Wall clock time and date at job start Mon Mar 30 2020 07:31:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86805 * 119.99795 * 2 1 4 4 H 1.48496 * 109.47303 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.46920 * 299.99945 * 3 2 1 6 6 H 1.48507 * 109.47047 * 59.99712 * 3 2 1 7 7 C 1.37879 * 120.00357 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00108 * 180.54848 * 7 2 1 9 9 C 1.50702 * 119.99602 * 0.54714 * 7 2 1 10 10 H 1.08999 * 109.47245 * 335.12834 * 9 7 2 11 11 N 1.46898 * 109.46702 * 215.12968 * 9 7 2 12 12 C 1.46896 * 111.00262 * 85.00119 * 11 9 7 13 13 C 1.50700 * 109.47212 * 179.97438 * 12 11 9 14 14 C 1.38666 * 120.41550 * 90.00203 * 13 12 11 15 15 C 1.38632 * 118.41798 * 180.27090 * 14 13 12 16 16 C 1.38233 * 119.16296 * 359.52904 * 15 14 13 17 17 N 1.31857 * 120.75760 * 0.48197 * 16 15 14 18 18 C 1.31880 * 121.73088 * 359.74391 * 17 16 15 19 19 C 1.50702 * 109.46718 * 95.12977 * 9 7 2 20 20 C 1.38237 * 119.99855 * 73.62329 * 19 9 7 21 21 C 1.38233 * 119.99702 * 179.78456 * 20 19 9 22 22 C 1.38232 * 120.00146 * 0.44008 * 21 20 19 23 23 C 1.38243 * 119.99844 * 359.81371 * 22 21 20 24 24 C 1.38230 * 120.00031 * 359.97438 * 23 22 21 25 25 H 0.96997 * 119.99896 * 0.02562 * 1 2 3 26 26 H 1.00907 * 111.00050 * 321.04509 * 11 9 7 27 27 H 1.09005 * 109.46819 * 59.99730 * 12 11 9 28 28 H 1.09000 * 109.47056 * 300.00244 * 12 11 9 29 29 H 1.07999 * 120.79128 * 0.02562 * 14 13 12 30 30 H 1.08003 * 120.42272 * 179.74813 * 15 14 13 31 31 H 1.07993 * 119.61941 * 180.23094 * 16 15 14 32 32 H 1.07997 * 119.62022 * 180.02562 * 18 17 16 33 33 H 1.07999 * 120.00089 * 359.97438 * 20 19 9 34 34 H 1.08006 * 120.00130 * 180.27903 * 21 20 19 35 35 H 1.08000 * 120.00042 * 179.83158 * 22 21 20 36 36 H 1.08001 * 119.99643 * 179.97438 * 23 22 21 37 37 H 1.07993 * 120.00073 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3466 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0095 9 6 1.2512 -2.4991 -0.0113 10 1 0.2585 -2.3495 0.4133 11 7 1.9808 -3.4929 0.7874 12 6 1.6366 -3.3797 2.2110 13 6 2.4021 -4.4130 2.9966 14 6 3.6525 -4.1150 3.5168 15 6 4.3226 -5.0984 4.2280 16 6 3.7221 -6.3312 4.4022 17 7 2.5313 -6.5793 3.8931 18 6 1.8670 -5.6695 3.2074 19 6 1.1218 -2.9915 -1.4298 20 6 2.2211 -3.5187 -2.0814 21 6 2.1013 -3.9744 -3.3809 22 6 0.8845 -3.8945 -4.0320 23 6 -0.2135 -3.3624 -3.3821 24 6 -0.0948 -2.9108 -2.0811 25 1 -0.4850 0.8400 -0.0004 26 1 2.9766 -3.4082 0.6483 27 1 0.5668 -3.5444 2.3403 28 1 1.8968 -2.3838 2.5696 29 1 4.0955 -3.1414 3.3679 30 1 5.3000 -4.9027 4.6438 31 1 4.2359 -7.1014 4.9582 32 1 0.8935 -5.9093 2.8059 33 1 3.1727 -3.5773 -1.5741 34 1 2.9591 -4.3904 -3.8885 35 1 0.7916 -4.2480 -5.0483 36 1 -1.1641 -3.2997 -3.8910 37 1 -0.9525 -2.4948 -1.5736 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000055016058.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:31:17 Heat of formation + Delta-G solvation = 54.061351 kcal Electronic energy + Delta-G solvation = -19322.293397 eV Core-core repulsion = 16449.817002 eV Total energy + Delta-G solvation = -2872.476395 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.127 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.89934 -38.36244 -35.72363 -33.17679 -31.96470 -31.35572 -29.98809 -29.64375 -26.58333 -24.73767 -23.31809 -22.73400 -21.73506 -21.02625 -19.82495 -17.03771 -16.77154 -16.14069 -15.98611 -15.04418 -14.89463 -14.26172 -14.19094 -13.76852 -13.59906 -13.03759 -12.97054 -12.82976 -12.49660 -12.37949 -11.95261 -11.79969 -11.30199 -11.24939 -11.07552 -10.80383 -10.30857 -10.21024 -9.99131 -9.60881 -9.53167 -9.22506 -8.81297 -8.66041 -8.00719 -7.73789 -7.37313 -6.20601 -4.32118 1.33330 1.49513 2.33214 2.38903 3.16479 3.25849 3.28115 4.02399 4.25311 4.64194 4.76537 5.00927 5.11400 5.12372 5.22466 5.30469 5.53654 5.66190 5.69104 5.77435 5.88650 5.94581 6.15639 6.29584 6.35075 6.41766 6.45449 6.60137 6.67387 6.86148 6.93184 7.02371 7.15881 7.34701 7.45848 7.63318 7.67927 7.92915 8.01489 8.05496 8.17436 8.47377 8.81168 9.35498 10.81535 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.013512 B = 0.006318 C = 0.004791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2071.757207 B = 4430.745738 C = 5843.116967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.075 3.925 3 Si 0.890 3.110 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.283 1.283 7 C -0.540 4.540 8 H 0.058 0.942 9 C 0.228 3.772 10 H 0.075 0.925 11 N -0.682 5.682 12 C 0.108 3.892 13 C -0.114 4.114 14 C -0.074 4.074 15 C -0.176 4.176 16 C 0.082 3.918 17 N -0.490 5.490 18 C 0.113 3.887 19 C -0.009 4.009 20 C -0.111 4.111 21 C -0.132 4.132 22 C -0.155 4.155 23 C -0.129 4.129 24 C -0.114 4.114 25 H 0.265 0.735 26 H 0.326 0.674 27 H 0.074 0.926 28 H 0.047 0.953 29 H 0.132 0.868 30 H 0.129 0.871 31 H 0.148 0.852 32 H 0.155 0.845 33 H 0.108 0.892 34 H 0.104 0.896 35 H 0.104 0.896 36 H 0.106 0.894 37 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.377 -7.029 3.190 8.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.130 4.130 3 Si 0.718 3.282 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.209 1.209 7 C -0.579 4.579 8 H 0.076 0.924 9 C 0.120 3.880 10 H 0.093 0.907 11 N -0.311 5.311 12 C -0.022 4.022 13 C -0.117 4.117 14 C -0.100 4.100 15 C -0.196 4.196 16 C -0.075 4.075 17 N -0.199 5.199 18 C -0.045 4.045 19 C -0.011 4.011 20 C -0.130 4.130 21 C -0.151 4.151 22 C -0.173 4.173 23 C -0.147 4.147 24 C -0.132 4.132 25 H 0.075 0.925 26 H 0.143 0.857 27 H 0.092 0.908 28 H 0.065 0.935 29 H 0.150 0.850 30 H 0.147 0.853 31 H 0.166 0.834 32 H 0.172 0.828 33 H 0.126 0.874 34 H 0.122 0.878 35 H 0.122 0.878 36 H 0.124 0.876 37 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 3.359 -8.228 3.205 9.448 hybrid contribution 1.418 2.814 -0.110 3.153 sum 4.777 -5.414 3.095 7.855 Atomic orbital electron populations 1.69885 1.05937 1.27120 1.48677 1.24973 0.94872 0.99330 0.93860 0.86563 0.80230 0.83624 0.77795 1.19702 1.20751 1.20863 1.21651 0.93049 0.90826 1.52365 0.92401 1.18404 0.96738 0.86791 0.86030 0.90691 1.61003 1.11609 1.53747 1.04702 1.20651 0.98321 0.94374 0.88852 1.21158 0.95570 0.97073 0.97856 1.21588 0.94021 0.99550 0.94863 1.22070 1.01247 0.95029 1.01244 1.22636 0.91749 0.95687 0.97405 1.67669 1.08304 1.34744 1.09172 1.22687 0.99474 0.88638 0.93674 1.20408 0.91601 0.90867 0.98181 1.20808 0.98594 0.99539 0.94047 1.20943 0.96887 1.01718 0.95514 1.20787 0.93742 1.03632 0.99164 1.20971 0.97828 1.00458 0.95473 1.21041 0.98103 0.99563 0.94523 0.92526 0.85722 0.90777 0.93481 0.85018 0.85336 0.83426 0.82797 0.87396 0.87758 0.87833 0.87627 0.86420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.48 12.78 55.43 0.71 -22.77 16 2 C 0.07 1.92 5.46 -17.82 -0.10 1.82 16 3 Si 0.89 20.25 29.54 -169.99 -5.02 15.23 16 4 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 5 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 6 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 7 C -0.54 -13.48 8.06 -34.44 -0.28 -13.76 16 8 H 0.06 1.45 7.75 -52.49 -0.41 1.04 16 9 C 0.23 5.21 2.30 -70.02 -0.16 5.05 16 10 H 0.08 1.91 6.75 -51.93 -0.35 1.56 16 11 N -0.68 -13.37 5.84 -110.46 -0.64 -14.02 16 12 C 0.11 1.92 5.63 -4.98 -0.03 1.89 16 13 C -0.11 -1.77 5.41 -104.48 -0.57 -2.34 16 14 C -0.07 -1.02 9.86 -39.28 -0.39 -1.41 16 15 C -0.18 -2.13 10.11 -39.44 -0.40 -2.53 16 16 C 0.08 1.05 11.18 -17.54 -0.20 0.86 16 17 N -0.49 -7.47 10.36 -13.25 -0.14 -7.61 16 18 C 0.11 1.73 10.86 -17.55 -0.19 1.54 16 19 C -0.01 -0.21 4.93 -104.62 -0.52 -0.72 16 20 C -0.11 -2.28 9.26 -39.58 -0.37 -2.64 16 21 C -0.13 -2.43 10.05 -39.59 -0.40 -2.83 16 22 C -0.15 -2.76 10.05 -39.58 -0.40 -3.16 16 23 C -0.13 -2.44 10.05 -39.58 -0.40 -2.84 16 24 C -0.11 -2.45 9.67 -39.59 -0.38 -2.83 16 25 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16 26 H 0.33 6.32 7.88 -39.29 -0.31 6.01 16 27 H 0.07 1.32 8.01 -51.93 -0.42 0.91 16 28 H 0.05 0.90 7.95 -51.93 -0.41 0.49 16 29 H 0.13 1.70 8.06 -52.49 -0.42 1.28 16 30 H 0.13 1.18 8.06 -52.48 -0.42 0.76 16 31 H 0.15 1.43 8.06 -52.49 -0.42 1.01 16 32 H 0.15 2.21 8.06 -52.49 -0.42 1.79 16 33 H 0.11 2.11 7.48 -52.49 -0.39 1.71 16 34 H 0.10 1.62 8.06 -52.48 -0.42 1.20 16 35 H 0.10 1.54 8.06 -52.49 -0.42 1.12 16 36 H 0.11 1.72 8.06 -52.49 -0.42 1.30 16 37 H 0.12 2.61 7.99 -52.49 -0.42 2.19 16 LS Contribution 321.25 15.07 4.84 4.84 Total: -1.00 -27.42 321.25 -9.82 -37.24 By element: Atomic # 1 Polarization: 15.80 SS G_CDS: -4.80 Total: 11.00 kcal Atomic # 6 Polarization: -19.15 SS G_CDS: -4.76 Total: -23.91 kcal Atomic # 7 Polarization: -44.32 SS G_CDS: -0.07 Total: -44.40 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -5.02 Total: 15.23 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -27.42 -9.82 -37.24 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055016058.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.303 kcal (2) G-P(sol) polarization free energy of solvation -27.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.241 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds