Wall clock time and date at job start Mon Mar 30 2020 07:18:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47413 * 2 1 4 4 O 1.42901 * 109.47628 * 239.99590 * 2 1 3 5 5 C 1.50704 * 109.46960 * 119.99706 * 2 1 3 6 6 C 1.38180 * 120.00378 * 94.99891 * 5 2 1 7 7 C 1.38209 * 120.08200 * 179.97438 * 6 5 2 8 8 C 1.38512 * 120.08309 * 359.97438 * 7 6 5 9 9 F 1.35099 * 119.99575 * 180.02562 * 8 7 6 10 10 C 1.38345 * 120.00832 * 359.97438 * 8 7 6 11 11 C 1.38713 * 119.91932 * 0.02562 * 10 8 7 12 12 O 1.35891 * 120.04439 * 180.02562 * 11 10 8 13 13 C 1.42899 * 116.99973 * 359.97438 * 12 11 10 14 14 C 1.53001 * 109.47261 * 180.02562 * 13 12 11 15 15 C 1.52998 * 109.47210 * 180.02562 * 14 13 12 16 16 C 1.50704 * 109.47405 * 180.02562 * 15 14 13 17 17 H 1.08002 * 119.99598 * 359.97438 * 16 15 14 18 18 C 1.37878 * 120.00350 * 179.97438 * 16 15 14 19 19 N 1.31514 * 119.99808 * 359.97438 * 18 16 15 20 20 Si 1.86795 * 119.99976 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47460 * 359.97438 * 20 18 16 22 22 H 1.48503 * 109.47101 * 119.99791 * 20 18 16 23 23 H 1.48504 * 109.47014 * 239.99660 * 20 18 16 24 24 H 1.08999 * 109.47303 * 300.00777 * 1 2 3 25 25 H 1.09004 * 109.46563 * 60.00005 * 1 2 3 26 26 H 1.08998 * 109.47413 * 180.02562 * 1 2 3 27 27 H 0.96701 * 113.99786 * 300.01041 * 4 2 1 28 28 H 1.07996 * 119.95609 * 359.97438 * 6 5 2 29 29 H 1.08000 * 119.95525 * 179.97438 * 7 6 5 30 30 H 1.08003 * 120.04109 * 179.75104 * 10 8 7 31 31 H 1.08994 * 109.47485 * 300.00226 * 13 12 11 32 32 H 1.08999 * 109.47051 * 60.00416 * 13 12 11 33 33 H 1.09005 * 109.47152 * 299.99991 * 14 13 12 34 34 H 1.09001 * 109.47508 * 60.00132 * 14 13 12 35 35 H 1.09003 * 109.47037 * 299.99422 * 15 14 13 36 36 H 1.08999 * 109.47393 * 59.99922 * 15 14 13 37 37 H 0.96998 * 119.99870 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0064 -0.6737 -1.1667 5 6 2.0323 -0.7104 1.2305 6 6 2.3609 -2.0511 1.1687 7 6 2.8222 -2.7040 2.2961 8 6 2.9568 -2.0160 3.4906 9 9 3.4084 -2.6558 4.5915 10 6 2.6298 -0.6733 3.5564 11 6 2.1668 -0.0178 2.4250 12 8 1.8454 1.3011 2.4866 13 6 2.0082 1.9503 3.7492 14 6 1.5991 3.4192 3.6239 15 6 1.7740 4.1144 4.9756 16 6 1.3704 5.5612 4.8525 17 1 1.0242 5.9464 3.9047 18 6 1.4432 6.3930 5.9496 19 7 1.8643 5.9238 7.1038 20 14 0.9422 8.1861 5.7970 21 1 0.5080 8.4620 4.4040 22 1 -0.1780 8.4682 6.7303 23 1 2.0989 9.0537 6.1355 24 1 -0.3634 0.5139 0.8899 25 1 -0.3632 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.7210 -1.5953 -1.2328 28 1 2.2571 -2.5894 0.2382 29 1 3.0781 -3.7521 2.2455 30 1 2.7307 -0.1373 4.4886 31 1 1.3799 1.4607 4.4932 32 1 3.0519 1.8885 4.0575 33 1 2.2271 3.9092 2.8798 34 1 0.5554 3.4808 3.3158 35 1 1.1462 3.6246 5.7200 36 1 2.8178 4.0530 5.2834 37 1 1.9158 6.5091 7.8755 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000062749031.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:18:51 Heat of formation + Delta-G solvation = -132.466703 kcal Electronic energy + Delta-G solvation = -19843.338705 eV Core-core repulsion = 16499.711871 eV Total energy + Delta-G solvation = -3343.626834 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.126 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -49.02364 -40.45661 -38.10904 -36.69863 -34.11752 -32.16008 -31.59363 -30.40758 -28.96783 -27.03282 -24.21211 -23.66256 -22.22820 -21.45095 -20.24556 -18.62202 -17.27599 -17.11005 -16.33057 -16.11533 -15.85976 -15.53422 -15.31808 -14.93803 -14.49478 -14.26280 -14.14613 -13.60146 -13.16974 -12.81228 -12.78302 -12.23011 -12.04418 -11.90391 -11.78287 -11.55704 -11.10672 -11.04861 -10.72219 -10.66972 -10.60096 -10.33486 -9.84850 -9.60048 -9.20340 -9.00650 -8.43494 -8.26033 -6.08241 -4.11173 0.92671 1.14809 3.23064 3.27476 3.35354 3.37016 3.39937 4.06269 4.21020 4.40697 4.46514 4.56395 4.81781 5.02931 5.06631 5.09330 5.28191 5.32459 5.41251 5.45194 5.56478 5.71703 5.82417 5.84746 5.96264 6.03583 6.04002 6.23424 6.44554 6.45595 6.66592 6.90178 7.36356 7.43248 7.54237 7.64321 7.89902 8.30958 8.95235 9.53700 11.03279 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.021974 B = 0.003840 C = 0.003327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.905565 B = 7290.053047 C = 8413.258956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.154 3.846 3 H 0.116 0.884 4 O -0.558 6.558 5 C -0.167 4.167 6 C -0.050 4.050 7 C -0.197 4.197 8 C 0.139 3.861 9 F -0.138 7.138 10 C -0.246 4.246 11 C 0.179 3.821 12 O -0.306 6.306 13 C 0.055 3.945 14 C -0.107 4.107 15 C 0.024 3.976 16 C -0.522 4.522 17 H 0.058 0.942 18 C 0.057 3.943 19 N -0.895 5.895 20 Si 0.894 3.106 21 H -0.272 1.272 22 H -0.283 1.283 23 H -0.283 1.283 24 H 0.073 0.927 25 H 0.067 0.933 26 H 0.056 0.944 27 H 0.369 0.631 28 H 0.136 0.864 29 H 0.135 0.865 30 H 0.146 0.854 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.019 0.981 36 H 0.019 0.981 37 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.396 -17.567 -11.873 21.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.095 3.905 3 H 0.133 0.867 4 O -0.363 6.363 5 C -0.168 4.168 6 C -0.068 4.068 7 C -0.216 4.216 8 C 0.119 3.881 9 F -0.116 7.116 10 C -0.265 4.265 11 C 0.131 3.869 12 O -0.219 6.219 13 C -0.019 4.019 14 C -0.145 4.145 15 C -0.013 4.013 16 C -0.560 4.560 17 H 0.076 0.924 18 C -0.144 4.144 19 N -0.534 5.534 20 Si 0.722 3.278 21 H -0.196 1.196 22 H -0.209 1.209 23 H -0.209 1.209 24 H 0.092 0.908 25 H 0.086 0.914 26 H 0.075 0.925 27 H 0.217 0.783 28 H 0.153 0.847 29 H 0.153 0.847 30 H 0.163 0.837 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.037 0.963 36 H 0.037 0.963 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -0.152 -16.799 -11.898 20.587 hybrid contribution -0.292 0.238 0.878 0.956 sum -0.444 -16.561 -11.020 19.897 Atomic orbital electron populations 1.22440 0.95230 1.02372 1.03438 1.20608 0.93102 0.96224 0.80529 0.86670 1.86660 1.77259 1.28844 1.43574 1.19978 1.07372 0.94569 0.94910 1.20458 0.95898 0.92580 0.97842 1.20912 1.07608 1.01162 0.91888 1.17412 0.97301 0.90221 0.83133 1.91507 1.86412 1.81703 1.51983 1.21301 1.09886 0.94741 1.00599 1.18516 0.91872 0.84153 0.92321 1.86142 1.80508 1.18450 1.36798 1.23335 1.01099 0.95264 0.82215 1.21736 1.01279 0.89221 1.02279 1.19057 0.97518 0.95031 0.89709 1.21206 1.44076 0.94503 0.96200 0.92357 1.25022 0.95204 0.98889 0.95300 1.69967 1.46973 1.35831 1.00630 0.86494 0.78245 0.84827 0.78213 1.19634 1.20946 1.20941 0.90809 0.91443 0.92516 0.78295 0.84672 0.84715 0.83660 0.92017 0.92002 0.92034 0.92059 0.96294 0.96276 0.92923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.73 9.52 37.16 0.35 -1.38 16 2 C 0.15 1.71 3.55 -27.88 -0.10 1.61 16 3 H 0.12 1.47 7.69 -51.93 -0.40 1.07 16 4 O -0.56 -5.69 12.99 -35.23 -0.46 -6.15 16 5 C -0.17 -1.98 5.08 -104.46 -0.53 -2.51 16 6 C -0.05 -0.48 9.30 -39.61 -0.37 -0.85 16 7 C -0.20 -2.05 10.02 -39.49 -0.40 -2.44 16 8 C 0.14 1.76 7.30 -39.44 -0.29 1.47 16 9 F -0.14 -1.81 17.27 2.25 0.04 -1.77 16 10 C -0.25 -3.36 9.02 -39.37 -0.35 -3.71 16 11 C 0.18 2.50 6.66 -39.22 -0.26 2.24 16 12 O -0.31 -4.77 9.27 -19.40 -0.18 -4.95 16 13 C 0.05 0.91 4.74 37.16 0.18 1.09 16 14 C -0.11 -2.13 5.52 -26.73 -0.15 -2.28 16 15 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 16 C -0.52 -14.45 9.11 -34.44 -0.31 -14.76 16 17 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 18 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 19 N -0.89 -26.42 13.29 55.43 0.74 -25.68 16 20 Si 0.89 21.33 29.54 -169.99 -5.02 16.31 16 21 H -0.27 -6.34 7.11 56.52 0.40 -5.93 16 22 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 23 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 24 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 25 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 26 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.37 2.23 7.32 45.56 0.33 2.56 16 28 H 0.14 0.84 6.40 -52.49 -0.34 0.51 16 29 H 0.13 1.09 8.06 -52.49 -0.42 0.66 16 30 H 0.15 1.97 6.30 -52.48 -0.33 1.64 16 31 H 0.06 0.98 7.66 -51.93 -0.40 0.58 16 32 H 0.06 1.00 7.66 -51.93 -0.40 0.60 16 33 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 34 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 37 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 318.05 15.07 4.79 4.79 Total: -1.00 -30.47 318.05 -7.01 -37.48 By element: Atomic # 1 Polarization: 3.98 SS G_CDS: -4.45 Total: -0.47 kcal Atomic # 6 Polarization: -17.09 SS G_CDS: -2.47 Total: -19.55 kcal Atomic # 7 Polarization: -26.42 SS G_CDS: 0.74 Total: -25.68 kcal Atomic # 8 Polarization: -10.46 SS G_CDS: -0.64 Total: -11.10 kcal Atomic # 9 Polarization: -1.81 SS G_CDS: 0.04 Total: -1.77 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -30.47 -7.01 -37.48 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062749031.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.990 kcal (2) G-P(sol) polarization free energy of solvation -30.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds