Wall clock time and date at job start Mon Mar 30 2020 07:31:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00368 * 2 1 4 4 H 1.48496 * 109.47215 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47107 * 299.99846 * 3 2 1 6 6 H 1.48495 * 109.47201 * 59.99815 * 3 2 1 7 7 C 1.37882 * 119.99898 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00427 * 189.64573 * 7 2 1 9 9 C 1.50698 * 119.99641 * 9.36989 * 7 2 1 10 10 H 1.09007 * 109.47204 * 185.72106 * 9 7 2 11 11 N 1.46897 * 109.47442 * 305.72688 * 9 7 2 12 12 C 1.46901 * 110.99898 * 274.99961 * 11 9 7 13 13 C 1.50697 * 109.47403 * 179.97438 * 12 11 9 14 14 C 1.38676 * 120.41996 * 269.72285 * 13 12 11 15 15 C 1.38624 * 118.41942 * 179.77888 * 14 13 12 16 16 C 1.38232 * 119.16048 * 0.51657 * 15 14 13 17 17 N 1.31851 * 120.76573 * 359.72442 * 16 15 14 18 18 C 1.31889 * 121.72155 * 0.02562 * 17 16 15 19 19 C 1.50705 * 109.47117 * 65.72705 * 9 7 2 20 20 C 1.38231 * 119.99730 * 271.16894 * 19 9 7 21 21 C 1.38234 * 119.99919 * 179.80656 * 20 19 9 22 22 C 1.38238 * 119.99627 * 0.40667 * 21 20 19 23 23 C 1.38230 * 120.00429 * 359.84865 * 22 21 20 24 24 C 1.38233 * 119.99779 * 91.44527 * 19 9 7 25 25 H 0.97007 * 119.99756 * 359.97438 * 1 2 3 26 26 H 1.00897 * 111.00242 * 151.05056 * 11 9 7 27 27 H 1.09003 * 109.47139 * 299.99946 * 12 11 9 28 28 H 1.09007 * 109.47047 * 59.99724 * 12 11 9 29 29 H 1.08001 * 120.79026 * 0.02562 * 14 13 12 30 30 H 1.08005 * 120.42048 * 180.21918 * 15 14 13 31 31 H 1.08004 * 119.61754 * 179.74752 * 16 15 14 32 32 H 1.08008 * 119.61323 * 180.02562 * 18 17 16 33 33 H 1.07999 * 120.00490 * 0.02562 * 20 19 9 34 34 H 1.07999 * 120.00435 * 180.23097 * 21 20 19 35 35 H 1.08007 * 119.99635 * 179.83287 * 22 21 20 36 36 H 1.07996 * 120.00331 * 179.97438 * 23 22 21 37 37 H 1.07992 * 120.00298 * 359.97438 * 24 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2125 6 1 1.8905 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0731 -1.2007 0.1572 9 6 1.2660 -2.4905 -0.2114 10 1 1.9531 -3.3262 -0.0779 11 7 0.1718 -2.5958 0.7631 12 6 0.6520 -3.1504 2.0359 13 6 -0.4955 -3.2426 3.0084 14 6 -0.7848 -2.1835 3.8555 15 6 -1.8525 -2.3110 4.7304 16 6 -2.5814 -3.4856 4.7368 17 7 -2.2744 -4.4743 3.9204 18 6 -1.2688 -4.3860 3.0716 19 6 0.7000 -2.5238 -1.6077 20 6 -0.5580 -2.0076 -1.8560 21 6 -1.0756 -2.0345 -3.1375 22 6 -0.3385 -2.5852 -4.1691 23 6 0.9174 -3.1062 -3.9199 24 6 1.4366 -3.0757 -2.6390 25 1 -0.4850 0.8401 0.0004 26 1 -0.5897 -3.1450 0.3938 27 1 1.0656 -4.1445 1.8660 28 1 1.4248 -2.5006 2.4468 29 1 -0.1949 -1.2791 3.8314 30 1 -2.1087 -1.5048 5.4019 31 1 -3.4122 -3.5945 5.4183 32 1 -1.0476 -5.2168 2.4178 33 1 -1.1352 -1.5800 -1.0494 34 1 -2.0570 -1.6278 -3.3322 35 1 -0.7440 -2.6087 -5.1699 36 1 1.4931 -3.5368 -4.7258 37 1 2.4178 -3.4827 -2.4443 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000055016056.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:31:14 Heat of formation + Delta-G solvation = 71.150263 kcal Electronic energy + Delta-G solvation = -19697.827672 eV Core-core repulsion = 16826.092308 eV Total energy + Delta-G solvation = -2871.735364 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.127 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.75182 -38.35066 -35.54168 -33.00078 -31.76629 -31.09528 -29.94054 -29.39174 -26.58686 -24.73910 -23.15020 -22.47875 -21.62633 -20.83163 -19.92538 -16.76715 -16.37349 -15.97357 -15.88086 -14.89918 -14.84126 -14.12721 -14.10900 -13.74452 -13.44186 -13.13572 -12.65030 -12.60329 -12.52058 -12.21419 -11.84296 -11.65671 -11.27385 -11.11095 -10.95338 -10.67393 -10.32510 -10.02392 -9.71320 -9.39695 -9.30233 -9.08603 -8.67170 -8.47432 -7.91577 -7.54393 -6.93446 -5.88174 -4.06458 1.46478 1.69285 2.37806 2.47098 3.27609 3.36989 3.40083 4.16446 4.42013 4.74531 4.85876 5.16418 5.24063 5.31408 5.40785 5.45603 5.64859 5.73705 5.82489 5.88949 5.96913 6.03910 6.19300 6.29029 6.47821 6.50716 6.59339 6.65634 6.80144 6.92087 7.01869 7.06980 7.16203 7.39500 7.56861 7.81627 7.86277 8.09625 8.17187 8.27463 8.35575 8.73674 9.02755 9.59785 11.05418 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.015252 B = 0.006740 C = 0.005293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1835.327928 B = 4153.273951 C = 5288.495128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.091 3.909 3 Si 0.875 3.125 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.286 1.286 7 C -0.523 4.523 8 H 0.055 0.945 9 C 0.250 3.750 10 H 0.002 0.998 11 N -0.634 5.634 12 C 0.109 3.891 13 C -0.107 4.107 14 C -0.049 4.049 15 C -0.176 4.176 16 C 0.080 3.920 17 N -0.492 5.492 18 C 0.092 3.908 19 C -0.042 4.042 20 C -0.080 4.080 21 C -0.142 4.142 22 C -0.152 4.152 23 C -0.140 4.140 24 C -0.132 4.132 25 H 0.253 0.747 26 H 0.308 0.692 27 H 0.016 0.984 28 H 0.081 0.919 29 H 0.136 0.864 30 H 0.128 0.872 31 H 0.147 0.853 32 H 0.147 0.853 33 H 0.156 0.844 34 H 0.103 0.897 35 H 0.101 0.899 36 H 0.103 0.897 37 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.623 -4.936 3.099 6.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.457 5.457 2 C -0.117 4.117 3 Si 0.703 3.297 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.212 1.212 7 C -0.561 4.561 8 H 0.073 0.927 9 C 0.143 3.857 10 H 0.019 0.981 11 N -0.264 5.264 12 C -0.021 4.021 13 C -0.109 4.109 14 C -0.076 4.076 15 C -0.196 4.196 16 C -0.078 4.078 17 N -0.200 5.200 18 C -0.065 4.065 19 C -0.043 4.043 20 C -0.098 4.098 21 C -0.160 4.160 22 C -0.170 4.170 23 C -0.158 4.158 24 C -0.150 4.150 25 H 0.063 0.937 26 H 0.125 0.875 27 H 0.034 0.966 28 H 0.100 0.900 29 H 0.153 0.847 30 H 0.146 0.854 31 H 0.164 0.836 32 H 0.165 0.835 33 H 0.173 0.827 34 H 0.121 0.879 35 H 0.119 0.881 36 H 0.121 0.879 37 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -3.220 -4.926 3.332 6.763 hybrid contribution 1.131 1.141 -0.492 1.680 sum -2.090 -3.785 2.840 5.173 Atomic orbital electron populations 1.70050 1.05482 1.25058 1.45076 1.24843 0.94557 0.98211 0.94072 0.86828 0.80545 0.84788 0.77497 1.19965 1.21096 1.21189 1.20849 0.93204 0.90159 1.51910 0.92702 1.18172 0.87830 0.95294 0.84384 0.98064 1.60920 1.10130 1.53072 1.02270 1.20721 0.93307 0.96893 0.91164 1.21074 0.98618 0.94193 0.97041 1.21546 0.95480 0.98145 0.92401 1.22102 0.97409 0.99234 1.00884 1.22571 0.98709 0.89636 0.96856 1.67602 1.16239 1.30913 1.05272 1.22601 0.91031 0.97063 0.95817 1.20494 0.93006 0.93461 0.97323 1.21667 0.96084 0.95299 0.96783 1.21153 0.99417 1.01258 0.94173 1.20823 0.95743 1.02362 0.98067 1.20807 0.96194 1.02426 0.96374 1.20893 0.99382 1.01745 0.93008 0.93705 0.87520 0.96594 0.90025 0.84656 0.85444 0.83588 0.83545 0.82666 0.87890 0.88120 0.87917 0.87645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -21.10 9.35 55.43 0.52 -20.58 16 2 C 0.09 2.33 5.21 -17.82 -0.09 2.24 16 3 Si 0.88 20.36 29.55 -169.99 -5.02 15.34 16 4 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.52 -13.33 8.62 -34.44 -0.30 -13.63 16 8 H 0.05 1.43 7.83 -52.49 -0.41 1.01 16 9 C 0.25 5.71 2.48 -70.02 -0.17 5.53 16 10 H 0.00 0.04 7.73 -51.93 -0.40 -0.37 16 11 N -0.63 -13.37 4.29 -110.45 -0.47 -13.85 16 12 C 0.11 2.01 5.63 -4.98 -0.03 1.99 16 13 C -0.11 -1.81 5.41 -104.48 -0.57 -2.37 16 14 C -0.05 -0.80 9.86 -39.28 -0.39 -1.19 16 15 C -0.18 -2.47 10.11 -39.44 -0.40 -2.87 16 16 C 0.08 1.13 11.18 -17.55 -0.20 0.93 16 17 N -0.49 -7.95 10.36 -13.25 -0.14 -8.09 16 18 C 0.09 1.48 10.86 -17.55 -0.19 1.29 16 19 C -0.04 -0.93 4.65 -104.62 -0.49 -1.41 16 20 C -0.08 -1.76 7.66 -39.59 -0.30 -2.06 16 21 C -0.14 -2.81 10.05 -39.58 -0.40 -3.20 16 22 C -0.15 -2.79 10.05 -39.58 -0.40 -3.19 16 23 C -0.14 -2.59 10.05 -39.58 -0.40 -2.99 16 24 C -0.13 -2.69 9.70 -39.58 -0.38 -3.07 16 25 H 0.25 6.38 8.31 -40.82 -0.34 6.04 16 26 H 0.31 6.35 7.60 -39.29 -0.30 6.05 16 27 H 0.02 0.28 8.01 -51.93 -0.42 -0.14 16 28 H 0.08 1.62 7.95 -51.92 -0.41 1.21 16 29 H 0.14 2.23 8.06 -52.49 -0.42 1.81 16 30 H 0.13 1.43 8.06 -52.48 -0.42 1.01 16 31 H 0.15 1.60 8.06 -52.48 -0.42 1.18 16 32 H 0.15 2.10 8.06 -52.48 -0.42 1.68 16 33 H 0.16 3.68 5.66 -52.49 -0.30 3.38 16 34 H 0.10 1.82 8.06 -52.49 -0.42 1.40 16 35 H 0.10 1.57 8.06 -52.48 -0.42 1.15 16 36 H 0.10 1.61 8.06 -52.49 -0.42 1.19 16 37 H 0.11 2.00 8.06 -52.49 -0.42 1.58 16 LS Contribution 313.94 15.07 4.73 4.73 Total: -1.00 -27.06 313.94 -9.84 -36.89 By element: Atomic # 1 Polarization: 14.33 SS G_CDS: -4.75 Total: 9.57 kcal Atomic # 6 Polarization: -19.32 SS G_CDS: -4.70 Total: -24.01 kcal Atomic # 7 Polarization: -42.43 SS G_CDS: -0.09 Total: -42.52 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.34 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -27.06 -9.84 -36.89 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055016056.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.043 kcal (2) G-P(sol) polarization free energy of solvation -27.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.892 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds