Wall clock time and date at job start Mon Mar 30 2020 07:31:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86802 * 119.99830 * 2 1 4 4 H 1.48497 * 109.47159 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47179 * 300.00025 * 3 2 1 6 6 H 1.48503 * 109.46817 * 60.00004 * 3 2 1 7 7 C 1.37880 * 120.00156 * 179.97438 * 2 1 3 8 8 H 1.07992 * 119.99931 * 182.52131 * 7 2 1 9 9 C 1.50696 * 119.99741 * 2.53118 * 7 2 1 10 10 H 1.09007 * 109.47133 * 174.79573 * 9 7 2 11 11 N 1.46897 * 109.47661 * 54.79229 * 9 7 2 12 12 C 1.46903 * 110.99701 * 84.99930 * 11 9 7 13 13 C 1.50708 * 109.46841 * 180.02562 * 12 11 9 14 14 C 1.38657 * 120.78479 * 269.71655 * 13 12 11 15 15 C 1.38207 * 119.15862 * 179.80007 * 14 13 12 16 16 N 1.31872 * 120.76147 * 0.48359 * 15 14 13 17 17 C 1.31864 * 121.72965 * 359.75186 * 16 15 14 18 18 C 1.38205 * 120.76294 * 0.02562 * 17 16 15 19 19 C 1.50700 * 109.47279 * 294.79023 * 9 7 2 20 20 C 1.38237 * 119.99923 * 90.50284 * 19 9 7 21 21 C 1.38230 * 120.00034 * 180.02562 * 20 19 9 22 22 C 1.38230 * 120.00382 * 359.96129 * 21 20 19 23 23 C 1.38240 * 119.99864 * 359.97438 * 22 21 20 24 24 C 1.38234 * 120.00155 * 270.48991 * 19 9 7 25 25 H 0.96999 * 119.99883 * 0.02562 * 1 2 3 26 26 H 1.00896 * 110.99837 * 321.04807 * 11 9 7 27 27 H 1.09001 * 109.47499 * 299.99932 * 12 11 9 28 28 H 1.09001 * 109.47444 * 60.00571 * 12 11 9 29 29 H 1.07997 * 120.41746 * 0.02562 * 14 13 12 30 30 H 1.07993 * 119.61735 * 180.20771 * 15 14 13 31 31 H 1.08004 * 119.62262 * 179.97438 * 17 16 15 32 32 H 1.07999 * 120.41986 * 179.97438 * 18 17 16 33 33 H 1.08002 * 119.99728 * 359.97438 * 20 19 9 34 34 H 1.08004 * 120.00107 * 179.97438 * 21 20 19 35 35 H 1.07995 * 120.00370 * 179.72251 * 22 21 20 36 36 H 1.07994 * 120.00362 * 179.97438 * 23 22 21 37 37 H 1.07992 * 120.00262 * 359.97438 * 24 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0838 -1.1944 0.0417 9 6 1.2522 -2.4985 -0.0565 10 1 1.9603 -3.3230 -0.1406 11 7 0.3598 -2.4986 -1.2233 12 6 1.0741 -2.9302 -2.4323 13 6 0.1287 -2.9170 -3.6059 14 6 -0.6103 -4.0432 -3.9346 15 6 -1.4704 -3.9925 -5.0152 16 7 -1.5849 -2.8936 -5.7352 17 6 -0.8944 -1.8058 -5.4547 18 6 -0.0182 -1.7805 -4.3863 19 6 0.4364 -2.6632 1.1998 20 6 -0.8629 -2.1935 1.2468 21 6 -1.6110 -2.3441 2.3993 22 6 -1.0603 -2.9652 3.5046 23 6 0.2385 -3.4361 3.4573 24 6 0.9872 -3.2843 2.3051 25 1 -0.4850 0.8400 -0.0004 26 1 -0.0611 -1.5913 -1.3566 27 1 1.9035 -2.2502 -2.6267 28 1 1.4585 -3.9397 -2.2863 29 1 -0.5178 -4.9474 -3.3512 30 1 -2.0521 -4.8643 -5.2758 31 1 -1.0144 -0.9245 -6.0675 32 1 0.5449 -0.8866 -4.1618 33 1 -1.2931 -1.7081 0.3832 34 1 -2.6260 -1.9768 2.4361 35 1 -1.6433 -3.0789 4.4066 36 1 0.6690 -3.9210 4.3209 37 1 2.0020 -3.6519 2.2683 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000055016070.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:31:24 Heat of formation + Delta-G solvation = 61.935973 kcal Electronic energy + Delta-G solvation = -19708.080240 eV Core-core repulsion = 16835.945315 eV Total energy + Delta-G solvation = -2872.134926 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.127 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.76977 -38.24292 -35.74945 -33.30855 -31.38485 -30.86675 -29.94652 -29.54793 -26.78770 -24.81976 -23.11008 -22.59252 -21.55499 -20.85325 -19.85386 -16.73725 -16.46359 -15.93745 -15.64168 -15.22458 -15.04912 -14.17639 -14.04773 -13.66776 -13.48955 -13.34221 -12.75317 -12.73633 -12.35535 -12.06141 -11.70528 -11.49231 -11.33138 -11.09543 -11.04312 -10.79597 -10.41592 -10.05414 -9.78181 -9.57138 -9.26055 -9.17344 -8.82987 -8.75724 -7.81169 -7.45595 -7.16288 -6.13635 -4.41015 1.46614 1.62230 2.51361 2.62896 3.13340 3.23759 3.26381 4.14143 4.21726 4.72495 4.93059 5.06392 5.11624 5.13662 5.48943 5.50909 5.73046 5.83107 5.91211 5.94798 5.97993 6.09200 6.19534 6.36726 6.43176 6.44030 6.67084 6.75796 6.85230 6.90335 7.04228 7.14083 7.28242 7.52537 7.58189 7.75177 7.89142 7.99781 8.23615 8.24808 8.30508 8.73112 8.94027 9.31749 10.71547 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.015005 B = 0.006787 C = 0.005294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1865.600048 B = 4124.288984 C = 5287.949595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.072 3.928 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.541 4.541 8 H 0.059 0.941 9 C 0.238 3.762 10 H 0.037 0.963 11 N -0.681 5.681 12 C 0.098 3.902 13 C -0.018 4.018 14 C -0.157 4.157 15 C 0.088 3.912 16 N -0.498 5.498 17 C 0.091 3.909 18 C -0.165 4.165 19 C -0.019 4.019 20 C -0.051 4.051 21 C -0.148 4.148 22 C -0.152 4.152 23 C -0.144 4.144 24 C -0.134 4.134 25 H 0.267 0.733 26 H 0.368 0.632 27 H 0.040 0.960 28 H 0.065 0.935 29 H 0.132 0.868 30 H 0.149 0.851 31 H 0.149 0.851 32 H 0.131 0.869 33 H 0.143 0.857 34 H 0.100 0.900 35 H 0.098 0.902 36 H 0.100 0.900 37 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.120 -4.746 -3.838 6.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.131 4.131 3 Si 0.720 3.280 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.580 4.580 8 H 0.077 0.923 9 C 0.129 3.871 10 H 0.055 0.945 11 N -0.318 5.318 12 C -0.032 4.032 13 C -0.027 4.027 14 C -0.177 4.177 15 C -0.069 4.069 16 N -0.207 5.207 17 C -0.066 4.066 18 C -0.185 4.185 19 C -0.020 4.020 20 C -0.070 4.070 21 C -0.166 4.166 22 C -0.170 4.170 23 C -0.162 4.162 24 C -0.153 4.153 25 H 0.078 0.922 26 H 0.193 0.807 27 H 0.058 0.942 28 H 0.083 0.917 29 H 0.150 0.850 30 H 0.167 0.833 31 H 0.166 0.834 32 H 0.149 0.851 33 H 0.161 0.839 34 H 0.118 0.882 35 H 0.117 0.883 36 H 0.119 0.881 37 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -2.095 -5.208 -4.419 7.144 hybrid contribution 1.613 1.940 0.900 2.679 sum -0.482 -3.268 -3.520 4.827 Atomic orbital electron populations 1.69609 1.05610 1.26919 1.49293 1.25013 0.94962 0.99287 0.93863 0.86519 0.80204 0.83428 0.77844 1.19786 1.20792 1.20767 1.21744 0.93605 0.91022 1.51648 0.92265 1.18104 0.88822 0.94758 0.85374 0.94497 1.61032 1.32390 1.37419 1.00998 1.20771 0.93355 1.00415 0.88664 1.20547 0.94880 0.92602 0.94664 1.22031 0.97650 0.99651 0.98365 1.22645 0.96287 0.95936 0.92012 1.67596 1.23077 1.00047 1.30027 1.22620 0.92529 0.96056 0.95391 1.22123 1.00564 0.99235 0.96580 1.20128 0.93685 0.92359 0.95833 1.21317 0.93631 0.94255 0.97788 1.21089 0.99354 1.01482 0.94673 1.20765 0.95865 1.02428 0.97985 1.20746 0.94999 1.02933 0.97541 1.20823 0.98903 1.01770 0.93806 0.92235 0.80673 0.94183 0.91686 0.84983 0.83346 0.83353 0.85069 0.83906 0.88152 0.88337 0.88135 0.87887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -21.68 7.97 55.43 0.44 -21.24 16 2 C 0.07 1.78 5.05 -17.82 -0.09 1.69 16 3 Si 0.89 19.83 29.54 -169.99 -5.02 14.81 16 4 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 5 H -0.28 -6.20 7.11 56.52 0.40 -5.79 16 6 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 7 C -0.54 -13.46 8.63 -34.44 -0.30 -13.76 16 8 H 0.06 1.50 7.81 -52.49 -0.41 1.09 16 9 C 0.24 5.47 2.50 -70.02 -0.18 5.29 16 10 H 0.04 0.83 7.75 -51.92 -0.40 0.42 16 11 N -0.68 -14.62 5.38 -110.45 -0.59 -15.22 16 12 C 0.10 1.80 5.66 -4.97 -0.03 1.77 16 13 C -0.02 -0.31 5.43 -104.31 -0.57 -0.87 16 14 C -0.16 -2.36 9.82 -39.44 -0.39 -2.75 16 15 C 0.09 1.26 11.18 -17.55 -0.20 1.07 16 16 N -0.50 -7.85 10.36 -13.25 -0.14 -7.99 16 17 C 0.09 1.36 11.18 -17.55 -0.20 1.16 16 18 C -0.16 -2.64 9.82 -39.44 -0.39 -3.03 16 19 C -0.02 -0.43 4.79 -104.62 -0.50 -0.94 16 20 C -0.05 -1.17 7.66 -39.58 -0.30 -1.47 16 21 C -0.15 -3.05 10.05 -39.59 -0.40 -3.44 16 22 C -0.15 -2.92 10.05 -39.58 -0.40 -3.32 16 23 C -0.14 -2.78 10.05 -39.58 -0.40 -3.18 16 24 C -0.13 -2.84 9.70 -39.58 -0.38 -3.23 16 25 H 0.27 6.44 8.31 -40.82 -0.34 6.10 16 26 H 0.37 8.56 5.52 -39.29 -0.22 8.34 16 27 H 0.04 0.78 7.96 -51.93 -0.41 0.36 16 28 H 0.06 1.12 8.01 -51.93 -0.42 0.71 16 29 H 0.13 1.78 8.06 -52.49 -0.42 1.36 16 30 H 0.15 1.67 8.06 -52.49 -0.42 1.25 16 31 H 0.15 1.81 8.06 -52.48 -0.42 1.39 16 32 H 0.13 2.05 8.06 -52.49 -0.42 1.63 16 33 H 0.14 3.45 5.59 -52.49 -0.29 3.16 16 34 H 0.10 1.85 8.06 -52.48 -0.42 1.43 16 35 H 0.10 1.61 8.06 -52.49 -0.42 1.19 16 36 H 0.10 1.65 8.06 -52.49 -0.42 1.23 16 37 H 0.10 2.01 8.06 -52.49 -0.42 1.59 16 LS Contribution 311.56 15.07 4.70 4.70 Total: -1.00 -26.25 311.56 -9.99 -36.24 By element: Atomic # 1 Polarization: 18.38 SS G_CDS: -4.67 Total: 13.71 kcal Atomic # 6 Polarization: -20.30 SS G_CDS: -4.71 Total: -25.01 kcal Atomic # 7 Polarization: -44.15 SS G_CDS: -0.29 Total: -44.44 kcal Atomic # 14 Polarization: 19.83 SS G_CDS: -5.02 Total: 14.81 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -26.25 -9.99 -36.24 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055016070.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.177 kcal (2) G-P(sol) polarization free energy of solvation -26.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.241 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds