Wall clock time and date at job start Mon Mar 30 2020 07:31:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86802 * 119.99830 * 2 1 4 4 H 1.48497 * 109.47159 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47179 * 300.00025 * 3 2 1 6 6 H 1.48503 * 109.46817 * 60.00004 * 3 2 1 7 7 C 1.37880 * 120.00156 * 179.97438 * 2 1 3 8 8 H 1.07992 * 119.99931 * 182.52131 * 7 2 1 9 9 C 1.50696 * 119.99741 * 2.53118 * 7 2 1 10 10 H 1.09007 * 109.47133 * 174.79573 * 9 7 2 11 11 N 1.46897 * 109.47661 * 54.79229 * 9 7 2 12 12 C 1.46903 * 110.99701 * 84.99930 * 11 9 7 13 13 C 1.50708 * 109.46841 * 180.02562 * 12 11 9 14 14 C 1.38657 * 120.78479 * 269.71655 * 13 12 11 15 15 C 1.38207 * 119.15862 * 179.80007 * 14 13 12 16 16 N 1.31872 * 120.76147 * 0.48359 * 15 14 13 17 17 C 1.31864 * 121.72965 * 359.75186 * 16 15 14 18 18 C 1.38205 * 120.76294 * 0.02562 * 17 16 15 19 19 C 1.50700 * 109.47279 * 294.79023 * 9 7 2 20 20 C 1.38237 * 119.99923 * 90.50284 * 19 9 7 21 21 C 1.38230 * 120.00034 * 180.02562 * 20 19 9 22 22 C 1.38230 * 120.00382 * 359.96129 * 21 20 19 23 23 C 1.38240 * 119.99864 * 359.97438 * 22 21 20 24 24 C 1.38234 * 120.00155 * 270.48991 * 19 9 7 25 25 H 0.96999 * 119.99883 * 0.02562 * 1 2 3 26 26 H 1.00896 * 110.99837 * 321.04807 * 11 9 7 27 27 H 1.09001 * 109.47499 * 299.99932 * 12 11 9 28 28 H 1.09001 * 109.47444 * 60.00571 * 12 11 9 29 29 H 1.07997 * 120.41746 * 0.02562 * 14 13 12 30 30 H 1.07993 * 119.61735 * 180.20771 * 15 14 13 31 31 H 1.08004 * 119.62262 * 179.97438 * 17 16 15 32 32 H 1.07999 * 120.41986 * 179.97438 * 18 17 16 33 33 H 1.08002 * 119.99728 * 359.97438 * 20 19 9 34 34 H 1.08004 * 120.00107 * 179.97438 * 21 20 19 35 35 H 1.07995 * 120.00370 * 179.72251 * 22 21 20 36 36 H 1.07994 * 120.00362 * 179.97438 * 23 22 21 37 37 H 1.07992 * 120.00262 * 359.97438 * 24 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0838 -1.1944 0.0417 9 6 1.2522 -2.4985 -0.0565 10 1 1.9603 -3.3230 -0.1406 11 7 0.3598 -2.4986 -1.2233 12 6 1.0741 -2.9302 -2.4323 13 6 0.1287 -2.9170 -3.6059 14 6 -0.6103 -4.0432 -3.9346 15 6 -1.4704 -3.9925 -5.0152 16 7 -1.5849 -2.8936 -5.7352 17 6 -0.8944 -1.8058 -5.4547 18 6 -0.0182 -1.7805 -4.3863 19 6 0.4364 -2.6632 1.1998 20 6 -0.8629 -2.1935 1.2468 21 6 -1.6110 -2.3441 2.3993 22 6 -1.0603 -2.9652 3.5046 23 6 0.2385 -3.4361 3.4573 24 6 0.9872 -3.2843 2.3051 25 1 -0.4850 0.8400 -0.0004 26 1 -0.0611 -1.5913 -1.3566 27 1 1.9035 -2.2502 -2.6267 28 1 1.4585 -3.9397 -2.2863 29 1 -0.5178 -4.9474 -3.3512 30 1 -2.0521 -4.8643 -5.2758 31 1 -1.0144 -0.9245 -6.0675 32 1 0.5449 -0.8866 -4.1618 33 1 -1.2931 -1.7081 0.3832 34 1 -2.6260 -1.9768 2.4361 35 1 -1.6433 -3.0789 4.4066 36 1 0.6690 -3.9210 4.3209 37 1 2.0020 -3.6519 2.2683 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000055016070.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:31:23 Heat of formation + Delta-G solvation = 49.127812 kcal Electronic energy + Delta-G solvation = -19708.635644 eV Core-core repulsion = 16835.945315 eV Total energy + Delta-G solvation = -2872.690329 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.127 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.98765 -39.86007 -37.35742 -34.84858 -33.08051 -32.04334 -31.51001 -31.10966 -28.50353 -26.39432 -24.35015 -24.20815 -23.05837 -22.27757 -21.52848 -18.51964 -17.91529 -17.20086 -17.07655 -16.82282 -16.41547 -15.78055 -15.62937 -15.29621 -14.85782 -14.54575 -14.33387 -14.21988 -13.94533 -13.65613 -13.32465 -13.09607 -12.88612 -12.83725 -12.57887 -12.37786 -12.10256 -11.76945 -11.46944 -11.26469 -10.74446 -10.44860 -10.38183 -10.00078 -9.42480 -9.11389 -8.88424 -7.97895 -6.33652 0.28859 0.36407 0.89099 1.03207 1.34436 1.40478 1.47488 2.36788 2.92603 3.07729 3.39500 3.63523 3.77842 3.93733 4.17325 4.28080 4.31073 4.38783 4.40398 4.56739 4.67035 4.73984 4.79563 4.91302 4.93533 4.99131 5.14193 5.17421 5.23600 5.52568 5.57969 5.63710 5.69464 5.85678 5.92813 6.04248 6.09595 6.33531 6.50021 6.59667 6.92390 7.06879 7.13465 7.40897 8.81568 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.015005 B = 0.006787 C = 0.005294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1865.600048 B = 4124.288984 C = 5287.949595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.041 3.959 3 Si 0.941 3.059 4 H -0.277 1.277 5 H -0.276 1.276 6 H -0.286 1.286 7 C -0.559 4.559 8 H 0.045 0.955 9 C 0.238 3.762 10 H 0.032 0.968 11 N -0.680 5.680 12 C 0.102 3.898 13 C -0.036 4.036 14 C -0.159 4.159 15 C 0.090 3.910 16 N -0.511 5.511 17 C 0.091 3.909 18 C -0.177 4.177 19 C -0.044 4.044 20 C -0.071 4.071 21 C -0.156 4.156 22 C -0.149 4.149 23 C -0.141 4.141 24 C -0.150 4.150 25 H 0.266 0.734 26 H 0.357 0.643 27 H 0.024 0.976 28 H 0.074 0.926 29 H 0.147 0.853 30 H 0.183 0.817 31 H 0.175 0.825 32 H 0.127 0.873 33 H 0.123 0.877 34 H 0.118 0.882 35 H 0.134 0.866 36 H 0.135 0.865 37 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.927 -5.365 -3.317 6.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.161 4.161 3 Si 0.768 3.232 4 H -0.202 1.202 5 H -0.202 1.202 6 H -0.213 1.213 7 C -0.598 4.598 8 H 0.063 0.937 9 C 0.129 3.871 10 H 0.050 0.950 11 N -0.316 5.316 12 C -0.028 4.028 13 C -0.044 4.044 14 C -0.179 4.179 15 C -0.066 4.066 16 N -0.221 5.221 17 C -0.066 4.066 18 C -0.198 4.198 19 C -0.045 4.045 20 C -0.090 4.090 21 C -0.175 4.175 22 C -0.167 4.167 23 C -0.159 4.159 24 C -0.168 4.168 25 H 0.076 0.924 26 H 0.181 0.819 27 H 0.042 0.958 28 H 0.092 0.908 29 H 0.165 0.835 30 H 0.200 0.800 31 H 0.192 0.808 32 H 0.145 0.855 33 H 0.141 0.859 34 H 0.136 0.864 35 H 0.152 0.848 36 H 0.153 0.847 37 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -2.900 -5.839 -3.907 7.601 hybrid contribution 1.842 2.072 0.758 2.874 sum -1.058 -3.767 -3.150 5.023 Atomic orbital electron populations 1.69739 1.06017 1.27057 1.49100 1.25476 0.95644 1.01169 0.93850 0.85774 0.79013 0.80814 0.77593 1.20167 1.20181 1.21261 1.21862 0.93085 0.92410 1.52404 0.93669 1.18054 0.88967 0.93671 0.86401 0.94988 1.61023 1.32358 1.36473 1.01712 1.20740 0.93262 1.00253 0.88509 1.20486 0.95558 0.93883 0.94480 1.22215 0.97332 0.99554 0.98798 1.23174 0.95761 0.96556 0.91097 1.67690 1.23353 1.00578 1.30478 1.22996 0.91650 0.96841 0.95063 1.22187 1.01270 0.99021 0.97273 1.20235 0.94102 0.93817 0.96349 1.21210 0.94074 0.95423 0.98247 1.21354 1.00138 1.01501 0.94457 1.21170 0.96065 1.00835 0.98599 1.21146 0.94950 1.01997 0.97789 1.21065 0.99674 1.01943 0.94154 0.92428 0.81937 0.95813 0.90770 0.83517 0.80041 0.80822 0.85457 0.85933 0.86380 0.84790 0.84740 0.87087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -44.35 7.97 21.45 0.17 -44.18 16 2 C 0.04 2.06 5.05 84.65 0.43 2.48 16 3 Si 0.94 41.16 29.54 68.60 2.03 43.18 16 4 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 5 H -0.28 -11.74 7.11 99.48 0.71 -11.03 16 6 H -0.29 -12.68 7.11 99.48 0.71 -11.98 16 7 C -0.56 -28.54 8.63 25.60 0.22 -28.32 16 8 H 0.04 2.36 7.81 -2.91 -0.02 2.34 16 9 C 0.24 11.23 2.50 43.42 0.11 11.34 16 10 H 0.03 1.48 7.75 -2.38 -0.02 1.46 16 11 N -0.68 -30.02 5.38 -503.36 -2.71 -32.73 16 12 C 0.10 3.86 5.66 85.56 0.48 4.35 16 13 C -0.04 -1.20 5.43 -19.66 -0.11 -1.30 16 14 C -0.16 -4.62 9.82 22.36 0.22 -4.40 16 15 C 0.09 2.42 11.18 84.68 0.95 3.37 16 16 N -0.51 -15.26 10.36 -195.84 -2.03 -17.28 16 17 C 0.09 2.62 11.18 84.68 0.95 3.57 16 18 C -0.18 -5.70 9.82 22.36 0.22 -5.48 16 19 C -0.04 -2.04 4.79 -19.87 -0.10 -2.13 16 20 C -0.07 -3.25 7.66 22.27 0.17 -3.08 16 21 C -0.16 -6.23 10.05 22.27 0.22 -6.01 16 22 C -0.15 -5.27 10.05 22.27 0.22 -5.05 16 23 C -0.14 -5.07 10.05 22.27 0.22 -4.85 16 24 C -0.15 -6.22 9.70 22.27 0.22 -6.00 16 25 H 0.27 12.97 8.31 -92.71 -0.77 12.19 16 26 H 0.36 17.14 5.52 -89.70 -0.49 16.65 16 27 H 0.02 0.97 7.96 -2.39 -0.02 0.95 16 28 H 0.07 2.61 8.01 -2.39 -0.02 2.59 16 29 H 0.15 3.75 8.06 -2.91 -0.02 3.72 16 30 H 0.18 3.53 8.06 -2.91 -0.02 3.51 16 31 H 0.17 3.96 8.06 -2.91 -0.02 3.94 16 32 H 0.13 4.10 8.06 -2.91 -0.02 4.07 16 33 H 0.12 6.07 5.59 -2.91 -0.02 6.05 16 34 H 0.12 4.16 8.06 -2.91 -0.02 4.14 16 35 H 0.13 3.78 8.06 -2.91 -0.02 3.75 16 36 H 0.13 3.88 8.06 -2.91 -0.02 3.85 16 37 H 0.11 4.29 8.06 -2.91 -0.02 4.27 16 Total: -1.00 -55.93 311.56 2.46 -53.47 By element: Atomic # 1 Polarization: 38.47 SS G_CDS: 0.57 Total: 39.04 kcal Atomic # 6 Polarization: -45.93 SS G_CDS: 4.43 Total: -41.50 kcal Atomic # 7 Polarization: -89.63 SS G_CDS: -4.57 Total: -94.20 kcal Atomic # 14 Polarization: 41.16 SS G_CDS: 2.03 Total: 43.18 kcal Total: -55.93 2.46 -53.47 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055016070.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.599 kcal (2) G-P(sol) polarization free energy of solvation -55.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.471 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds