Wall clock time and date at job start Mon Mar 30 2020 07:31:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86805 * 120.00052 * 2 1 4 4 H 1.48502 * 109.47081 * 265.76837 * 3 2 1 5 5 H 1.48503 * 109.46677 * 25.76450 * 3 2 1 6 6 H 1.48500 * 109.47061 * 145.76491 * 3 2 1 7 7 C 1.37876 * 120.00389 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99506 * 353.91701 * 7 2 1 9 9 C 1.50701 * 120.00274 * 173.91998 * 7 2 1 10 10 H 1.08998 * 109.47105 * 355.29622 * 9 7 2 11 11 N 1.46895 * 109.47118 * 235.29723 * 9 7 2 12 12 C 1.46902 * 111.00105 * 84.99971 * 11 9 7 13 13 C 1.50694 * 109.47240 * 180.02562 * 12 11 9 14 14 C 1.38229 * 119.62019 * 95.00193 * 13 12 11 15 15 C 1.38628 * 119.16035 * 180.02562 * 14 13 12 16 16 C 1.38675 * 118.42406 * 359.97438 * 15 14 13 17 17 C 1.38176 * 119.15830 * 0.28234 * 16 15 14 18 18 N 1.31860 * 119.61848 * 275.01942 * 13 12 11 19 19 C 1.50699 * 109.46940 * 115.29814 * 9 7 2 20 20 C 1.38238 * 119.99966 * 73.71430 * 19 9 7 21 21 C 1.38238 * 119.99590 * 179.78872 * 20 19 9 22 22 C 1.38230 * 120.00560 * 0.43314 * 21 20 19 23 23 C 1.38243 * 119.99359 * 359.81836 * 22 21 20 24 24 C 1.38224 * 120.00423 * 359.97438 * 23 22 21 25 25 H 0.96998 * 119.99762 * 0.02562 * 1 2 3 26 26 H 1.00900 * 111.00382 * 208.95614 * 11 9 7 27 27 H 1.08995 * 109.46843 * 59.99545 * 12 11 9 28 28 H 1.09005 * 109.46705 * 300.00001 * 12 11 9 29 29 H 1.07997 * 120.42051 * 359.97438 * 14 13 12 30 30 H 1.08003 * 120.78929 * 180.02562 * 15 14 13 31 31 H 1.07998 * 120.41727 * 180.02562 * 16 15 14 32 32 H 1.08007 * 119.61721 * 179.70258 * 17 16 15 33 33 H 1.07999 * 119.99885 * 359.97438 * 20 19 9 34 34 H 1.08008 * 119.99663 * 180.27192 * 21 20 19 35 35 H 1.07990 * 120.00462 * 179.83574 * 22 21 20 36 36 H 1.08003 * 119.99367 * 179.97438 * 23 22 21 37 37 H 1.07998 * 120.00310 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.5861 1.9948 -1.3963 5 1 1.4046 2.6769 0.6086 6 1 3.4991 1.4677 0.7877 7 6 2.0046 -1.1940 -0.0005 8 1 1.4691 -2.1267 0.0982 9 6 3.5052 -1.1976 -0.1388 10 1 3.8568 -0.1801 -0.3097 11 7 3.8903 -2.0459 -1.2745 12 6 3.8390 -1.2933 -2.5350 13 6 4.2389 -2.1944 -3.6747 14 6 3.2630 -2.8464 -4.4049 15 6 3.6415 -3.6735 -5.4510 16 6 4.9936 -3.8142 -5.7253 17 6 5.9123 -3.1347 -4.9485 18 7 5.5157 -2.3521 -3.9638 19 6 4.1247 -1.7376 1.1244 20 6 4.0605 -3.0903 1.4022 21 6 4.6326 -3.5862 2.5588 22 6 5.2610 -2.7284 3.4420 23 6 5.3206 -1.3750 3.1667 24 6 4.7523 -0.8796 2.0081 25 1 -0.4850 0.8400 -0.0004 26 1 4.8040 -2.4493 -1.1311 27 1 4.5252 -0.4481 -2.4816 28 1 2.8251 -0.9284 -2.6993 29 1 2.2188 -2.7139 -4.1629 30 1 2.9010 -4.1954 -6.0390 31 1 5.3244 -4.4500 -6.5331 32 1 6.9675 -3.2426 -5.1525 33 1 3.5661 -3.7600 0.7141 34 1 4.5863 -4.6437 2.7736 35 1 5.7056 -3.1155 4.3468 36 1 5.8112 -0.7047 3.8569 37 1 4.7992 0.1777 1.7928 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000055015689.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:31:10 Heat of formation + Delta-G solvation = 63.038585 kcal Electronic energy + Delta-G solvation = -19406.614343 eV Core-core repulsion = 16534.527230 eV Total energy + Delta-G solvation = -2872.087113 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.127 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.93203 -38.65537 -35.69010 -32.84043 -32.16740 -31.64492 -30.24635 -29.82931 -27.02731 -25.06829 -23.26980 -22.54383 -21.95400 -21.12879 -19.79443 -17.02239 -16.82905 -16.17061 -15.97975 -15.28587 -14.91023 -14.58258 -14.23475 -14.11557 -13.59213 -13.26934 -12.97596 -12.78481 -12.71364 -12.39589 -12.22218 -11.99343 -11.48762 -11.37008 -10.96503 -10.80810 -10.47820 -10.12821 -9.83686 -9.69986 -9.57682 -9.22611 -8.83277 -8.64912 -8.24744 -7.91785 -7.39671 -6.17998 -4.14968 1.31096 1.47757 2.07128 2.11009 3.19166 3.27512 3.29461 3.97803 4.30146 4.47761 4.55434 4.96329 4.96720 5.08829 5.23138 5.38004 5.38481 5.50948 5.58292 5.71184 5.78083 5.89293 5.96292 6.04285 6.24190 6.25153 6.34465 6.37169 6.43400 6.57141 6.70224 6.78047 6.92658 7.11636 7.15882 7.41004 7.47665 7.73169 7.88727 8.20126 8.26892 8.59692 8.95650 9.44311 10.94350 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.014078 B = 0.006667 C = 0.005146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1988.443572 B = 4198.498354 C = 5439.903468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.074 3.926 3 Si 0.866 3.134 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.264 1.264 7 C -0.481 4.481 8 H 0.082 0.918 9 C 0.216 3.784 10 H 0.019 0.981 11 N -0.669 5.669 12 C 0.113 3.887 13 C 0.146 3.854 14 C -0.148 4.148 15 C -0.080 4.080 16 C -0.186 4.186 17 C 0.093 3.907 18 N -0.486 5.486 19 C -0.044 4.044 20 C -0.100 4.100 21 C -0.127 4.127 22 C -0.146 4.146 23 C -0.125 4.125 24 C -0.131 4.131 25 H 0.265 0.735 26 H 0.319 0.681 27 H 0.034 0.966 28 H 0.096 0.904 29 H 0.140 0.860 30 H 0.130 0.870 31 H 0.128 0.872 32 H 0.149 0.851 33 H 0.125 0.875 34 H 0.111 0.889 35 H 0.109 0.891 36 H 0.110 0.890 37 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.932 -5.312 -5.589 12.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.129 4.129 3 Si 0.693 3.307 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.189 1.189 7 C -0.519 4.519 8 H 0.100 0.900 9 C 0.109 3.891 10 H 0.036 0.964 11 N -0.300 5.300 12 C -0.017 4.017 13 C 0.008 3.992 14 C -0.168 4.168 15 C -0.106 4.106 16 C -0.206 4.206 17 C -0.064 4.064 18 N -0.195 5.195 19 C -0.045 4.045 20 C -0.119 4.119 21 C -0.145 4.145 22 C -0.165 4.165 23 C -0.143 4.143 24 C -0.150 4.150 25 H 0.075 0.925 26 H 0.136 0.864 27 H 0.052 0.948 28 H 0.114 0.886 29 H 0.158 0.842 30 H 0.148 0.852 31 H 0.146 0.854 32 H 0.167 0.833 33 H 0.143 0.857 34 H 0.129 0.871 35 H 0.127 0.873 36 H 0.128 0.872 37 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 9.730 -4.988 -5.165 12.093 hybrid contribution 0.433 1.020 -0.371 1.169 sum 10.164 -3.968 -5.535 12.235 Atomic orbital electron populations 1.69884 1.06131 1.27061 1.49504 1.25069 0.94747 0.98666 0.94466 0.87063 0.80436 0.84273 0.78894 1.20067 1.21246 1.18867 1.20820 0.87721 0.94817 1.48567 0.89971 1.18702 0.96363 0.90278 0.83758 0.96375 1.61006 1.31759 1.36188 1.01017 1.20754 1.01526 0.92330 0.87100 1.21444 0.88055 0.94737 0.94982 1.22084 1.01734 0.97252 0.95775 1.21580 0.96123 0.96529 0.96348 1.22037 0.94254 1.02380 1.01944 1.22655 0.99875 0.92634 0.91227 1.67523 1.18700 1.16822 1.16495 1.20507 0.92522 0.93347 0.98124 1.21001 0.98631 0.95521 0.96731 1.21069 0.99339 0.98952 0.95180 1.20886 1.02216 0.93789 0.99559 1.20948 1.00802 0.95329 0.97222 1.21091 0.99245 0.99492 0.95162 0.92450 0.86381 0.94813 0.88626 0.84228 0.85163 0.85392 0.83327 0.85729 0.87110 0.87325 0.87226 0.86954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.08 13.96 55.43 0.77 -25.31 16 2 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 3 Si 0.87 20.70 26.94 -169.99 -4.58 16.12 16 4 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.26 -6.02 5.63 56.52 0.32 -5.70 16 7 C -0.48 -12.90 8.84 -34.44 -0.30 -13.20 16 8 H 0.08 2.45 8.06 -52.49 -0.42 2.03 16 9 C 0.22 4.93 2.14 -70.02 -0.15 4.78 16 10 H 0.02 0.43 4.29 -51.93 -0.22 0.21 16 11 N -0.67 -13.79 5.84 -110.46 -0.65 -14.44 16 12 C 0.11 2.19 5.79 -4.98 -0.03 2.16 16 13 C 0.15 2.51 6.29 -82.59 -0.52 1.99 16 14 C -0.15 -2.26 9.72 -39.44 -0.38 -2.65 16 15 C -0.08 -0.99 10.18 -39.28 -0.40 -1.39 16 16 C -0.19 -2.15 10.11 -39.44 -0.40 -2.55 16 17 C 0.09 1.23 11.18 -17.55 -0.20 1.03 16 18 N -0.49 -8.03 10.27 -9.47 -0.10 -8.13 16 19 C -0.04 -0.93 4.64 -104.62 -0.49 -1.42 16 20 C -0.10 -1.98 9.08 -39.58 -0.36 -2.34 16 21 C -0.13 -2.18 10.05 -39.58 -0.40 -2.58 16 22 C -0.15 -2.39 10.05 -39.58 -0.40 -2.78 16 23 C -0.12 -2.16 10.05 -39.58 -0.40 -2.56 16 24 C -0.13 -2.63 9.67 -39.59 -0.38 -3.01 16 25 H 0.27 7.34 8.31 -40.82 -0.34 7.01 16 26 H 0.32 6.29 8.15 -39.29 -0.32 5.97 16 27 H 0.03 0.66 8.05 -51.93 -0.42 0.24 16 28 H 0.10 1.99 7.90 -51.93 -0.41 1.58 16 29 H 0.14 2.10 8.06 -52.49 -0.42 1.67 16 30 H 0.13 1.25 8.06 -52.48 -0.42 0.83 16 31 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 32 H 0.15 1.50 8.06 -52.48 -0.42 1.08 16 33 H 0.12 2.47 7.91 -52.49 -0.42 2.06 16 34 H 0.11 1.60 8.06 -52.48 -0.42 1.17 16 35 H 0.11 1.45 8.06 -52.49 -0.42 1.03 16 36 H 0.11 1.59 8.06 -52.48 -0.42 1.17 16 37 H 0.11 2.24 6.82 -52.49 -0.36 1.88 16 LS Contribution 316.02 15.07 4.76 4.76 Total: -1.00 -29.77 316.02 -9.43 -39.21 By element: Atomic # 1 Polarization: 15.11 SS G_CDS: -4.75 Total: 10.36 kcal Atomic # 6 Polarization: -17.67 SS G_CDS: -4.90 Total: -22.57 kcal Atomic # 7 Polarization: -47.91 SS G_CDS: 0.03 Total: -47.88 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -4.58 Total: 16.12 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -29.77 -9.43 -39.21 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055015689.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.245 kcal (2) G-P(sol) polarization free energy of solvation -29.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.206 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds