Wall clock time and date at job start Mon Mar 30 2020 07:31:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00368 * 2 1 4 4 H 1.48496 * 109.47215 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47107 * 299.99846 * 3 2 1 6 6 H 1.48495 * 109.47201 * 59.99815 * 3 2 1 7 7 C 1.37882 * 119.99898 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00427 * 189.64573 * 7 2 1 9 9 C 1.50698 * 119.99641 * 9.36989 * 7 2 1 10 10 H 1.09007 * 109.47204 * 185.72106 * 9 7 2 11 11 N 1.46897 * 109.47442 * 305.72688 * 9 7 2 12 12 C 1.46901 * 110.99898 * 274.99961 * 11 9 7 13 13 C 1.50697 * 109.47403 * 179.97438 * 12 11 9 14 14 C 1.38676 * 120.41996 * 269.72285 * 13 12 11 15 15 C 1.38624 * 118.41942 * 179.77888 * 14 13 12 16 16 C 1.38232 * 119.16048 * 0.51657 * 15 14 13 17 17 N 1.31851 * 120.76573 * 359.72442 * 16 15 14 18 18 C 1.31889 * 121.72155 * 0.02562 * 17 16 15 19 19 C 1.50705 * 109.47117 * 65.72705 * 9 7 2 20 20 C 1.38231 * 119.99730 * 271.16894 * 19 9 7 21 21 C 1.38234 * 119.99919 * 179.80656 * 20 19 9 22 22 C 1.38238 * 119.99627 * 0.40667 * 21 20 19 23 23 C 1.38230 * 120.00429 * 359.84865 * 22 21 20 24 24 C 1.38233 * 119.99779 * 91.44527 * 19 9 7 25 25 H 0.97007 * 119.99756 * 359.97438 * 1 2 3 26 26 H 1.00897 * 111.00242 * 151.05056 * 11 9 7 27 27 H 1.09003 * 109.47139 * 299.99946 * 12 11 9 28 28 H 1.09007 * 109.47047 * 59.99724 * 12 11 9 29 29 H 1.08001 * 120.79026 * 0.02562 * 14 13 12 30 30 H 1.08005 * 120.42048 * 180.21918 * 15 14 13 31 31 H 1.08004 * 119.61754 * 179.74752 * 16 15 14 32 32 H 1.08008 * 119.61323 * 180.02562 * 18 17 16 33 33 H 1.07999 * 120.00490 * 0.02562 * 20 19 9 34 34 H 1.07999 * 120.00435 * 180.23097 * 21 20 19 35 35 H 1.08007 * 119.99635 * 179.83287 * 22 21 20 36 36 H 1.07996 * 120.00331 * 179.97438 * 23 22 21 37 37 H 1.07992 * 120.00298 * 359.97438 * 24 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2125 6 1 1.8905 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0731 -1.2007 0.1572 9 6 1.2660 -2.4905 -0.2114 10 1 1.9531 -3.3262 -0.0779 11 7 0.1718 -2.5958 0.7631 12 6 0.6520 -3.1504 2.0359 13 6 -0.4955 -3.2426 3.0084 14 6 -0.7848 -2.1835 3.8555 15 6 -1.8525 -2.3110 4.7304 16 6 -2.5814 -3.4856 4.7368 17 7 -2.2744 -4.4743 3.9204 18 6 -1.2688 -4.3860 3.0716 19 6 0.7000 -2.5238 -1.6077 20 6 -0.5580 -2.0076 -1.8560 21 6 -1.0756 -2.0345 -3.1375 22 6 -0.3385 -2.5852 -4.1691 23 6 0.9174 -3.1062 -3.9199 24 6 1.4366 -3.0757 -2.6390 25 1 -0.4850 0.8401 0.0004 26 1 -0.5897 -3.1450 0.3938 27 1 1.0656 -4.1445 1.8660 28 1 1.4248 -2.5006 2.4468 29 1 -0.1949 -1.2791 3.8314 30 1 -2.1087 -1.5048 5.4019 31 1 -3.4122 -3.5945 5.4183 32 1 -1.0476 -5.2168 2.4178 33 1 -1.1352 -1.5800 -1.0494 34 1 -2.0570 -1.6278 -3.3322 35 1 -0.7440 -2.6087 -5.1699 36 1 1.4931 -3.5368 -4.7258 37 1 2.4178 -3.4827 -2.4443 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000055016056.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:31:13 Heat of formation + Delta-G solvation = 57.683232 kcal Electronic energy + Delta-G solvation = -19698.411646 eV Core-core repulsion = 16826.092308 eV Total energy + Delta-G solvation = -2872.319338 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.127 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.98253 -39.92438 -37.13605 -34.60916 -33.20926 -32.57768 -31.47383 -30.86539 -28.32940 -26.28597 -24.37107 -24.12684 -23.11079 -22.24759 -21.58969 -18.20898 -17.95281 -17.48558 -17.21616 -16.69733 -16.24105 -15.73806 -15.51990 -15.30124 -14.79692 -14.64568 -14.17614 -14.04360 -13.85262 -13.74664 -13.50137 -13.19985 -12.95297 -12.80702 -12.60742 -12.32063 -11.98701 -11.69449 -11.42009 -11.10294 -10.63383 -10.45322 -10.31775 -9.86220 -9.47457 -9.15994 -8.61657 -7.79555 -6.04586 0.26916 0.44773 0.81066 0.92327 1.39779 1.45600 1.51793 2.49519 2.93924 3.24578 3.36604 3.61414 3.87670 4.04102 4.10174 4.20921 4.25242 4.36060 4.36177 4.50292 4.60924 4.68230 4.81943 4.85845 4.95094 4.99648 5.10163 5.19772 5.29613 5.45195 5.58247 5.60139 5.79692 5.85668 5.87202 5.99986 6.20863 6.31297 6.52527 6.59489 6.98735 7.07830 7.22269 7.62568 9.08985 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.015252 B = 0.006740 C = 0.005293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1835.327928 B = 4153.273951 C = 5288.495128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.832 5.832 2 C 0.060 3.940 3 Si 0.922 3.078 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.283 1.283 7 C -0.542 4.542 8 H 0.039 0.961 9 C 0.252 3.748 10 H -0.006 1.006 11 N -0.640 5.640 12 C 0.117 3.883 13 C -0.122 4.122 14 C -0.066 4.066 15 C -0.169 4.169 16 C 0.082 3.918 17 N -0.507 5.507 18 C 0.088 3.912 19 C -0.064 4.064 20 C -0.096 4.096 21 C -0.149 4.149 22 C -0.146 4.146 23 C -0.136 4.136 24 C -0.146 4.146 25 H 0.249 0.751 26 H 0.309 0.691 27 H 0.026 0.974 28 H 0.060 0.940 29 H 0.125 0.875 30 H 0.159 0.841 31 H 0.183 0.817 32 H 0.158 0.842 33 H 0.134 0.866 34 H 0.121 0.879 35 H 0.137 0.863 36 H 0.137 0.863 37 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.655 -5.220 2.543 6.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.465 5.465 2 C -0.147 4.147 3 Si 0.750 3.250 4 H -0.203 1.203 5 H -0.215 1.215 6 H -0.209 1.209 7 C -0.580 4.580 8 H 0.057 0.943 9 C 0.145 3.855 10 H 0.011 0.989 11 N -0.270 5.270 12 C -0.013 4.013 13 C -0.124 4.124 14 C -0.093 4.093 15 C -0.188 4.188 16 C -0.075 4.075 17 N -0.216 5.216 18 C -0.069 4.069 19 C -0.065 4.065 20 C -0.115 4.115 21 C -0.167 4.167 22 C -0.164 4.164 23 C -0.154 4.154 24 C -0.164 4.164 25 H 0.059 0.941 26 H 0.126 0.874 27 H 0.044 0.956 28 H 0.078 0.922 29 H 0.143 0.857 30 H 0.177 0.823 31 H 0.200 0.800 32 H 0.175 0.825 33 H 0.151 0.849 34 H 0.139 0.861 35 H 0.155 0.845 36 H 0.155 0.845 37 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -4.250 -5.217 2.782 7.281 hybrid contribution 1.418 1.185 -0.311 1.874 sum -2.833 -4.032 2.471 5.512 Atomic orbital electron populations 1.70171 1.05848 1.24993 1.45463 1.25264 0.95228 0.99978 0.94224 0.86109 0.79428 0.82343 0.77153 1.20310 1.21480 1.20915 1.20994 0.92678 0.91774 1.52545 0.94315 1.18054 0.88102 0.93791 0.85600 0.98865 1.60731 1.09753 1.53774 1.02718 1.20588 0.93645 0.96619 0.90463 1.20920 0.98766 0.95238 0.97468 1.21636 0.96567 0.97700 0.93372 1.22406 0.95977 1.00161 1.00252 1.23210 0.99098 0.88893 0.96343 1.67672 1.16258 1.31891 1.05805 1.22722 0.90974 0.97019 0.96138 1.20497 0.93734 0.95037 0.97239 1.21502 0.96147 0.96417 0.97423 1.21407 1.00459 1.01225 0.93630 1.21234 0.95332 1.00581 0.99253 1.21202 0.96485 1.01363 0.96320 1.21112 0.99719 1.01943 0.93673 0.94102 0.87358 0.95588 0.92165 0.85728 0.82291 0.79971 0.82502 0.84883 0.86060 0.84520 0.84508 0.86989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -43.45 9.35 21.45 0.20 -43.25 16 2 C 0.06 3.12 5.21 84.66 0.44 3.56 16 3 Si 0.92 42.45 29.55 68.60 2.03 44.48 16 4 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 5 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 6 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 7 C -0.54 -28.50 8.62 25.60 0.22 -28.28 16 8 H 0.04 2.09 7.83 -2.91 -0.02 2.07 16 9 C 0.25 11.89 2.48 43.42 0.11 12.00 16 10 H -0.01 -0.30 7.73 -2.38 -0.02 -0.32 16 11 N -0.64 -27.98 4.29 -503.36 -2.16 -30.14 16 12 C 0.12 4.48 5.63 85.56 0.48 4.96 16 13 C -0.12 -4.17 5.41 -19.77 -0.11 -4.28 16 14 C -0.07 -2.15 9.86 22.47 0.22 -1.93 16 15 C -0.17 -4.40 10.11 22.36 0.23 -4.18 16 16 C 0.08 2.11 11.18 84.69 0.95 3.06 16 17 N -0.51 -15.67 10.36 -195.83 -2.03 -17.70 16 18 C 0.09 2.80 10.86 84.67 0.92 3.72 16 19 C -0.06 -2.88 4.65 -19.87 -0.09 -2.97 16 20 C -0.10 -4.27 7.66 22.27 0.17 -4.10 16 21 C -0.15 -5.67 10.05 22.27 0.22 -5.45 16 22 C -0.15 -4.92 10.05 22.27 0.22 -4.69 16 23 C -0.14 -4.67 10.05 22.27 0.22 -4.44 16 24 C -0.15 -5.85 9.70 22.27 0.22 -5.64 16 25 H 0.25 12.77 8.31 -92.70 -0.77 12.00 16 26 H 0.31 13.22 7.60 -89.70 -0.68 12.54 16 27 H 0.03 0.94 8.01 -2.39 -0.02 0.92 16 28 H 0.06 2.53 7.95 -2.38 -0.02 2.52 16 29 H 0.12 4.25 8.06 -2.91 -0.02 4.22 16 30 H 0.16 3.09 8.06 -2.91 -0.02 3.06 16 31 H 0.18 3.30 8.06 -2.91 -0.02 3.27 16 32 H 0.16 4.48 8.06 -2.91 -0.02 4.46 16 33 H 0.13 6.47 5.66 -2.91 -0.02 6.46 16 34 H 0.12 4.07 8.06 -2.91 -0.02 4.04 16 35 H 0.14 3.62 8.06 -2.91 -0.02 3.60 16 36 H 0.14 3.73 8.06 -2.91 -0.02 3.71 16 37 H 0.11 4.22 8.06 -2.91 -0.02 4.20 16 Total: -1.00 -58.26 313.94 2.85 -55.42 By element: Atomic # 1 Polarization: 29.46 SS G_CDS: 0.39 Total: 29.84 kcal Atomic # 6 Polarization: -43.07 SS G_CDS: 4.42 Total: -38.65 kcal Atomic # 7 Polarization: -87.10 SS G_CDS: -3.99 Total: -91.09 kcal Atomic # 14 Polarization: 42.45 SS G_CDS: 2.03 Total: 44.48 kcal Total: -58.26 2.85 -55.42 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055016056.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.098 kcal (2) G-P(sol) polarization free energy of solvation -58.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.415 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds