Wall clock time and date at job start Mon Mar 30 2020 06:42:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09002 * 109.47331 * 2 1 4 4 N 1.46906 * 109.46987 * 240.00115 * 2 1 3 5 5 C 1.50699 * 109.47368 * 120.00208 * 2 1 3 6 6 C 1.38295 * 119.92068 * 79.72690 * 5 2 1 7 7 C 1.38117 * 120.09236 * 179.76705 * 6 5 2 8 8 C 1.38883 * 119.93649 * 0.53140 * 7 6 5 9 9 N 1.39747 * 120.07636 * 179.74683 * 8 7 6 10 10 C 1.46903 * 111.00077 * 296.02254 * 9 8 7 11 11 C 1.46905 * 110.99986 * 59.97229 * 9 8 7 12 12 C 1.50709 * 109.46933 * 170.00064 * 11 9 8 13 13 H 1.08002 * 119.99773 * 359.97438 * 12 11 9 14 14 C 1.37877 * 119.99683 * 179.97438 * 12 11 9 15 15 N 1.31510 * 120.00115 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 119.99509 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.46959 * 90.00310 * 16 14 12 18 18 H 1.48499 * 109.46757 * 210.00157 * 16 14 12 19 19 H 1.48502 * 109.47145 * 329.99796 * 16 14 12 20 20 C 1.38990 * 119.84592 * 359.71696 * 8 7 6 21 21 Cl 1.73592 * 120.04654 * 179.97438 * 20 8 7 22 22 C 1.38211 * 119.90412 * 0.02562 * 20 8 7 23 23 H 1.09002 * 109.47018 * 299.99687 * 1 2 3 24 24 H 1.08999 * 109.47836 * 59.99714 * 1 2 3 25 25 H 1.09002 * 109.47331 * 179.97438 * 1 2 3 26 26 H 1.00896 * 111.00309 * 296.04346 * 4 2 1 27 27 H 1.00902 * 110.99923 * 60.00509 * 4 2 1 28 28 H 1.08001 * 119.95415 * 0.02562 * 6 5 2 29 29 H 1.07997 * 120.03034 * 180.22812 * 7 6 5 30 30 H 1.08998 * 109.47200 * 59.99599 * 10 9 8 31 31 H 1.08999 * 109.47085 * 180.02562 * 10 9 8 32 32 H 1.09005 * 109.46725 * 299.99817 * 10 9 8 33 33 H 1.08996 * 109.47231 * 289.99837 * 11 9 8 34 34 H 1.08995 * 109.47069 * 50.00315 * 11 9 8 35 35 H 0.97001 * 119.99605 * 179.97438 * 15 14 12 36 36 H 1.07997 * 119.96769 * 179.97438 * 22 20 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6925 -1.1995 5 6 2.0323 -0.7104 1.2304 6 6 2.0608 -2.0926 1.2656 7 6 2.5250 -2.7474 2.3896 8 6 2.9535 -2.0164 3.4901 9 7 3.4188 -2.6759 4.6309 10 6 2.3512 -3.4719 5.2511 11 6 4.5844 -3.5129 4.3164 12 6 5.2055 -4.0105 5.5963 13 1 4.7774 -3.7323 6.5480 14 6 6.3202 -4.8207 5.5521 15 7 6.8411 -5.1598 4.3932 16 14 7.0904 -5.4368 7.1386 17 1 6.4706 -6.7314 7.5195 18 1 8.5497 -5.6262 6.9393 19 1 6.8632 -4.4424 8.2179 20 6 2.9189 -0.6274 3.4539 21 17 3.4526 0.2914 4.8266 22 6 2.4581 0.0212 2.3237 23 1 -0.3633 0.5138 0.8900 24 1 -0.3635 0.5138 -0.8899 25 1 -0.3634 -1.0277 -0.0005 26 1 1.7502 -1.6648 -1.1910 27 1 1.6961 -0.2349 -2.0386 28 1 1.7234 -2.6609 0.4114 29 1 2.5502 -3.8268 2.4146 30 1 1.9921 -4.2154 4.5395 31 1 2.7402 -3.9741 6.1368 32 1 1.5288 -2.8162 5.5375 33 1 4.2688 -4.3628 3.7114 34 1 5.3157 -2.9242 3.7626 35 1 7.6256 -5.7295 4.3622 36 1 2.4305 1.1004 2.2946 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000061694378.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:20 Heat of formation + Delta-G solvation = 1.028786 kcal Electronic energy + Delta-G solvation = -18139.086025 eV Core-core repulsion = 15261.877116 eV Total energy + Delta-G solvation = -2877.208909 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.104 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.01661 -38.48575 -37.33204 -35.93108 -34.57784 -31.79959 -30.77496 -29.44284 -28.95451 -26.74180 -24.66349 -23.94060 -22.51654 -21.12457 -18.74070 -17.97229 -17.39305 -16.72873 -16.48344 -16.14885 -15.58772 -15.30029 -14.89611 -14.79908 -14.40825 -14.32465 -14.02621 -13.76154 -13.63682 -13.19980 -12.84104 -12.78591 -12.62557 -12.41139 -12.37445 -12.17075 -12.03513 -11.94435 -11.57716 -11.32652 -10.63548 -9.85816 -9.64429 -9.32297 -9.21372 -8.21255 -6.31634 0.20395 0.26181 1.35500 1.40877 1.42741 1.54419 2.39651 2.59898 3.10858 3.16765 3.62243 3.81887 3.88175 4.09436 4.27885 4.32491 4.40548 4.44025 4.60083 4.67101 4.79865 4.80161 4.98014 5.00711 5.07034 5.17971 5.21166 5.25705 5.42603 5.49309 5.65266 5.79929 6.05583 6.16956 6.26252 6.64597 6.73019 6.82549 7.37750 8.89968 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.025785 B = 0.005017 C = 0.004588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.643472 B = 5579.361236 C = 6101.604836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.136 3.864 3 H 0.097 0.903 4 N -0.852 5.852 5 C -0.071 4.071 6 C -0.092 4.092 7 C -0.149 4.149 8 C 0.084 3.916 9 N -0.511 5.511 10 C 0.048 3.952 11 C 0.223 3.777 12 C -0.523 4.523 13 H 0.065 0.935 14 C 0.004 3.996 15 N -0.934 5.934 16 Si 0.970 3.030 17 H -0.270 1.270 18 H -0.283 1.283 19 H -0.266 1.266 20 C -0.030 4.030 21 Cl -0.066 7.066 22 C -0.103 4.103 23 H 0.062 0.938 24 H 0.077 0.923 25 H 0.055 0.945 26 H 0.344 0.656 27 H 0.356 0.644 28 H 0.145 0.855 29 H 0.115 0.885 30 H 0.021 0.979 31 H 0.068 0.932 32 H 0.070 0.930 33 H -0.027 1.027 34 H -0.007 1.007 35 H 0.265 0.735 36 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.293 10.012 -8.912 19.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.025 3.975 3 H 0.115 0.885 4 N -0.384 5.384 5 C -0.071 4.071 6 C -0.111 4.111 7 C -0.169 4.169 8 C -0.012 4.012 9 N -0.233 5.233 10 C -0.098 4.098 11 C 0.099 3.901 12 C -0.562 4.562 13 H 0.083 0.917 14 C -0.194 4.194 15 N -0.574 5.574 16 Si 0.794 3.206 17 H -0.195 1.195 18 H -0.208 1.208 19 H -0.190 1.190 20 C -0.058 4.058 21 Cl -0.037 7.037 22 C -0.122 4.122 23 H 0.081 0.919 24 H 0.096 0.904 25 H 0.074 0.926 26 H 0.159 0.841 27 H 0.171 0.829 28 H 0.163 0.837 29 H 0.133 0.867 30 H 0.039 0.961 31 H 0.087 0.913 32 H 0.089 0.911 33 H -0.010 1.010 34 H 0.011 0.989 35 H 0.074 0.926 36 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -13.222 10.527 -8.245 18.805 hybrid contribution -0.325 -1.395 0.166 1.442 sum -13.546 9.132 -8.079 18.225 Atomic orbital electron populations 1.22570 0.95127 1.02599 1.03295 1.20265 0.93170 0.97569 0.86535 0.88462 1.58881 1.68033 1.07338 1.04185 1.19918 0.98670 0.93222 0.95337 1.21005 0.98636 0.94377 0.97114 1.21706 1.00576 1.00198 0.94430 1.19072 0.97806 0.92442 0.91834 1.59711 1.07397 1.32082 1.24085 1.22221 0.92792 0.95726 0.99111 1.19325 0.86540 0.88715 0.95533 1.21423 1.12236 1.29284 0.93225 0.91687 1.25888 0.97239 0.96332 0.99914 1.70091 1.23447 1.37374 1.26474 0.85379 0.77338 0.78785 0.79106 1.19512 1.20809 1.19033 1.21058 1.03336 0.90515 0.90881 1.98331 1.88960 1.72589 1.43836 1.21023 0.99147 1.01166 0.90854 0.91874 0.90445 0.92564 0.84142 0.82914 0.83696 0.86689 0.96060 0.91337 0.91084 1.00979 0.98902 0.92642 0.82793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.31 9.46 71.98 0.68 -1.63 16 2 C 0.14 2.31 3.60 44.17 0.16 2.47 16 3 H 0.10 1.54 8.00 -2.39 -0.02 1.53 16 4 N -0.85 -13.72 9.12 -171.80 -1.57 -15.29 16 5 C -0.07 -1.74 4.96 -19.84 -0.10 -1.84 16 6 C -0.09 -2.52 9.26 22.25 0.21 -2.31 16 7 C -0.15 -5.26 8.66 22.40 0.19 -5.07 16 8 C 0.08 3.33 4.68 38.21 0.18 3.51 16 9 N -0.51 -23.28 4.12 -724.28 -2.98 -26.26 16 10 C 0.05 1.91 9.20 127.69 1.17 3.09 16 11 C 0.22 12.29 4.30 85.56 0.37 12.66 16 12 C -0.52 -30.20 8.46 25.60 0.22 -29.98 16 13 H 0.06 3.68 7.12 -2.91 -0.02 3.65 16 14 C 0.00 0.26 5.46 84.66 0.46 0.72 16 15 N -0.93 -56.98 13.29 21.45 0.28 -56.69 16 16 Si 0.97 44.87 29.54 68.60 2.03 46.90 16 17 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 18 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 19 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 20 C -0.03 -1.07 6.34 22.44 0.14 -0.92 16 21 Cl -0.07 -2.35 28.44 -2.72 -0.08 -2.43 16 22 C -0.10 -2.84 9.44 22.27 0.21 -2.63 16 23 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 24 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 25 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 26 H 0.34 5.15 7.20 -89.70 -0.65 4.50 16 27 H 0.36 3.96 9.04 -89.69 -0.81 3.15 16 28 H 0.15 3.08 6.60 -2.91 -0.02 3.06 16 29 H 0.12 4.26 7.14 -2.91 -0.02 4.24 16 30 H 0.02 0.80 7.34 -2.39 -0.02 0.79 16 31 H 0.07 2.87 6.76 -2.39 -0.02 2.85 16 32 H 0.07 2.45 8.14 -2.38 -0.02 2.43 16 33 H -0.03 -1.60 7.48 -2.39 -0.02 -1.62 16 34 H -0.01 -0.44 8.06 -2.39 -0.02 -0.46 16 35 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 36 H 0.15 3.39 8.03 -2.91 -0.02 3.37 16 Total: -1.00 -67.30 313.29 1.22 -66.08 By element: Atomic # 1 Polarization: 9.98 SS G_CDS: -0.36 Total: 9.63 kcal Atomic # 6 Polarization: -25.83 SS G_CDS: 3.89 Total: -21.94 kcal Atomic # 7 Polarization: -93.97 SS G_CDS: -4.27 Total: -98.24 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.90 kcal Atomic # 17 Polarization: -2.35 SS G_CDS: -0.08 Total: -2.43 kcal Total: -67.30 1.22 -66.08 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061694378.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.107 kcal (2) G-P(sol) polarization free energy of solvation -67.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.078 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds