Wall clock time and date at job start Mon Mar 30 2020 07:31:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86805 * 120.00052 * 2 1 4 4 H 1.48502 * 109.47081 * 265.76837 * 3 2 1 5 5 H 1.48503 * 109.46677 * 25.76450 * 3 2 1 6 6 H 1.48500 * 109.47061 * 145.76491 * 3 2 1 7 7 C 1.37876 * 120.00389 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99506 * 353.91701 * 7 2 1 9 9 C 1.50701 * 120.00274 * 173.91998 * 7 2 1 10 10 H 1.08998 * 109.47105 * 355.29622 * 9 7 2 11 11 N 1.46895 * 109.47118 * 235.29723 * 9 7 2 12 12 C 1.46902 * 111.00105 * 84.99971 * 11 9 7 13 13 C 1.50694 * 109.47240 * 180.02562 * 12 11 9 14 14 C 1.38229 * 119.62019 * 95.00193 * 13 12 11 15 15 C 1.38628 * 119.16035 * 180.02562 * 14 13 12 16 16 C 1.38675 * 118.42406 * 359.97438 * 15 14 13 17 17 C 1.38176 * 119.15830 * 0.28234 * 16 15 14 18 18 N 1.31860 * 119.61848 * 275.01942 * 13 12 11 19 19 C 1.50699 * 109.46940 * 115.29814 * 9 7 2 20 20 C 1.38238 * 119.99966 * 73.71430 * 19 9 7 21 21 C 1.38238 * 119.99590 * 179.78872 * 20 19 9 22 22 C 1.38230 * 120.00560 * 0.43314 * 21 20 19 23 23 C 1.38243 * 119.99359 * 359.81836 * 22 21 20 24 24 C 1.38224 * 120.00423 * 359.97438 * 23 22 21 25 25 H 0.96998 * 119.99762 * 0.02562 * 1 2 3 26 26 H 1.00900 * 111.00382 * 208.95614 * 11 9 7 27 27 H 1.08995 * 109.46843 * 59.99545 * 12 11 9 28 28 H 1.09005 * 109.46705 * 300.00001 * 12 11 9 29 29 H 1.07997 * 120.42051 * 359.97438 * 14 13 12 30 30 H 1.08003 * 120.78929 * 180.02562 * 15 14 13 31 31 H 1.07998 * 120.41727 * 180.02562 * 16 15 14 32 32 H 1.08007 * 119.61721 * 179.70258 * 17 16 15 33 33 H 1.07999 * 119.99885 * 359.97438 * 20 19 9 34 34 H 1.08008 * 119.99663 * 180.27192 * 21 20 19 35 35 H 1.07990 * 120.00462 * 179.83574 * 22 21 20 36 36 H 1.08003 * 119.99367 * 179.97438 * 23 22 21 37 37 H 1.07998 * 120.00310 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.5861 1.9948 -1.3963 5 1 1.4046 2.6769 0.6086 6 1 3.4991 1.4677 0.7877 7 6 2.0046 -1.1940 -0.0005 8 1 1.4691 -2.1267 0.0982 9 6 3.5052 -1.1976 -0.1388 10 1 3.8568 -0.1801 -0.3097 11 7 3.8903 -2.0459 -1.2745 12 6 3.8390 -1.2933 -2.5350 13 6 4.2389 -2.1944 -3.6747 14 6 3.2630 -2.8464 -4.4049 15 6 3.6415 -3.6735 -5.4510 16 6 4.9936 -3.8142 -5.7253 17 6 5.9123 -3.1347 -4.9485 18 7 5.5157 -2.3521 -3.9638 19 6 4.1247 -1.7376 1.1244 20 6 4.0605 -3.0903 1.4022 21 6 4.6326 -3.5862 2.5588 22 6 5.2610 -2.7284 3.4420 23 6 5.3206 -1.3750 3.1667 24 6 4.7523 -0.8796 2.0081 25 1 -0.4850 0.8400 -0.0004 26 1 4.8040 -2.4493 -1.1311 27 1 4.5252 -0.4481 -2.4816 28 1 2.8251 -0.9284 -2.6993 29 1 2.2188 -2.7139 -4.1629 30 1 2.9010 -4.1954 -6.0390 31 1 5.3244 -4.4500 -6.5331 32 1 6.9675 -3.2426 -5.1525 33 1 3.5661 -3.7600 0.7141 34 1 4.5863 -4.6437 2.7736 35 1 5.7056 -3.1155 4.3468 36 1 5.8112 -0.7047 3.8569 37 1 4.7992 0.1777 1.7928 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000055015689.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:31:10 Heat of formation + Delta-G solvation = 44.263916 kcal Electronic energy + Delta-G solvation = -19407.428474 eV Core-core repulsion = 16534.527230 eV Total energy + Delta-G solvation = -2872.901244 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.127 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.07852 -40.14067 -37.30268 -34.63832 -33.44923 -33.10314 -31.67431 -31.17916 -28.80105 -26.65070 -24.35110 -24.13778 -23.36317 -22.45490 -21.48213 -19.07118 -18.09812 -17.43475 -17.13408 -16.68678 -16.52672 -16.07165 -15.81815 -15.59447 -14.99837 -14.75527 -14.50740 -14.24439 -14.05096 -13.90945 -13.61417 -13.42451 -13.19887 -12.85595 -12.66440 -12.29925 -12.13830 -11.77626 -11.66572 -11.51385 -10.79160 -10.75634 -10.36236 -9.93599 -9.68220 -9.42405 -9.11948 -8.32288 -6.33146 0.20027 0.41679 0.62337 0.66627 1.26558 1.28859 1.37314 2.27369 2.79069 2.97064 3.13895 3.34637 3.71506 3.87329 4.06631 4.14972 4.22930 4.24304 4.28952 4.32258 4.41912 4.50910 4.62202 4.67439 4.81701 4.87754 4.89939 4.91649 5.22608 5.29493 5.31426 5.34960 5.48849 5.69866 5.72936 5.83678 5.89981 6.06695 6.26701 6.41661 6.66693 6.82274 7.10010 7.30157 8.84184 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.014078 B = 0.006667 C = 0.005146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1988.443572 B = 4198.498354 C = 5439.903468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C 0.022 3.978 3 Si 0.922 3.078 4 H -0.268 1.268 5 H -0.284 1.284 6 H -0.246 1.246 7 C -0.477 4.477 8 H 0.036 0.964 9 C 0.224 3.776 10 H 0.011 0.989 11 N -0.669 5.669 12 C 0.119 3.881 13 C 0.119 3.881 14 C -0.166 4.166 15 C -0.075 4.075 16 C -0.168 4.168 17 C 0.085 3.915 18 N -0.511 5.511 19 C -0.074 4.074 20 C -0.117 4.117 21 C -0.124 4.124 22 C -0.135 4.135 23 C -0.122 4.122 24 C -0.150 4.150 25 H 0.266 0.734 26 H 0.327 0.673 27 H 0.027 0.973 28 H 0.070 0.930 29 H 0.128 0.872 30 H 0.163 0.837 31 H 0.172 0.828 32 H 0.182 0.818 33 H 0.110 0.890 34 H 0.141 0.859 35 H 0.151 0.849 36 H 0.143 0.857 37 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.891 -6.462 -5.641 15.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.177 4.177 3 Si 0.747 3.253 4 H -0.193 1.193 5 H -0.210 1.210 6 H -0.170 1.170 7 C -0.516 4.516 8 H 0.054 0.946 9 C 0.116 3.884 10 H 0.029 0.971 11 N -0.300 5.300 12 C -0.011 4.011 13 C -0.018 4.018 14 C -0.187 4.187 15 C -0.101 4.101 16 C -0.187 4.187 17 C -0.072 4.072 18 N -0.222 5.222 19 C -0.075 4.075 20 C -0.136 4.136 21 C -0.142 4.142 22 C -0.153 4.153 23 C -0.139 4.139 24 C -0.169 4.169 25 H 0.075 0.925 26 H 0.144 0.856 27 H 0.046 0.954 28 H 0.088 0.912 29 H 0.146 0.854 30 H 0.181 0.819 31 H 0.190 0.810 32 H 0.199 0.801 33 H 0.128 0.872 34 H 0.159 0.841 35 H 0.168 0.832 36 H 0.161 0.839 37 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 12.711 -6.150 -5.216 15.053 hybrid contribution -0.395 1.174 -0.397 1.301 sum 12.315 -4.976 -5.614 14.420 Atomic orbital electron populations 1.70024 1.07844 1.27907 1.52074 1.25778 0.95382 1.02133 0.94402 0.86137 0.79776 0.79920 0.79457 1.19329 1.21033 1.17016 1.20885 0.90023 0.92947 1.47775 0.94579 1.18468 0.93850 0.90490 0.85574 0.97104 1.60764 1.32176 1.36033 1.01010 1.20582 0.99875 0.92885 0.87742 1.21031 0.89218 0.96173 0.95337 1.22100 1.00894 0.98496 0.97198 1.21971 0.97694 0.95290 0.95159 1.22510 0.93275 1.01147 1.01809 1.23300 1.01918 0.91702 0.90279 1.67431 1.18124 1.18353 1.18286 1.20408 0.94793 0.94534 0.97765 1.21003 0.99679 0.94813 0.98081 1.21421 0.98032 1.00837 0.93923 1.21380 1.00474 0.93166 1.00273 1.21337 0.99659 0.96554 0.96389 1.21207 1.00246 0.99154 0.96280 0.92462 0.85569 0.95448 0.91202 0.85386 0.81924 0.81022 0.80117 0.87189 0.84073 0.83167 0.83904 0.87459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.18 13.96 21.45 0.30 -57.88 16 2 C 0.02 1.25 5.47 84.65 0.46 1.71 16 3 Si 0.92 44.17 26.94 68.60 1.85 46.02 16 4 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 5 H -0.28 -13.42 7.11 99.48 0.71 -12.72 16 6 H -0.25 -10.98 5.63 99.48 0.56 -10.42 16 7 C -0.48 -27.28 8.84 25.60 0.23 -27.06 16 8 H 0.04 2.33 8.06 -2.91 -0.02 2.31 16 9 C 0.22 10.70 2.14 43.42 0.09 10.79 16 10 H 0.01 0.55 4.29 -2.39 -0.01 0.54 16 11 N -0.67 -29.15 5.84 -503.40 -2.94 -32.09 16 12 C 0.12 4.92 5.79 85.55 0.50 5.41 16 13 C 0.12 4.23 6.29 42.55 0.27 4.50 16 14 C -0.17 -5.18 9.72 22.36 0.22 -4.96 16 15 C -0.08 -1.71 10.18 22.47 0.23 -1.48 16 16 C -0.17 -3.26 10.11 22.36 0.23 -3.03 16 17 C 0.09 2.03 11.18 84.67 0.95 2.98 16 18 N -0.51 -16.70 10.27 -183.89 -1.89 -18.59 16 19 C -0.07 -3.21 4.64 -19.86 -0.09 -3.31 16 20 C -0.12 -4.66 9.08 22.27 0.20 -4.46 16 21 C -0.12 -3.97 10.05 22.27 0.22 -3.74 16 22 C -0.14 -3.87 10.05 22.27 0.22 -3.65 16 23 C -0.12 -3.83 10.05 22.27 0.22 -3.61 16 24 C -0.15 -5.89 9.67 22.27 0.22 -5.68 16 25 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 26 H 0.33 13.43 8.15 -89.69 -0.73 12.70 16 27 H 0.03 1.14 8.05 -2.39 -0.02 1.12 16 28 H 0.07 3.17 7.90 -2.38 -0.02 3.15 16 29 H 0.13 4.14 8.06 -2.91 -0.02 4.12 16 30 H 0.16 2.58 8.06 -2.91 -0.02 2.56 16 31 H 0.17 1.87 8.06 -2.91 -0.02 1.85 16 32 H 0.18 2.99 8.06 -2.91 -0.02 2.96 16 33 H 0.11 4.58 7.91 -2.91 -0.02 4.55 16 34 H 0.14 3.59 8.06 -2.91 -0.02 3.57 16 35 H 0.15 3.12 8.06 -2.92 -0.02 3.10 16 36 H 0.14 3.52 8.06 -2.91 -0.02 3.50 16 37 H 0.11 4.21 6.82 -2.91 -0.02 4.19 16 Total: -1.00 -69.71 316.02 1.67 -68.04 By element: Atomic # 1 Polarization: 29.88 SS G_CDS: 0.19 Total: 30.08 kcal Atomic # 6 Polarization: -39.74 SS G_CDS: 4.16 Total: -35.58 kcal Atomic # 7 Polarization: -104.03 SS G_CDS: -4.53 Total: -108.56 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 1.85 Total: 46.02 kcal Total: -69.71 1.67 -68.04 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055015689.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.304 kcal (2) G-P(sol) polarization free energy of solvation -69.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.040 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds