Wall clock time and date at job start Mon Mar 30 2020 07:40:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38769 * 120.07813 * 2 1 4 4 N 1.39665 * 120.03582 * 359.94917 * 3 2 1 5 5 C 1.38970 * 119.92970 * 179.97438 * 3 2 1 6 6 C 1.38190 * 120.08417 * 359.97438 * 5 3 2 7 7 C 1.38106 * 120.15432 * 359.72290 * 6 5 3 8 8 C 1.38819 * 120.07483 * 179.97438 * 2 1 3 9 9 N 1.39596 * 120.04172 * 0.02734 * 8 2 1 10 10 C 1.38813 * 119.99560 * 79.95080 * 9 8 2 11 11 C 1.39600 * 119.84981 * 1.07680 * 10 9 8 12 12 C 1.36311 * 120.15799 * 179.72075 * 11 10 9 13 13 C 1.40897 * 119.84059 * 0.55123 * 12 11 10 14 14 C 1.41102 * 120.15547 * 179.70245 * 13 12 11 15 15 H 1.07998 * 120.00353 * 24.63378 * 14 13 12 16 16 C 1.39854 * 120.00248 * 204.63559 * 14 13 12 17 17 N 1.30908 * 119.99765 * 18.97502 * 16 14 13 18 18 Si 1.86801 * 120.00149 * 198.97295 * 16 14 13 19 19 H 1.48493 * 109.47017 * 60.00089 * 18 16 14 20 20 H 1.48503 * 109.46814 * 180.02562 * 18 16 14 21 21 H 1.48496 * 109.47198 * 299.99878 * 18 16 14 22 22 C 1.40903 * 119.69264 * 359.72395 * 13 12 11 23 23 C 1.36313 * 119.84008 * 359.97438 * 22 13 12 24 24 H 1.08995 * 109.47505 * 270.03054 * 1 2 3 25 25 H 1.09006 * 109.46825 * 30.02934 * 1 2 3 26 26 H 1.08998 * 109.47180 * 150.02186 * 1 2 3 27 27 H 0.97009 * 120.00123 * 0.02562 * 4 3 2 28 28 H 0.97003 * 120.00480 * 179.97438 * 4 3 2 29 29 H 1.08005 * 119.95663 * 180.02562 * 5 3 2 30 30 H 1.08007 * 119.91966 * 180.02562 * 6 5 3 31 31 H 1.08002 * 119.96768 * 180.27828 * 7 6 5 32 32 H 0.96998 * 119.99959 * 259.67821 * 9 8 2 33 33 H 1.08001 * 119.92014 * 359.97438 * 11 10 9 34 34 H 1.08002 * 120.08206 * 180.29919 * 12 11 10 35 35 H 0.96998 * 120.00379 * 179.97438 * 17 16 14 36 36 H 1.08007 * 120.07907 * 179.97438 * 22 13 12 37 37 H 1.07996 * 119.92036 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2025 1.2008 0.0000 4 7 1.5065 2.4117 -0.0011 5 6 3.5922 1.1972 0.0005 6 6 4.2818 -0.0003 0.0016 7 6 3.5931 -1.1974 0.0079 8 6 2.2026 -1.2013 0.0005 9 7 1.5071 -2.4117 0.0005 10 6 0.9800 -2.9091 -1.1834 11 6 1.1666 -2.2077 -2.3759 12 6 0.6565 -2.6933 -3.5430 13 6 -0.0704 -3.9002 -3.5419 14 6 -0.6067 -4.4058 -4.7452 15 1 -0.1629 -4.1324 -5.6911 16 6 -1.7130 -5.2607 -4.7130 17 7 -2.4753 -5.3049 -3.6497 18 14 -2.1029 -6.3396 -6.1873 19 1 -0.9571 -7.2455 -6.4545 20 1 -3.3167 -7.1465 -5.9029 21 1 -2.3453 -5.4840 -7.3765 22 6 -0.2598 -4.5999 -2.3336 23 6 0.2611 -4.1058 -1.1749 24 1 -0.3634 0.0005 1.0276 25 1 -0.3633 0.8898 -0.5143 26 1 -0.3633 -0.8902 -0.5135 27 1 0.5365 2.4137 -0.0014 28 1 1.9932 3.2509 -0.0007 29 1 4.1339 2.1316 0.0010 30 1 5.3618 0.0000 0.0024 31 1 4.1351 -2.1316 0.0133 32 1 1.3956 -2.9070 0.8270 33 1 1.7199 -1.2802 -2.3744 34 1 0.8058 -2.1521 -4.4656 35 1 -3.2429 -5.8976 -3.6275 36 1 -0.8164 -5.5255 -2.3256 37 1 0.1164 -4.6408 -0.2480 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000062725391.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:40:59 Heat of formation + Delta-G solvation = 32.079766 kcal Electronic energy + Delta-G solvation = -19434.335640 eV Core-core repulsion = 16560.906052 eV Total energy + Delta-G solvation = -2873.429588 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.127 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.94999 -39.38768 -36.89386 -35.32232 -34.56598 -32.52817 -31.29349 -30.60522 -28.99564 -27.55241 -26.17080 -23.53565 -22.55742 -22.09955 -21.65635 -19.14378 -18.24115 -17.99877 -17.73851 -16.96680 -16.35795 -15.85430 -15.63007 -15.31963 -14.82487 -14.60574 -14.35999 -14.07017 -13.85653 -13.65940 -13.48945 -13.17699 -13.00958 -12.74994 -12.72944 -12.35709 -12.16047 -12.11060 -11.57176 -11.40806 -11.19482 -11.10452 -10.46412 -9.42317 -9.39359 -8.57532 -8.31924 -8.22886 -6.02513 0.50300 0.76072 1.10235 1.19268 1.40803 1.51430 1.60244 2.27581 2.77667 2.84814 2.99359 3.19329 3.84374 4.09494 4.19008 4.31111 4.44047 4.49182 4.68436 4.74548 4.78941 4.86208 4.89307 5.03737 5.18535 5.29069 5.38462 5.42544 5.44312 5.67999 5.72429 5.73493 5.87685 5.90473 6.05410 6.17469 6.41507 6.63086 6.70347 6.91610 7.05784 7.07519 7.18842 7.25996 8.46823 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.034232 B = 0.004224 C = 0.004159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.754286 B = 6626.847047 C = 6730.419344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.185 4.185 3 C 0.216 3.784 4 N -0.868 5.868 5 C -0.206 4.206 6 C -0.070 4.070 7 C -0.198 4.198 8 C 0.192 3.808 9 N -0.706 5.706 10 C 0.114 3.886 11 C -0.146 4.146 12 C -0.202 4.202 13 C 0.044 3.956 14 C -0.507 4.507 15 H 0.067 0.933 16 C 0.036 3.964 17 N -0.837 5.837 18 Si 0.975 3.025 19 H -0.263 1.263 20 H -0.269 1.269 21 H -0.263 1.263 22 C -0.144 4.144 23 C -0.165 4.165 24 H 0.067 0.933 25 H 0.065 0.935 26 H 0.046 0.954 27 H 0.401 0.599 28 H 0.408 0.592 29 H 0.145 0.855 30 H 0.146 0.854 31 H 0.116 0.884 32 H 0.403 0.597 33 H 0.098 0.902 34 H 0.091 0.909 35 H 0.284 0.716 36 H 0.101 0.899 37 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.610 11.134 8.557 15.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.192 4.192 3 C 0.110 3.890 4 N -0.410 5.410 5 C -0.228 4.228 6 C -0.089 4.089 7 C -0.220 4.220 8 C 0.098 3.902 9 N -0.338 5.338 10 C 0.017 3.983 11 C -0.168 4.168 12 C -0.222 4.222 13 C 0.041 3.959 14 C -0.538 4.538 15 H 0.085 0.915 16 C -0.177 4.177 17 N -0.465 5.465 18 Si 0.797 3.203 19 H -0.188 1.188 20 H -0.193 1.193 21 H -0.187 1.187 22 C -0.164 4.164 23 C -0.187 4.187 24 H 0.086 0.914 25 H 0.084 0.916 26 H 0.065 0.935 27 H 0.231 0.769 28 H 0.238 0.762 29 H 0.162 0.838 30 H 0.164 0.836 31 H 0.134 0.866 32 H 0.240 0.760 33 H 0.116 0.884 34 H 0.109 0.891 35 H 0.094 0.906 36 H 0.119 0.881 37 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 7.449 11.141 8.579 15.913 hybrid contribution -0.699 -0.549 -0.439 0.992 sum 6.750 10.591 8.140 14.967 Atomic orbital electron populations 1.20437 0.91472 1.01924 1.01526 1.19854 0.96249 0.92001 1.11069 1.17589 0.91675 0.86159 0.93599 1.42477 1.09358 1.04530 1.84610 1.20844 0.91601 0.99451 1.10940 1.21000 1.00532 0.91006 0.96368 1.21380 0.93307 0.99048 1.08282 1.17274 0.90286 0.85086 0.97516 1.41132 1.62849 1.22436 1.07430 1.17259 1.00172 0.94874 0.86027 1.19950 1.04997 0.99965 0.91923 1.20697 1.07301 0.97450 0.96788 1.17788 0.92842 0.91301 0.93924 1.19560 1.13014 1.27410 0.93843 0.91485 1.26588 0.94311 0.96717 1.00060 1.69910 1.12688 1.32666 1.31206 0.85364 0.78255 0.78397 0.78299 1.18764 1.19312 1.18703 1.20809 1.02639 1.00294 0.92669 1.20218 1.03382 0.97143 0.97930 0.91384 0.91622 0.93494 0.76886 0.76188 0.83766 0.83632 0.86603 0.76010 0.88373 0.89097 0.90611 0.88067 0.87078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.89 9.33 71.23 0.66 -2.22 16 2 C -0.19 -5.56 5.47 -19.60 -0.11 -5.67 16 3 C 0.22 5.32 6.73 38.20 0.26 5.57 16 4 N -0.87 -15.37 8.99 -51.43 -0.46 -15.83 16 5 C -0.21 -4.53 9.89 22.43 0.22 -4.31 16 6 C -0.07 -1.64 10.03 22.23 0.22 -1.42 16 7 C -0.20 -5.76 9.97 22.43 0.22 -5.54 16 8 C 0.19 6.23 4.44 38.24 0.17 6.40 16 9 N -0.71 -24.95 4.71 -180.25 -0.85 -25.80 16 10 C 0.11 4.96 5.41 38.70 0.21 5.17 16 11 C -0.15 -6.84 8.82 22.15 0.20 -6.64 16 12 C -0.20 -10.54 9.74 22.47 0.22 -10.32 16 13 C 0.04 2.50 5.57 -21.27 -0.12 2.38 16 14 C -0.51 -28.81 9.02 23.36 0.21 -28.59 16 15 H 0.07 3.71 7.91 -2.91 -0.02 3.68 16 16 C 0.04 1.90 5.11 85.22 0.44 2.33 16 17 N -0.84 -45.59 11.02 21.81 0.24 -45.35 16 18 Si 0.98 40.14 29.60 68.60 2.03 42.18 16 19 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 20 H -0.27 -10.42 7.11 99.48 0.71 -9.71 16 21 H -0.26 -10.49 7.11 99.48 0.71 -9.78 16 22 C -0.14 -7.79 8.64 22.47 0.19 -7.60 16 23 C -0.16 -7.73 9.82 22.15 0.22 -7.51 16 24 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 25 H 0.06 1.70 6.55 -2.38 -0.02 1.68 16 26 H 0.05 1.75 6.06 -2.39 -0.01 1.73 16 27 H 0.40 6.64 6.82 -92.70 -0.63 6.01 16 28 H 0.41 4.97 8.84 -92.71 -0.82 4.15 16 29 H 0.14 2.28 8.06 -2.91 -0.02 2.26 16 30 H 0.15 2.52 8.06 -2.91 -0.02 2.50 16 31 H 0.12 3.31 8.06 -2.91 -0.02 3.29 16 32 H 0.40 12.62 8.82 -92.71 -0.82 11.80 16 33 H 0.10 4.36 6.69 -2.91 -0.02 4.34 16 34 H 0.09 4.57 8.06 -2.91 -0.02 4.54 16 35 H 0.28 14.05 8.30 -92.71 -0.77 13.28 16 36 H 0.10 5.72 6.20 -2.91 -0.02 5.70 16 37 H 0.11 4.58 8.06 -2.91 -0.02 4.55 16 Total: -1.00 -63.87 308.25 3.03 -60.84 By element: Atomic # 1 Polarization: 43.06 SS G_CDS: -1.15 Total: 41.91 kcal Atomic # 6 Polarization: -61.16 SS G_CDS: 3.22 Total: -57.94 kcal Atomic # 7 Polarization: -85.91 SS G_CDS: -1.07 Total: -86.98 kcal Atomic # 14 Polarization: 40.14 SS G_CDS: 2.03 Total: 42.18 kcal Total: -63.87 3.03 -60.84 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062725391.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.920 kcal (2) G-P(sol) polarization free energy of solvation -63.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.840 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds