Wall clock time and date at job start Mon Mar 30 2020 07:31:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86805 * 119.99795 * 2 1 4 4 H 1.48496 * 109.47303 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.46920 * 299.99945 * 3 2 1 6 6 H 1.48507 * 109.47047 * 59.99712 * 3 2 1 7 7 C 1.37879 * 120.00357 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00108 * 180.54848 * 7 2 1 9 9 C 1.50702 * 119.99602 * 0.54714 * 7 2 1 10 10 H 1.08999 * 109.47245 * 335.12834 * 9 7 2 11 11 N 1.46898 * 109.46702 * 215.12968 * 9 7 2 12 12 C 1.46896 * 111.00262 * 85.00119 * 11 9 7 13 13 C 1.50700 * 109.47212 * 179.97438 * 12 11 9 14 14 C 1.38666 * 120.41550 * 90.00203 * 13 12 11 15 15 C 1.38632 * 118.41798 * 180.27090 * 14 13 12 16 16 C 1.38233 * 119.16296 * 359.52904 * 15 14 13 17 17 N 1.31857 * 120.75760 * 0.48197 * 16 15 14 18 18 C 1.31880 * 121.73088 * 359.74391 * 17 16 15 19 19 C 1.50702 * 109.46718 * 95.12977 * 9 7 2 20 20 C 1.38237 * 119.99855 * 73.62329 * 19 9 7 21 21 C 1.38233 * 119.99702 * 179.78456 * 20 19 9 22 22 C 1.38232 * 120.00146 * 0.44008 * 21 20 19 23 23 C 1.38243 * 119.99844 * 359.81371 * 22 21 20 24 24 C 1.38230 * 120.00031 * 359.97438 * 23 22 21 25 25 H 0.96997 * 119.99896 * 0.02562 * 1 2 3 26 26 H 1.00907 * 111.00050 * 321.04509 * 11 9 7 27 27 H 1.09005 * 109.46819 * 59.99730 * 12 11 9 28 28 H 1.09000 * 109.47056 * 300.00244 * 12 11 9 29 29 H 1.07999 * 120.79128 * 0.02562 * 14 13 12 30 30 H 1.08003 * 120.42272 * 179.74813 * 15 14 13 31 31 H 1.07993 * 119.61941 * 180.23094 * 16 15 14 32 32 H 1.07997 * 119.62022 * 180.02562 * 18 17 16 33 33 H 1.07999 * 120.00089 * 359.97438 * 20 19 9 34 34 H 1.08006 * 120.00130 * 180.27903 * 21 20 19 35 35 H 1.08000 * 120.00042 * 179.83158 * 22 21 20 36 36 H 1.08001 * 119.99643 * 179.97438 * 23 22 21 37 37 H 1.07993 * 120.00073 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3466 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0095 9 6 1.2512 -2.4991 -0.0113 10 1 0.2585 -2.3495 0.4133 11 7 1.9808 -3.4929 0.7874 12 6 1.6366 -3.3797 2.2110 13 6 2.4021 -4.4130 2.9966 14 6 3.6525 -4.1150 3.5168 15 6 4.3226 -5.0984 4.2280 16 6 3.7221 -6.3312 4.4022 17 7 2.5313 -6.5793 3.8931 18 6 1.8670 -5.6695 3.2074 19 6 1.1218 -2.9915 -1.4298 20 6 2.2211 -3.5187 -2.0814 21 6 2.1013 -3.9744 -3.3809 22 6 0.8845 -3.8945 -4.0320 23 6 -0.2135 -3.3624 -3.3821 24 6 -0.0948 -2.9108 -2.0811 25 1 -0.4850 0.8400 -0.0004 26 1 2.9766 -3.4082 0.6483 27 1 0.5668 -3.5444 2.3403 28 1 1.8968 -2.3838 2.5696 29 1 4.0955 -3.1414 3.3679 30 1 5.3000 -4.9027 4.6438 31 1 4.2359 -7.1014 4.9582 32 1 0.8935 -5.9093 2.8059 33 1 3.1727 -3.5773 -1.5741 34 1 2.9591 -4.3904 -3.8885 35 1 0.7916 -4.2480 -5.0483 36 1 -1.1641 -3.2997 -3.8910 37 1 -0.9525 -2.4948 -1.5736 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000055016058.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:31:17 Heat of formation + Delta-G solvation = 39.179027 kcal Electronic energy + Delta-G solvation = -19322.938743 eV Core-core repulsion = 16449.817002 eV Total energy + Delta-G solvation = -2873.121741 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.127 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.02610 -39.92206 -37.29826 -34.81119 -33.39041 -32.66460 -31.51602 -31.06357 -28.29106 -26.29620 -24.48472 -24.28852 -23.19241 -22.36902 -21.47380 -18.81179 -17.98664 -17.55255 -17.20932 -16.76925 -16.31836 -15.84879 -15.56302 -15.24036 -15.01964 -14.49465 -14.35440 -13.99560 -13.93311 -13.70206 -13.60520 -13.42408 -13.04291 -12.91319 -12.79011 -12.28595 -12.00975 -11.80192 -11.62290 -11.34801 -10.73337 -10.64182 -10.35565 -9.91628 -9.54681 -9.30818 -9.06322 -8.13378 -6.32683 0.23758 0.39262 0.78107 0.85239 1.34677 1.38378 1.47047 2.35812 2.90182 3.07676 3.27673 3.57743 3.78463 3.96895 4.07420 4.17616 4.20079 4.28220 4.34122 4.46579 4.55374 4.71299 4.83780 4.86909 4.93196 4.99006 5.06755 5.15966 5.24816 5.42833 5.47383 5.49993 5.62747 5.82846 5.84549 5.90428 5.98169 6.15859 6.30902 6.45930 6.80336 6.90431 7.07931 7.37109 8.85507 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.013512 B = 0.006318 C = 0.004791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2071.757207 B = 4430.745738 C = 5843.116967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.027 3.973 3 Si 0.947 3.053 4 H -0.266 1.266 5 H -0.285 1.285 6 H -0.280 1.280 7 C -0.543 4.543 8 H 0.055 0.945 9 C 0.237 3.763 10 H 0.038 0.962 11 N -0.674 5.674 12 C 0.117 3.883 13 C -0.128 4.128 14 C -0.080 4.080 15 C -0.164 4.164 16 C 0.083 3.917 17 N -0.510 5.510 18 C 0.101 3.899 19 C -0.037 4.037 20 C -0.125 4.125 21 C -0.129 4.129 22 C -0.148 4.148 23 C -0.130 4.130 24 C -0.140 4.140 25 H 0.263 0.737 26 H 0.329 0.671 27 H 0.062 0.938 28 H 0.028 0.972 29 H 0.139 0.861 30 H 0.166 0.834 31 H 0.184 0.816 32 H 0.152 0.848 33 H 0.111 0.889 34 H 0.139 0.861 35 H 0.143 0.857 36 H 0.131 0.869 37 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.614 -8.121 2.534 10.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.174 4.174 3 Si 0.773 3.227 4 H -0.190 1.190 5 H -0.211 1.211 6 H -0.206 1.206 7 C -0.582 4.582 8 H 0.073 0.927 9 C 0.129 3.871 10 H 0.056 0.944 11 N -0.302 5.302 12 C -0.013 4.013 13 C -0.130 4.130 14 C -0.107 4.107 15 C -0.183 4.183 16 C -0.075 4.075 17 N -0.219 5.219 18 C -0.056 4.056 19 C -0.038 4.038 20 C -0.143 4.143 21 C -0.147 4.147 22 C -0.166 4.166 23 C -0.148 4.148 24 C -0.159 4.159 25 H 0.073 0.927 26 H 0.146 0.854 27 H 0.081 0.919 28 H 0.046 0.954 29 H 0.157 0.843 30 H 0.184 0.816 31 H 0.201 0.799 32 H 0.169 0.831 33 H 0.129 0.871 34 H 0.157 0.843 35 H 0.161 0.839 36 H 0.149 0.851 37 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 5.604 -9.330 2.555 11.180 hybrid contribution 0.762 3.043 0.106 3.139 sum 6.366 -6.287 2.661 9.335 Atomic orbital electron populations 1.70012 1.07115 1.27492 1.50175 1.25648 0.95536 1.02178 0.94050 0.85683 0.79329 0.80221 0.77498 1.19038 1.21063 1.20567 1.21882 0.92932 0.91917 1.51462 0.92710 1.18120 0.94851 0.86999 0.87166 0.94399 1.60960 1.11380 1.52364 1.05526 1.20495 0.98186 0.94416 0.88176 1.20883 0.96541 0.96584 0.99040 1.21781 0.93412 1.00560 0.94902 1.22432 1.02303 0.93899 0.99679 1.23300 0.90873 0.96877 0.96402 1.67706 1.09630 1.34796 1.09782 1.22659 0.99785 0.88779 0.94355 1.20403 0.92810 0.92766 0.97813 1.20931 0.98038 1.00029 0.95316 1.21349 0.98423 1.00348 0.94540 1.21246 0.92778 1.01900 1.00672 1.21276 0.99692 0.99518 0.94328 1.21041 0.97437 1.01255 0.96136 0.92746 0.85446 0.91918 0.95350 0.84326 0.81605 0.79929 0.83079 0.87072 0.84292 0.83880 0.85104 0.88697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.73 12.78 21.45 0.27 -50.46 16 2 C 0.03 1.45 5.46 84.65 0.46 1.91 16 3 Si 0.95 42.23 29.54 68.60 2.03 44.26 16 4 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 5 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 6 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 7 C -0.54 -27.96 8.06 25.60 0.21 -27.76 16 8 H 0.05 2.79 7.75 -2.91 -0.02 2.77 16 9 C 0.24 11.39 2.30 43.42 0.10 11.49 16 10 H 0.04 2.08 6.75 -2.39 -0.02 2.07 16 11 N -0.67 -27.56 5.84 -503.38 -2.94 -30.50 16 12 C 0.12 4.41 5.63 85.56 0.48 4.89 16 13 C -0.13 -4.04 5.41 -19.77 -0.11 -4.15 16 14 C -0.08 -2.13 9.86 22.47 0.22 -1.91 16 15 C -0.16 -3.48 10.11 22.36 0.23 -3.25 16 16 C 0.08 1.88 11.18 84.69 0.95 2.83 16 17 N -0.51 -14.98 10.36 -195.84 -2.03 -17.00 16 18 C 0.10 3.14 10.86 84.67 0.92 4.06 16 19 C -0.04 -1.68 4.93 -19.86 -0.10 -1.78 16 20 C -0.12 -5.02 9.26 22.27 0.21 -4.81 16 21 C -0.13 -4.37 10.05 22.27 0.22 -4.14 16 22 C -0.15 -4.81 10.05 22.27 0.22 -4.58 16 23 C -0.13 -4.77 10.05 22.27 0.22 -4.54 16 24 C -0.14 -6.22 9.67 22.27 0.22 -6.01 16 25 H 0.26 14.05 8.31 -92.71 -0.77 13.28 16 26 H 0.33 13.05 7.88 -89.69 -0.71 12.34 16 27 H 0.06 2.44 8.01 -2.38 -0.02 2.42 16 28 H 0.03 1.16 7.95 -2.39 -0.02 1.14 16 29 H 0.14 3.44 8.06 -2.91 -0.02 3.42 16 30 H 0.17 2.28 8.06 -2.91 -0.02 2.26 16 31 H 0.18 2.79 8.06 -2.91 -0.02 2.77 16 32 H 0.15 4.58 8.06 -2.91 -0.02 4.56 16 33 H 0.11 4.29 7.48 -2.91 -0.02 4.26 16 34 H 0.14 3.73 8.06 -2.91 -0.02 3.70 16 35 H 0.14 3.54 8.06 -2.91 -0.02 3.51 16 36 H 0.13 4.02 8.06 -2.91 -0.02 4.00 16 37 H 0.09 4.53 7.99 -2.91 -0.02 4.51 16 Total: -1.00 -60.97 321.25 2.14 -58.83 By element: Atomic # 1 Polarization: 32.28 SS G_CDS: 0.36 Total: 32.64 kcal Atomic # 6 Polarization: -42.21 SS G_CDS: 4.45 Total: -37.76 kcal Atomic # 7 Polarization: -93.27 SS G_CDS: -4.69 Total: -97.97 kcal Atomic # 14 Polarization: 42.23 SS G_CDS: 2.03 Total: 44.26 kcal Total: -60.97 2.14 -58.83 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055016058.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.007 kcal (2) G-P(sol) polarization free energy of solvation -60.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.828 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds