Wall clock time and date at job start Mon Mar 30 2020 06:42:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09002 * 109.47331 * 2 1 4 4 N 1.46906 * 109.46987 * 240.00115 * 2 1 3 5 5 C 1.50699 * 109.47368 * 120.00208 * 2 1 3 6 6 C 1.38295 * 119.92068 * 79.72690 * 5 2 1 7 7 C 1.38117 * 120.09236 * 179.76705 * 6 5 2 8 8 C 1.38883 * 119.93649 * 0.53140 * 7 6 5 9 9 N 1.39747 * 120.07636 * 179.74683 * 8 7 6 10 10 C 1.46903 * 111.00077 * 296.02254 * 9 8 7 11 11 C 1.46905 * 110.99986 * 59.97229 * 9 8 7 12 12 C 1.50709 * 109.46933 * 170.00064 * 11 9 8 13 13 H 1.08002 * 119.99773 * 359.97438 * 12 11 9 14 14 C 1.37877 * 119.99683 * 179.97438 * 12 11 9 15 15 N 1.31510 * 120.00115 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 119.99509 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.46959 * 90.00310 * 16 14 12 18 18 H 1.48499 * 109.46757 * 210.00157 * 16 14 12 19 19 H 1.48502 * 109.47145 * 329.99796 * 16 14 12 20 20 C 1.38990 * 119.84592 * 359.71696 * 8 7 6 21 21 Cl 1.73592 * 120.04654 * 179.97438 * 20 8 7 22 22 C 1.38211 * 119.90412 * 0.02562 * 20 8 7 23 23 H 1.09002 * 109.47018 * 299.99687 * 1 2 3 24 24 H 1.08999 * 109.47836 * 59.99714 * 1 2 3 25 25 H 1.09002 * 109.47331 * 179.97438 * 1 2 3 26 26 H 1.00896 * 111.00309 * 296.04346 * 4 2 1 27 27 H 1.00902 * 110.99923 * 60.00509 * 4 2 1 28 28 H 1.08001 * 119.95415 * 0.02562 * 6 5 2 29 29 H 1.07997 * 120.03034 * 180.22812 * 7 6 5 30 30 H 1.08998 * 109.47200 * 59.99599 * 10 9 8 31 31 H 1.08999 * 109.47085 * 180.02562 * 10 9 8 32 32 H 1.09005 * 109.46725 * 299.99817 * 10 9 8 33 33 H 1.08996 * 109.47231 * 289.99837 * 11 9 8 34 34 H 1.08995 * 109.47069 * 50.00315 * 11 9 8 35 35 H 0.97001 * 119.99605 * 179.97438 * 15 14 12 36 36 H 1.07997 * 119.96769 * 179.97438 * 22 20 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6925 -1.1995 5 6 2.0323 -0.7104 1.2304 6 6 2.0608 -2.0926 1.2656 7 6 2.5250 -2.7474 2.3896 8 6 2.9535 -2.0164 3.4901 9 7 3.4188 -2.6759 4.6309 10 6 2.3512 -3.4719 5.2511 11 6 4.5844 -3.5129 4.3164 12 6 5.2055 -4.0105 5.5963 13 1 4.7774 -3.7323 6.5480 14 6 6.3202 -4.8207 5.5521 15 7 6.8411 -5.1598 4.3932 16 14 7.0904 -5.4368 7.1386 17 1 6.4706 -6.7314 7.5195 18 1 8.5497 -5.6262 6.9393 19 1 6.8632 -4.4424 8.2179 20 6 2.9189 -0.6274 3.4539 21 17 3.4526 0.2914 4.8266 22 6 2.4581 0.0212 2.3237 23 1 -0.3633 0.5138 0.8900 24 1 -0.3635 0.5138 -0.8899 25 1 -0.3634 -1.0277 -0.0005 26 1 1.7502 -1.6648 -1.1910 27 1 1.6961 -0.2349 -2.0386 28 1 1.7234 -2.6609 0.4114 29 1 2.5502 -3.8268 2.4146 30 1 1.9921 -4.2154 4.5395 31 1 2.7402 -3.9741 6.1368 32 1 1.5288 -2.8162 5.5375 33 1 4.2688 -4.3628 3.7114 34 1 5.3157 -2.9242 3.7626 35 1 7.6256 -5.7295 4.3622 36 1 2.4305 1.1004 2.2946 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000061694378.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:20 Heat of formation + Delta-G solvation = 20.917818 kcal Electronic energy + Delta-G solvation = -18138.223572 eV Core-core repulsion = 15261.877116 eV Total energy + Delta-G solvation = -2876.346456 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.104 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.71657 -37.18175 -35.93676 -34.70410 -32.51615 -30.54751 -29.53068 -28.39140 -27.17742 -25.12910 -23.07575 -22.71859 -21.07269 -19.85718 -17.20141 -16.31886 -16.07139 -15.25727 -14.93171 -14.69548 -14.40301 -13.86441 -13.63600 -13.50996 -13.40227 -13.05145 -12.63546 -12.40920 -12.03412 -11.86125 -11.40828 -11.25644 -11.00643 -10.94580 -10.88549 -10.72797 -10.53004 -10.22076 -9.98204 -9.28489 -8.93188 -8.50761 -8.45717 -8.04876 -7.46454 -6.03246 -4.04873 1.49437 1.52930 2.70656 3.32236 3.38711 3.43524 3.84841 4.40867 4.46045 4.62624 4.77908 4.96006 5.05051 5.21579 5.30716 5.32569 5.48246 5.57617 5.71461 5.83819 5.90404 6.06918 6.13113 6.19437 6.37390 6.59422 6.65826 6.73674 6.96936 6.98328 7.24905 7.26327 7.31730 7.81208 8.02536 8.12716 8.54913 9.01621 9.59026 11.07612 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.025785 B = 0.005017 C = 0.004588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.643472 B = 5579.361236 C = 6101.604836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.132 3.868 3 H 0.088 0.912 4 N -0.841 5.841 5 C -0.083 4.083 6 C -0.098 4.098 7 C -0.136 4.136 8 C 0.123 3.877 9 N -0.506 5.506 10 C 0.044 3.956 11 C 0.201 3.799 12 C -0.508 4.508 13 H 0.065 0.935 14 C 0.057 3.943 15 N -0.897 5.897 16 Si 0.898 3.102 17 H -0.281 1.281 18 H -0.287 1.287 19 H -0.272 1.272 20 C -0.016 4.016 21 Cl -0.058 7.058 22 C -0.106 4.106 23 H 0.064 0.936 24 H 0.056 0.944 25 H 0.056 0.944 26 H 0.341 0.659 27 H 0.341 0.659 28 H 0.117 0.883 29 H 0.128 0.872 30 H 0.017 0.983 31 H 0.082 0.918 32 H 0.047 0.953 33 H -0.004 1.004 34 H 0.031 0.969 35 H 0.262 0.738 36 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.098 9.052 -8.190 17.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.021 3.979 3 H 0.106 0.894 4 N -0.371 5.371 5 C -0.084 4.084 6 C -0.118 4.118 7 C -0.157 4.157 8 C 0.027 3.973 9 N -0.228 5.228 10 C -0.103 4.103 11 C 0.078 3.922 12 C -0.546 4.546 13 H 0.084 0.916 14 C -0.145 4.145 15 N -0.537 5.537 16 Si 0.726 3.274 17 H -0.207 1.207 18 H -0.212 1.212 19 H -0.197 1.197 20 C -0.044 4.044 21 Cl -0.029 7.029 22 C -0.126 4.126 23 H 0.083 0.917 24 H 0.075 0.925 25 H 0.075 0.925 26 H 0.155 0.845 27 H 0.153 0.847 28 H 0.135 0.865 29 H 0.146 0.854 30 H 0.035 0.965 31 H 0.101 0.899 32 H 0.066 0.934 33 H 0.014 0.986 34 H 0.050 0.950 35 H 0.071 0.929 36 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -11.995 9.551 -7.512 17.074 hybrid contribution -0.622 -1.165 0.075 1.322 sum -12.617 8.386 -7.437 16.876 Atomic orbital electron populations 1.22633 0.96937 1.02321 1.02304 1.20248 0.91938 0.97728 0.87979 0.89378 1.58911 1.67600 1.06897 1.03702 1.19456 1.00950 0.93494 0.94489 1.20722 0.99941 0.93595 0.97515 1.21741 0.99558 1.00718 0.93637 1.18955 0.95005 0.91630 0.91713 1.59903 1.07629 1.32875 1.22406 1.22242 0.92885 0.95317 0.99822 1.19805 0.85593 0.89744 0.97066 1.21116 1.11772 1.29045 0.92688 0.91643 1.24972 0.96814 0.96311 0.96375 1.69961 1.22908 1.36689 1.24110 0.86488 0.78354 0.79039 0.83506 1.20741 1.21240 1.19698 1.20892 1.02417 0.91091 0.90038 1.98343 1.88732 1.72676 1.43165 1.20692 1.00366 0.99745 0.91779 0.91707 0.92532 0.92459 0.84511 0.84665 0.86507 0.85429 0.96498 0.89937 0.93427 0.98601 0.95049 0.92871 0.85421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.53 9.46 37.15 0.35 -1.18 16 2 C 0.13 1.35 3.60 -68.86 -0.25 1.10 16 3 H 0.09 0.87 8.00 -51.93 -0.42 0.46 16 4 N -0.84 -8.11 9.12 -5.65 -0.05 -8.16 16 5 C -0.08 -1.12 4.96 -104.59 -0.52 -1.64 16 6 C -0.10 -1.41 9.26 -39.60 -0.37 -1.78 16 7 C -0.14 -2.38 8.66 -39.39 -0.34 -2.72 16 8 C 0.12 2.39 4.68 -83.73 -0.39 2.00 16 9 N -0.51 -11.16 4.12 -180.28 -0.74 -11.90 16 10 C 0.04 0.86 9.20 60.07 0.55 1.41 16 11 C 0.20 5.27 4.30 -4.97 -0.02 5.25 16 12 C -0.51 -14.24 8.46 -34.44 -0.29 -14.53 16 13 H 0.07 1.81 7.12 -52.49 -0.37 1.44 16 14 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 15 N -0.90 -26.73 13.29 55.43 0.74 -25.99 16 16 Si 0.90 21.70 29.54 -169.99 -5.02 16.68 16 17 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 18 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 19 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 20 C -0.02 -0.29 6.34 -39.31 -0.25 -0.54 16 21 Cl -0.06 -1.03 28.44 -51.86 -1.47 -2.51 16 22 C -0.11 -1.56 9.44 -39.58 -0.37 -1.94 16 23 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 24 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 26 H 0.34 3.07 7.20 -39.29 -0.28 2.79 16 27 H 0.34 2.48 9.04 -39.29 -0.36 2.13 16 28 H 0.12 1.38 6.60 -52.49 -0.35 1.03 16 29 H 0.13 2.26 7.14 -52.49 -0.37 1.88 16 30 H 0.02 0.31 7.34 -51.93 -0.38 -0.07 16 31 H 0.08 1.69 6.76 -51.93 -0.35 1.34 16 32 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.00 -0.10 7.48 -51.93 -0.39 -0.49 16 34 H 0.03 0.91 8.06 -51.93 -0.42 0.49 16 35 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 36 H 0.13 1.58 8.03 -52.49 -0.42 1.16 16 LS Contribution 313.29 15.07 4.72 4.72 Total: -1.00 -30.53 313.29 -8.76 -39.29 By element: Atomic # 1 Polarization: 5.85 SS G_CDS: -4.93 Total: 0.92 kcal Atomic # 6 Polarization: -11.04 SS G_CDS: -2.00 Total: -13.04 kcal Atomic # 7 Polarization: -45.99 SS G_CDS: -0.06 Total: -46.05 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Atomic # 17 Polarization: -1.03 SS G_CDS: -1.47 Total: -2.51 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -30.53 -8.76 -39.29 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061694378.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.206 kcal (2) G-P(sol) polarization free energy of solvation -30.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.288 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds