Wall clock time and date at job start Mon Mar 30 2020 07:41:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38769 * 120.07813 * 2 1 4 4 N 1.39665 * 120.03582 * 359.94917 * 3 2 1 5 5 C 1.38970 * 119.92970 * 179.97438 * 3 2 1 6 6 C 1.38190 * 120.08417 * 359.97438 * 5 3 2 7 7 C 1.38106 * 120.15432 * 359.72290 * 6 5 3 8 8 C 1.38819 * 120.07483 * 179.97438 * 2 1 3 9 9 N 1.39596 * 120.04172 * 0.02734 * 8 2 1 10 10 C 1.38813 * 119.99560 * 79.95080 * 9 8 2 11 11 C 1.39600 * 119.84981 * 1.07680 * 10 9 8 12 12 C 1.36311 * 120.15799 * 179.72075 * 11 10 9 13 13 C 1.40897 * 119.84059 * 0.55123 * 12 11 10 14 14 C 1.41102 * 120.15547 * 179.70245 * 13 12 11 15 15 H 1.07998 * 120.00353 * 24.63378 * 14 13 12 16 16 C 1.39854 * 120.00248 * 204.63559 * 14 13 12 17 17 N 1.30908 * 119.99765 * 18.97502 * 16 14 13 18 18 Si 1.86801 * 120.00149 * 198.97295 * 16 14 13 19 19 H 1.48493 * 109.47017 * 60.00089 * 18 16 14 20 20 H 1.48503 * 109.46814 * 180.02562 * 18 16 14 21 21 H 1.48496 * 109.47198 * 299.99878 * 18 16 14 22 22 C 1.40903 * 119.69264 * 359.72395 * 13 12 11 23 23 C 1.36313 * 119.84008 * 359.97438 * 22 13 12 24 24 H 1.08995 * 109.47505 * 270.03054 * 1 2 3 25 25 H 1.09006 * 109.46825 * 30.02934 * 1 2 3 26 26 H 1.08998 * 109.47180 * 150.02186 * 1 2 3 27 27 H 0.97009 * 120.00123 * 0.02562 * 4 3 2 28 28 H 0.97003 * 120.00480 * 179.97438 * 4 3 2 29 29 H 1.08005 * 119.95663 * 180.02562 * 5 3 2 30 30 H 1.08007 * 119.91966 * 180.02562 * 6 5 3 31 31 H 1.08002 * 119.96768 * 180.27828 * 7 6 5 32 32 H 0.96998 * 119.99959 * 259.67821 * 9 8 2 33 33 H 1.08001 * 119.92014 * 359.97438 * 11 10 9 34 34 H 1.08002 * 120.08206 * 180.29919 * 12 11 10 35 35 H 0.96998 * 120.00379 * 179.97438 * 17 16 14 36 36 H 1.08007 * 120.07907 * 179.97438 * 22 13 12 37 37 H 1.07996 * 119.92036 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2025 1.2008 0.0000 4 7 1.5065 2.4117 -0.0011 5 6 3.5922 1.1972 0.0005 6 6 4.2818 -0.0003 0.0016 7 6 3.5931 -1.1974 0.0079 8 6 2.2026 -1.2013 0.0005 9 7 1.5071 -2.4117 0.0005 10 6 0.9800 -2.9091 -1.1834 11 6 1.1666 -2.2077 -2.3759 12 6 0.6565 -2.6933 -3.5430 13 6 -0.0704 -3.9002 -3.5419 14 6 -0.6067 -4.4058 -4.7452 15 1 -0.1629 -4.1324 -5.6911 16 6 -1.7130 -5.2607 -4.7130 17 7 -2.4753 -5.3049 -3.6497 18 14 -2.1029 -6.3396 -6.1873 19 1 -0.9571 -7.2455 -6.4545 20 1 -3.3167 -7.1465 -5.9029 21 1 -2.3453 -5.4840 -7.3765 22 6 -0.2598 -4.5999 -2.3336 23 6 0.2611 -4.1058 -1.1749 24 1 -0.3634 0.0005 1.0276 25 1 -0.3633 0.8898 -0.5143 26 1 -0.3633 -0.8902 -0.5135 27 1 0.5365 2.4137 -0.0014 28 1 1.9932 3.2509 -0.0007 29 1 4.1339 2.1316 0.0010 30 1 5.3618 0.0000 0.0024 31 1 4.1351 -2.1316 0.0133 32 1 1.3956 -2.9070 0.8270 33 1 1.7199 -1.2802 -2.3744 34 1 0.8058 -2.1521 -4.4656 35 1 -3.2429 -5.8976 -3.6275 36 1 -0.8164 -5.5255 -2.3256 37 1 0.1164 -4.6408 -0.2480 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000062725391.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:41:00 Heat of formation + Delta-G solvation = 48.044401 kcal Electronic energy + Delta-G solvation = -19433.643362 eV Core-core repulsion = 16560.906052 eV Total energy + Delta-G solvation = -2872.737309 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.127 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.69433 -37.69870 -35.40453 -34.00002 -32.95664 -31.17084 -29.49328 -28.89997 -27.68547 -26.32220 -24.38244 -22.02699 -20.94918 -20.75285 -20.07530 -17.23491 -16.99404 -16.91947 -16.08635 -15.31355 -15.10928 -14.51559 -14.21397 -13.85491 -13.52851 -13.08584 -12.73032 -12.58966 -12.16849 -12.03088 -11.96702 -11.79847 -11.46259 -11.10044 -11.04736 -10.96148 -10.78925 -10.50357 -10.33385 -9.69547 -9.32210 -9.28469 -8.68613 -8.19625 -7.47656 -7.30272 -6.66943 -6.43527 -4.04363 1.64791 1.87536 2.92429 3.12565 3.14489 3.17796 3.35854 3.92855 4.05133 4.08277 4.40899 4.75863 5.16385 5.25012 5.44442 5.73915 5.82444 5.87453 5.95214 5.99856 6.02176 6.30397 6.37460 6.52279 6.61881 6.77288 6.83865 7.00356 7.04185 7.11675 7.21355 7.34835 7.57874 7.65762 7.70444 7.82670 7.86275 8.15172 8.35235 8.55382 8.70211 8.78263 9.05578 9.14809 10.35769 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.034232 B = 0.004224 C = 0.004159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.754286 B = 6626.847047 C = 6730.419344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.165 4.165 3 C 0.216 3.784 4 N -0.881 5.881 5 C -0.209 4.209 6 C -0.074 4.074 7 C -0.183 4.183 8 C 0.222 3.778 9 N -0.717 5.717 10 C 0.085 3.915 11 C -0.142 4.142 12 C -0.192 4.192 13 C 0.081 3.919 14 C -0.467 4.467 15 H 0.073 0.927 16 C 0.077 3.923 17 N -0.805 5.805 18 Si 0.902 3.098 19 H -0.266 1.266 20 H -0.281 1.281 21 H -0.268 1.268 22 C -0.129 4.129 23 C -0.156 4.156 24 H 0.056 0.944 25 H 0.050 0.950 26 H 0.083 0.917 27 H 0.397 0.603 28 H 0.393 0.607 29 H 0.114 0.886 30 H 0.117 0.883 31 H 0.117 0.883 32 H 0.394 0.606 33 H 0.088 0.912 34 H 0.090 0.910 35 H 0.277 0.723 36 H 0.118 0.882 37 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.454 9.552 7.821 13.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.172 4.172 3 C 0.112 3.888 4 N -0.422 5.422 5 C -0.232 4.232 6 C -0.094 4.094 7 C -0.205 4.205 8 C 0.127 3.873 9 N -0.350 5.350 10 C -0.010 4.010 11 C -0.164 4.164 12 C -0.212 4.212 13 C 0.078 3.922 14 C -0.498 4.498 15 H 0.091 0.909 16 C -0.139 4.139 17 N -0.432 5.432 18 Si 0.727 3.273 19 H -0.190 1.190 20 H -0.206 1.206 21 H -0.193 1.193 22 C -0.149 4.149 23 C -0.177 4.177 24 H 0.075 0.925 25 H 0.069 0.931 26 H 0.102 0.898 27 H 0.226 0.774 28 H 0.221 0.779 29 H 0.132 0.868 30 H 0.135 0.865 31 H 0.135 0.865 32 H 0.229 0.771 33 H 0.106 0.894 34 H 0.108 0.892 35 H 0.088 0.912 36 H 0.136 0.864 37 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 6.276 9.503 7.802 13.804 hybrid contribution -0.464 -0.272 -0.392 0.666 sum 5.812 9.231 7.410 13.187 Atomic orbital electron populations 1.20527 0.91234 1.03064 1.01118 1.19805 0.96230 0.91373 1.09749 1.17464 0.91024 0.85892 0.94404 1.42502 1.08988 1.04852 1.85830 1.20453 0.91859 0.98257 1.12614 1.20658 0.99007 0.91741 0.97978 1.21309 0.93880 0.97969 1.07310 1.17049 0.89595 0.85538 0.95068 1.41223 1.63603 1.21777 1.08409 1.17240 1.02629 0.96166 0.84970 1.19899 1.04866 0.99533 0.92116 1.20555 1.07112 0.97674 0.95845 1.17498 0.91312 0.90156 0.93264 1.19345 1.11549 1.25033 0.93898 0.90933 1.25793 0.95087 0.96065 0.96970 1.69854 1.12162 1.31914 1.29247 0.86474 0.78227 0.80438 0.82133 1.19036 1.20568 1.19256 1.20860 1.01764 1.00470 0.91760 1.20022 1.03440 0.96417 0.97841 0.92538 0.93115 0.89786 0.77399 0.77912 0.86835 0.86516 0.86463 0.77063 0.89360 0.89174 0.91224 0.86446 0.89423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.58 9.33 36.00 0.34 -1.25 16 2 C -0.17 -2.62 5.47 -104.21 -0.57 -3.19 16 3 C 0.22 2.99 6.73 -83.82 -0.56 2.42 16 4 N -0.88 -9.24 8.99 32.39 0.29 -8.95 16 5 C -0.21 -2.70 9.89 -39.33 -0.39 -3.09 16 6 C -0.07 -0.99 10.03 -39.65 -0.40 -1.39 16 7 C -0.18 -2.82 9.97 -39.33 -0.39 -3.22 16 8 C 0.22 3.75 4.44 -83.81 -0.37 3.37 16 9 N -0.72 -12.92 4.71 -8.32 -0.04 -12.96 16 10 C 0.08 1.84 5.41 -83.68 -0.45 1.39 16 11 C -0.14 -3.30 8.82 -39.77 -0.35 -3.65 16 12 C -0.19 -4.84 9.74 -39.27 -0.38 -5.22 16 13 C 0.08 2.18 5.57 -106.80 -0.59 1.59 16 14 C -0.47 -12.73 9.02 -37.89 -0.34 -13.07 16 15 H 0.07 1.91 7.91 -52.49 -0.42 1.50 16 16 C 0.08 1.97 5.11 -17.34 -0.09 1.88 16 17 N -0.80 -21.27 11.02 55.54 0.61 -20.66 16 18 Si 0.90 19.22 29.60 -169.99 -5.03 14.19 16 19 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 20 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 21 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 22 C -0.13 -3.35 8.64 -39.27 -0.34 -3.69 16 23 C -0.16 -3.60 9.82 -39.76 -0.39 -3.99 16 24 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 25 H 0.05 0.69 6.55 -51.93 -0.34 0.35 16 26 H 0.08 1.57 6.06 -51.93 -0.31 1.26 16 27 H 0.40 3.86 6.82 -40.82 -0.28 3.58 16 28 H 0.39 3.15 8.84 -40.82 -0.36 2.79 16 29 H 0.11 1.19 8.06 -52.48 -0.42 0.76 16 30 H 0.12 1.25 8.06 -52.48 -0.42 0.83 16 31 H 0.12 1.75 8.06 -52.49 -0.42 1.33 16 32 H 0.39 6.35 8.82 -40.82 -0.36 5.99 16 33 H 0.09 1.97 6.69 -52.49 -0.35 1.62 16 34 H 0.09 2.18 8.06 -52.49 -0.42 1.76 16 35 H 0.28 6.72 8.30 -40.82 -0.34 6.38 16 36 H 0.12 3.17 6.20 -52.48 -0.33 2.84 16 37 H 0.09 1.81 8.06 -52.49 -0.42 1.39 16 LS Contribution 308.25 15.07 4.65 4.65 Total: -1.00 -28.72 308.25 -9.23 -37.95 By element: Atomic # 1 Polarization: 21.29 SS G_CDS: -4.42 Total: 16.87 kcal Atomic # 6 Polarization: -25.80 SS G_CDS: -5.29 Total: -31.09 kcal Atomic # 7 Polarization: -43.43 SS G_CDS: 0.86 Total: -42.56 kcal Atomic # 14 Polarization: 19.22 SS G_CDS: -5.03 Total: 14.19 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -28.72 -9.23 -37.95 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062725391.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.998 kcal (2) G-P(sol) polarization free energy of solvation -28.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.953 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds