Wall clock time and date at job start Mon Mar 30 2020 07:31:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86805 * 120.00213 * 2 1 4 4 H 1.48502 * 109.46826 * 270.00094 * 3 2 1 5 5 H 1.48500 * 109.46821 * 29.99598 * 3 2 1 6 6 H 1.48493 * 109.47085 * 149.99838 * 3 2 1 7 7 C 1.37875 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00040 * 189.52751 * 7 2 1 9 9 C 1.50700 * 119.99925 * 9.52760 * 7 2 1 10 10 H 1.09004 * 109.46858 * 185.32049 * 9 7 2 11 11 N 1.46899 * 109.46855 * 305.31199 * 9 7 2 12 12 C 1.46902 * 111.00632 * 275.00175 * 11 9 7 13 13 C 1.50693 * 109.47611 * 180.02562 * 12 11 9 14 14 C 1.38230 * 119.61763 * 94.99783 * 13 12 11 15 15 C 1.38629 * 119.15895 * 180.02562 * 14 13 12 16 16 C 1.38681 * 118.42245 * 0.02562 * 15 14 13 17 17 C 1.38183 * 119.15878 * 0.27508 * 16 15 14 18 18 N 1.31856 * 119.61564 * 275.02133 * 13 12 11 19 19 C 1.50694 * 109.47327 * 65.31513 * 9 7 2 20 20 C 1.38240 * 119.99937 * 272.39271 * 19 9 7 21 21 C 1.38234 * 119.99966 * 179.78737 * 20 19 9 22 22 C 1.38242 * 119.99813 * 0.44044 * 21 20 19 23 23 C 1.38236 * 119.99708 * 359.81212 * 22 21 20 24 24 C 1.38225 * 120.00322 * 359.97438 * 23 22 21 25 25 H 0.97004 * 119.99740 * 0.02562 * 1 2 3 26 26 H 1.00900 * 110.99758 * 151.04557 * 11 9 7 27 27 H 1.09000 * 109.47098 * 59.99677 * 12 11 9 28 28 H 1.09004 * 109.46463 * 300.00393 * 12 11 9 29 29 H 1.07994 * 120.42089 * 0.04557 * 14 13 12 30 30 H 1.08000 * 120.79002 * 179.97438 * 15 14 13 31 31 H 1.07997 * 120.41616 * 180.02562 * 16 15 14 32 32 H 1.08002 * 119.61472 * 179.70172 * 17 16 15 33 33 H 1.08002 * 119.99859 * 359.97438 * 20 19 9 34 34 H 1.07995 * 119.99757 * 180.27449 * 21 20 19 35 35 H 1.07997 * 119.99473 * 179.83613 * 22 21 20 36 36 H 1.08000 * 119.99500 * 179.97438 * 23 22 21 37 37 H 1.07998 * 120.00074 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0734 -1.2004 0.1554 9 6 1.2666 -2.4902 -0.2149 10 1 1.9551 -3.3257 -0.0879 11 7 0.1763 -2.6013 0.7633 12 6 0.6618 -3.1615 2.0316 13 6 -0.4821 -3.2608 3.0075 14 6 -1.1773 -4.4496 3.1267 15 6 -2.2283 -4.5302 4.0271 16 6 -2.5425 -3.4068 4.7771 17 6 -1.8066 -2.2509 4.5990 18 7 -0.8086 -2.2124 3.7376 19 6 0.6953 -2.5173 -1.6091 20 6 -0.5538 -1.9784 -1.8549 21 6 -1.0759 -1.9994 -3.1346 22 6 -0.3528 -2.5673 -4.1670 23 6 0.8940 -3.1109 -3.9201 24 6 1.4180 -3.0860 -2.6412 25 1 -0.4850 0.8401 -0.0004 26 1 -0.5862 -3.1495 0.3942 27 1 1.4354 -2.5130 2.4427 28 1 1.0758 -4.1543 1.8553 29 1 -0.9049 -5.3049 2.5262 30 1 -2.7895 -5.4458 4.1412 31 1 -3.3548 -3.4338 5.4883 32 1 -2.0481 -1.3702 5.1757 33 1 -1.1204 -1.5384 -1.0476 34 1 -2.0498 -1.5744 -3.3274 35 1 -0.7620 -2.5860 -5.1663 36 1 1.4587 -3.5550 -4.7265 37 1 2.3919 -3.5110 -2.4483 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000055015686.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:31:07 Heat of formation + Delta-G solvation = 76.191754 kcal Electronic energy + Delta-G solvation = -19698.404552 eV Core-core repulsion = 16826.887803 eV Total energy + Delta-G solvation = -2871.516749 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.127 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.74071 -38.29996 -35.37462 -32.67878 -32.00749 -31.05610 -29.90556 -29.41215 -26.59792 -24.79767 -23.12712 -22.41636 -21.58722 -20.83782 -19.87607 -16.59564 -16.28103 -15.94769 -15.72154 -15.09415 -14.78704 -14.16289 -14.09066 -13.69276 -13.39868 -13.03459 -12.86940 -12.51867 -12.33034 -12.12157 -11.76759 -11.62853 -11.28986 -10.98666 -10.83722 -10.64032 -10.25168 -9.97400 -9.61392 -9.53484 -9.24483 -8.87326 -8.67404 -8.37980 -7.87434 -7.49149 -6.83829 -5.77328 -3.95089 1.46301 1.64336 2.41683 2.51248 3.38742 3.45396 3.47486 4.18578 4.52656 4.76726 4.90197 5.03346 5.13152 5.34166 5.38625 5.46262 5.69251 5.76972 5.89933 5.93229 5.97454 6.02497 6.15966 6.33708 6.42830 6.45667 6.57209 6.68120 6.78254 6.91360 7.05906 7.08553 7.21064 7.43420 7.62247 7.89409 7.94386 8.17426 8.24104 8.41782 8.54920 8.82354 9.11931 9.70943 11.16608 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.015280 B = 0.006768 C = 0.005327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1832.031922 B = 4135.933403 C = 5254.698370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.820 5.820 2 C 0.093 3.907 3 Si 0.878 3.122 4 H -0.283 1.283 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.525 4.525 8 H 0.054 0.946 9 C 0.252 3.748 10 H 0.001 0.999 11 N -0.629 5.629 12 C 0.115 3.885 13 C 0.157 3.843 14 C -0.178 4.178 15 C -0.080 4.080 16 C -0.192 4.192 17 C 0.099 3.901 18 N -0.453 5.453 19 C -0.041 4.041 20 C -0.080 4.080 21 C -0.143 4.143 22 C -0.152 4.152 23 C -0.141 4.141 24 C -0.132 4.132 25 H 0.253 0.747 26 H 0.305 0.695 27 H 0.089 0.911 28 H 0.019 0.981 29 H 0.128 0.872 30 H 0.126 0.874 31 H 0.126 0.874 32 H 0.149 0.851 33 H 0.159 0.841 34 H 0.102 0.898 35 H 0.100 0.900 36 H 0.102 0.898 37 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.731 -8.227 3.344 10.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.115 4.115 3 Si 0.706 3.294 4 H -0.210 1.210 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.563 4.563 8 H 0.072 0.928 9 C 0.145 3.855 10 H 0.019 0.981 11 N -0.259 5.259 12 C -0.015 4.015 13 C 0.019 3.981 14 C -0.198 4.198 15 C -0.106 4.106 16 C -0.212 4.212 17 C -0.059 4.059 18 N -0.162 5.162 19 C -0.043 4.043 20 C -0.098 4.098 21 C -0.161 4.161 22 C -0.171 4.171 23 C -0.159 4.159 24 C -0.151 4.151 25 H 0.063 0.937 26 H 0.121 0.879 27 H 0.108 0.892 28 H 0.037 0.963 29 H 0.146 0.854 30 H 0.144 0.856 31 H 0.144 0.856 32 H 0.166 0.834 33 H 0.176 0.824 34 H 0.121 0.879 35 H 0.118 0.882 36 H 0.120 0.880 37 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -4.349 -6.670 3.469 8.686 hybrid contribution 0.036 -0.567 -0.307 0.646 sum -4.312 -7.237 3.162 8.999 Atomic orbital electron populations 1.70004 1.05514 1.25117 1.44565 1.24819 0.94536 0.98225 0.93948 0.86850 0.80231 0.84518 0.77799 1.20972 1.21338 1.20124 1.20779 0.93143 0.90150 1.52188 0.92762 1.18159 0.87728 0.95335 0.84259 0.98149 1.60842 1.10107 1.52796 1.02163 1.20715 0.93211 0.96880 0.90646 1.21542 0.95402 0.87809 0.93380 1.22010 0.97691 0.99621 1.00494 1.21449 0.96087 0.98349 0.94759 1.22031 1.02110 0.94896 1.02156 1.22797 0.91301 0.97058 0.94765 1.67645 1.14758 1.29526 1.04251 1.20508 0.93017 0.93413 0.97337 1.21760 0.96076 0.95122 0.96884 1.21158 0.99489 1.01230 0.94211 1.20815 0.95936 1.02295 0.98028 1.20792 0.96289 1.02431 0.96370 1.20891 0.99419 1.01747 0.93036 0.93684 0.87852 0.89226 0.96284 0.85448 0.85597 0.85607 0.83417 0.82403 0.87940 0.88181 0.87971 0.87674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -22.12 9.24 55.43 0.51 -21.61 16 2 C 0.09 2.51 5.20 -17.82 -0.09 2.42 16 3 Si 0.88 21.39 29.55 -169.99 -5.02 16.36 16 4 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.52 -13.98 8.62 -34.44 -0.30 -14.28 16 8 H 0.05 1.47 7.83 -52.49 -0.41 1.05 16 9 C 0.25 5.97 2.49 -70.02 -0.17 5.80 16 10 H 0.00 0.02 7.72 -51.93 -0.40 -0.38 16 11 N -0.63 -14.05 4.33 -110.46 -0.48 -14.53 16 12 C 0.12 2.31 5.79 -4.98 -0.03 2.28 16 13 C 0.16 2.89 6.29 -82.59 -0.52 2.37 16 14 C -0.18 -2.66 9.72 -39.44 -0.38 -3.05 16 15 C -0.08 -1.04 10.18 -39.27 -0.40 -1.44 16 16 C -0.19 -2.48 10.11 -39.44 -0.40 -2.87 16 17 C 0.10 1.53 11.18 -17.55 -0.20 1.33 16 18 N -0.45 -8.83 10.27 -9.47 -0.10 -8.93 16 19 C -0.04 -0.95 4.65 -104.63 -0.49 -1.43 16 20 C -0.08 -1.81 7.66 -39.58 -0.30 -2.11 16 21 C -0.14 -2.88 10.05 -39.58 -0.40 -3.27 16 22 C -0.15 -2.85 10.05 -39.58 -0.40 -3.25 16 23 C -0.14 -2.65 10.05 -39.59 -0.40 -3.05 16 24 C -0.13 -2.75 9.69 -39.59 -0.38 -3.13 16 25 H 0.25 6.74 8.31 -40.82 -0.34 6.40 16 26 H 0.30 6.53 7.66 -39.29 -0.30 6.23 16 27 H 0.09 2.01 8.00 -51.93 -0.42 1.59 16 28 H 0.02 0.35 7.95 -51.93 -0.41 -0.07 16 29 H 0.13 1.65 8.06 -52.49 -0.42 1.23 16 30 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 31 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 32 H 0.15 1.91 8.06 -52.49 -0.42 1.49 16 33 H 0.16 3.87 5.59 -52.49 -0.29 3.58 16 34 H 0.10 1.85 8.06 -52.49 -0.42 1.42 16 35 H 0.10 1.58 8.06 -52.49 -0.42 1.16 16 36 H 0.10 1.63 8.06 -52.49 -0.42 1.21 16 37 H 0.11 2.03 8.06 -52.49 -0.42 1.61 16 LS Contribution 313.96 15.07 4.73 4.73 Total: -1.00 -29.07 313.96 -9.96 -39.03 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: -4.75 Total: 8.61 kcal Atomic # 6 Polarization: -18.82 SS G_CDS: -4.86 Total: -23.67 kcal Atomic # 7 Polarization: -45.00 SS G_CDS: -0.06 Total: -45.06 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -29.07 -9.96 -39.03 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055015686.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.224 kcal (2) G-P(sol) polarization free energy of solvation -29.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.032 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds