6 2.1883 -3.6100 -0.1608 11 6 3.2147 -3.7020 -1.1026 12 6 3.8953 -4.8723 -1.2617 13 6 3.5529 -5.9941 -0.4809 14 6 4.2488 -7.2107 -0.6446 15 1 3.7308 -8.1501 -0.5198 16 6 5.6092 -7.2000 -0.9684 17 7 6.2296 -6.0617 -1.1509 18 14 6.5411 -8.8097 -1.1406 19 1 5.9229 -9.6270 -2.2154 20 1 7.9576 -8.5273 -1.4855 21 1 6.4836 -9.5547 0.1428 22 6 2.5120 -5.8956 0.4637 23 6 1.8434 -4.7176 0.6158 24 1 -0.3633 0.0004 1.0276 25 1 -0.3633 0.8899 -0.5142 26 1 -0.3634 -0.8901 -0.5135 27 1 1.6553 2.1311 -0.0004 28 1 4.1149 2.1387 0.0111 29 1 6.1644 -0.8317 0.0016 30 1 6.1575 0.8484 -0.0028 31 1 4.1318 -2.1373 0.0009 32 1 0.5399 -2.4172 0.1118 33 1 3.4729 -2.8427 -1.7038 34 1 4.6922 -4.9407 -1.9873 35 1 7.1733 -6.0542 -1.3751 36 1 2.2441 -6.7517 1.0652 37 1 1.0451 -4.6408 1.3393 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000053735602.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:40:56 Heat of formation + Delta-G solvation = 28.098195 kcal Electronic energy + Delta-G solvation = -19419.754610 eV Core-core repulsion = 16546.152368 eV Total energy + Delta-G solvation = -2873.602242 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.127 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.97403 -39.36356 -37.02999 -35.62351 -34.48881 -31.83868 -31.41943 -31.04685 -29.65872 -26.80448 -26.19017 -23.50939 -23.16276 -21.98840 -21.49727 -19.24479 -18.49228 -18.22465 -17.18507 -16.89665 -16.33203 -15.68131 -15.66286 -15.36242 -14.80117 -14.59541 -14.40941 -14.28449 -13.87002 -13.59974 -13.35919 -13.27769 -12.95991 -12.85344 -12.65821 -12.32014 -12.21349 -12.03629 -11.86212 -11.60312 -11.25565 -11.05457 -10.59132 -9.48134 -9.30557 -8.50631 -8.43574 -7.93147 -6.26430 0.64901 0.83069 1.08274 1.17186 1.39511 1.50472 1.54023 2.24150 2.67834 2.80531 3.15343 3.17462 3.69142 4.13482 4.35733 4.40225 4.43330 4.48379 4.63413 4.81804 4.91274 4.95623 5.01928 5.09041 5.14832 5.22334 5.30340 5.38892 5.49820 5.63343 5.67109 5.72797 5.85631 5.98231 6.08733 6.11819 6.31929 6.57242 6.69642 6.81265 6.98035 7.01300 7.09484 7.15330 8.43909 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.025475 B = 0.004918 C = 0.004226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.856619 B = 5692.261383 C = 6624.310784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C -0.229 4.229 3 C -0.034 4.034 4 C -0.257 4.257 5 C 0.239 3.761 6 N -0.872 5.872 7 C -0.293 4.293 8 C 0.237 3.763 9 N -0.667 5.667 10 C 0.046 3.954 11 C -0.121 4.121 12 C -0.155 4.155 13 C 0.063 3.937 14 C -0.499 4.499 15 H 0.074 0.926 16 C 0.028 3.972 17 N -0.844 5.844 18 Si 0.986 3.014 19 H -0.260 1.260 20 H -0.271 1.271 21 H -0.262 1.262 22 C -0.208 4.208 23 C -0.121 4.121 24 H 0.066 0.934 25 H 0.079 0.921 26 H 0.052 0.948 27 H 0.148 0.852 28 H 0.135 0.865 29 H 0.397 0.603 30 H 0.407 0.593 31 H 0.104 0.896 32 H 0.408 0.592 33 H 0.097 0.903 34 H 0.109 0.891 35 H 0.283 0.717 36 H 0.105 0.895 37 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.417 11.698 1.690 12.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.234 4.234 3 C -0.053 4.053 4 C -0.281 4.281 5 C 0.132 3.868 6 N -0.411 5.411 7 C -0.320 4.320 8 C 0.133 3.867 9 N -0.289 5.289 10 C -0.049 4.049 11 C -0.141 4.141 12 C -0.176 4.176 13 C 0.061 3.939 14 C -0.530 4.530 15 H 0.093 0.907 16 C -0.184 4.184 17 N -0.472 5.472 18 Si 0.807 3.193 19 H -0.185 1.185 20 H -0.195 1.195 21 H -0.187 1.187 22 C -0.228 4.228 23 C -0.142 4.142 24 H 0.085 0.915 25 H 0.098 0.902 26 H 0.071 0.929 27 H 0.166 0.834 28 H 0.153 0.847 29 H 0.225 0.775 30 H 0.237 0.763 31 H 0.122 0.878 32 H 0.245 0.755 33 H 0.115 0.885 34 H 0.127 0.873 35 H 0.093 0.907 36 H 0.123 0.877 37 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -4.138 11.688 1.617 12.504 hybrid contribution 0.869 -0.997 -0.072 1.324 sum -3.269 10.692 1.545 11.287 Atomic orbital electron populations 1.20489 0.89911 1.02574 1.01981 1.19437 0.96920 0.90980 1.16112 1.20795 0.93212 0.97138 0.94157 1.20584 0.94767 0.95805 1.16914 1.17674 0.84632 0.93172 0.91277 1.42465 1.02746 1.11291 1.84628 1.20420 0.93562 0.97252 1.20762 1.17642 0.90716 0.85851 0.92446 1.41619 1.08503 1.01276 1.77511 1.17270 1.00197 0.86832 1.00558 1.20562 0.98426 0.97124 0.97995 1.21093 1.01464 0.93500 1.01505 1.17979 0.91599 0.94027 0.90325 1.19684 0.95179 0.93764 1.44335 0.90748 1.26702 0.98655 1.01274 0.91749 1.69868 1.11770 1.28468 1.37115 0.85195 0.77011 0.77411 0.79696 1.18462 1.19530 1.18690 1.20914 1.02271 0.97717 1.01876 1.20475 1.01498 0.93192 0.98985 0.91506 0.90205 0.92931 0.83419 0.84674 0.77528 0.76301 0.87822 0.75459 0.88472 0.87330 0.90693 0.87658 0.86089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.01 9.51 71.24 0.68 -1.34 16 2 C -0.23 -6.58 5.90 -19.70 -0.12 -6.69 16 3 C -0.03 -0.86 9.68 22.23 0.22 -0.65 16 4 C -0.26 -6.89 9.89 22.43 0.22 -6.67 16 5 C 0.24 7.61 6.75 38.19 0.26 7.87 16 6 N -0.87 -22.95 9.09 -51.42 -0.47 -23.42 16 7 C -0.29 -11.19 7.86 22.54 0.18 -11.01 16 8 C 0.24 8.44 6.39 38.24 0.24 8.68 16 9 N -0.67 -24.13 5.28 -180.25 -0.95 -25.08 16 10 C 0.05 2.02 5.87 38.70 0.23 2.25 16 11 C -0.12 -5.79 7.28 22.15 0.16 -5.63 16 12 C -0.16 -8.33 8.60 22.47 0.19 -8.14 16 13 C 0.06 3.43 5.55 -21.27 -0.12 3.31 16 14 C -0.50 -27.12 9.03 23.36 0.21 -26.91 16 15 H 0.07 3.87 7.84 -2.91 -0.02 3.85 16 16 C 0.03 1.42 5.40 85.22 0.46 1.88 16 17 N -0.84 -44.94 10.62 21.81 0.23 -44.71 16 18 Si 0.99 39.09 29.56 68.60 2.03 41.12 16 19 H -0.26 -9.99 7.11 99.48 0.71 -9.28 16 20 H -0.27 -10.23 7.11 99.48 0.71 -9.53 16 21 H -0.26 -10.13 7.11 99.48 0.71 -9.43 16 22 C -0.21 -10.11 9.74 22.47 0.22 -9.90 16 23 C -0.12 -5.27 9.90 22.15 0.22 -5.05 16 24 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 25 H 0.08 1.39 8.09 -2.38 -0.02 1.37 16 26 H 0.05 1.16 6.66 -2.39 -0.02 1.14 16 27 H 0.15 2.69 8.06 -2.91 -0.02 2.66 16 28 H 0.14 2.85 8.06 -2.91 -0.02 2.83 16 29 H 0.40 10.91 8.84 -92.71 -0.82 10.10 16 30 H 0.41 8.00 8.84 -92.71 -0.82 7.18 16 31 H 0.10 4.64 5.37 -2.91 -0.02 4.62 16 32 H 0.41 12.45 6.93 -92.71 -0.64 11.80 16 33 H 0.10 4.57 6.65 -2.91 -0.02 4.55 16 34 H 0.11 6.17 6.15 -2.91 -0.02 6.15 16 35 H 0.28 13.77 8.30 -92.71 -0.77 13.00 16 36 H 0.11 4.78 8.06 -2.91 -0.02 4.76 16 37 H 0.12 4.45 8.06 -2.91 -0.02 4.43 16 Total: -1.00 -61.52 307.27 2.94 -58.58 By element: Atomic # 1 Polarization: 52.65 SS G_CDS: -1.15 Total: 51.49 kcal Atomic # 6 Polarization: -61.24 SS G_CDS: 3.25 Total: -57.99 kcal Atomic # 7 Polarization: -92.02 SS G_CDS: -1.19 Total: -93.21 kcal Atomic # 14 Polarization: 39.09 SS G_CDS: 2.03 Total: 41.12 kcal Total: -61.52 2.94 -58.58 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000053735602.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.682 kcal (2) G-P(sol) polarization free energy of solvation -61.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.583 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds