Wall clock time and date at job start Mon Mar 30 2020 07:18:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47413 * 2 1 4 4 O 1.42901 * 109.47628 * 239.99590 * 2 1 3 5 5 C 1.50704 * 109.46960 * 119.99706 * 2 1 3 6 6 C 1.38180 * 120.00378 * 94.99891 * 5 2 1 7 7 C 1.38209 * 120.08200 * 179.97438 * 6 5 2 8 8 C 1.38512 * 120.08309 * 359.97438 * 7 6 5 9 9 F 1.35099 * 119.99575 * 180.02562 * 8 7 6 10 10 C 1.38345 * 120.00832 * 359.97438 * 8 7 6 11 11 C 1.38713 * 119.91932 * 0.02562 * 10 8 7 12 12 O 1.35891 * 120.04439 * 180.02562 * 11 10 8 13 13 C 1.42899 * 116.99973 * 359.97438 * 12 11 10 14 14 C 1.53001 * 109.47261 * 180.02562 * 13 12 11 15 15 C 1.52998 * 109.47210 * 180.02562 * 14 13 12 16 16 C 1.50704 * 109.47405 * 180.02562 * 15 14 13 17 17 H 1.08002 * 119.99598 * 359.97438 * 16 15 14 18 18 C 1.37878 * 120.00350 * 179.97438 * 16 15 14 19 19 N 1.31514 * 119.99808 * 359.97438 * 18 16 15 20 20 Si 1.86795 * 119.99976 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47460 * 359.97438 * 20 18 16 22 22 H 1.48503 * 109.47101 * 119.99791 * 20 18 16 23 23 H 1.48504 * 109.47014 * 239.99660 * 20 18 16 24 24 H 1.08999 * 109.47303 * 300.00777 * 1 2 3 25 25 H 1.09004 * 109.46563 * 60.00005 * 1 2 3 26 26 H 1.08998 * 109.47413 * 180.02562 * 1 2 3 27 27 H 0.96701 * 113.99786 * 300.01041 * 4 2 1 28 28 H 1.07996 * 119.95609 * 359.97438 * 6 5 2 29 29 H 1.08000 * 119.95525 * 179.97438 * 7 6 5 30 30 H 1.08003 * 120.04109 * 179.75104 * 10 8 7 31 31 H 1.08994 * 109.47485 * 300.00226 * 13 12 11 32 32 H 1.08999 * 109.47051 * 60.00416 * 13 12 11 33 33 H 1.09005 * 109.47152 * 299.99991 * 14 13 12 34 34 H 1.09001 * 109.47508 * 60.00132 * 14 13 12 35 35 H 1.09003 * 109.47037 * 299.99422 * 15 14 13 36 36 H 1.08999 * 109.47393 * 59.99922 * 15 14 13 37 37 H 0.96998 * 119.99870 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0064 -0.6737 -1.1667 5 6 2.0323 -0.7104 1.2305 6 6 2.3609 -2.0511 1.1687 7 6 2.8222 -2.7040 2.2961 8 6 2.9568 -2.0160 3.4906 9 9 3.4084 -2.6558 4.5915 10 6 2.6298 -0.6733 3.5564 11 6 2.1668 -0.0178 2.4250 12 8 1.8454 1.3011 2.4866 13 6 2.0082 1.9503 3.7492 14 6 1.5991 3.4192 3.6239 15 6 1.7740 4.1144 4.9756 16 6 1.3704 5.5612 4.8525 17 1 1.0242 5.9464 3.9047 18 6 1.4432 6.3930 5.9496 19 7 1.8643 5.9238 7.1038 20 14 0.9422 8.1861 5.7970 21 1 0.5080 8.4620 4.4040 22 1 -0.1780 8.4682 6.7303 23 1 2.0989 9.0537 6.1355 24 1 -0.3634 0.5139 0.8899 25 1 -0.3632 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.7210 -1.5953 -1.2328 28 1 2.2571 -2.5894 0.2382 29 1 3.0781 -3.7521 2.2455 30 1 2.7307 -0.1373 4.4886 31 1 1.3799 1.4607 4.4932 32 1 3.0519 1.8885 4.0575 33 1 2.2271 3.9092 2.8798 34 1 0.5554 3.4808 3.3158 35 1 1.1462 3.6246 5.7200 36 1 2.8178 4.0530 5.2834 37 1 1.9158 6.5091 7.8755 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000062749031.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:18:51 Heat of formation + Delta-G solvation = -151.316140 kcal Electronic energy + Delta-G solvation = -19844.156078 eV Core-core repulsion = 16499.711871 eV Total energy + Delta-G solvation = -3344.444207 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.126 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -50.01161 -41.47228 -39.13377 -37.60145 -35.99795 -33.79445 -32.72423 -31.39043 -29.93307 -28.74502 -25.61648 -24.80077 -23.42358 -22.59598 -21.72338 -19.67802 -18.63235 -18.09466 -17.91651 -17.35100 -16.98039 -16.61592 -16.46577 -16.16903 -15.81247 -15.37872 -15.14017 -14.97542 -14.39433 -14.02788 -13.82744 -13.76533 -13.48446 -13.11618 -12.82558 -12.76814 -12.60359 -12.39590 -12.24240 -12.17665 -11.84756 -11.57230 -11.51054 -11.25566 -11.16986 -10.59177 -9.94704 -9.24861 -8.23765 -6.34741 -0.00536 0.21554 1.40169 1.40689 1.54004 2.05796 2.41069 2.45090 3.10577 3.11869 3.44552 3.60435 3.67246 3.96139 3.98514 3.99613 4.13772 4.24404 4.27622 4.39665 4.49743 4.75868 4.78366 4.84873 4.91786 4.95810 5.01175 5.09127 5.16028 5.27093 5.36967 5.45873 5.62865 5.66866 5.78735 6.15752 6.26843 6.81115 6.84734 7.34995 8.88523 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.021974 B = 0.003840 C = 0.003327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.905565 B = 7290.053047 C = 8413.258956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.159 3.841 3 H 0.092 0.908 4 O -0.565 6.565 5 C -0.167 4.167 6 C -0.039 4.039 7 C -0.182 4.182 8 C 0.120 3.880 9 F -0.144 7.144 10 C -0.261 4.261 11 C 0.152 3.848 12 O -0.314 6.314 13 C 0.068 3.932 14 C -0.094 4.094 15 C 0.027 3.973 16 C -0.544 4.544 17 H 0.062 0.938 18 C 0.001 3.999 19 N -0.932 5.932 20 Si 0.966 3.034 21 H -0.262 1.262 22 H -0.277 1.277 23 H -0.278 1.278 24 H 0.055 0.945 25 H 0.072 0.928 26 H 0.077 0.923 27 H 0.390 0.610 28 H 0.179 0.821 29 H 0.166 0.834 30 H 0.135 0.865 31 H 0.064 0.936 32 H 0.062 0.938 33 H 0.061 0.939 34 H 0.063 0.937 35 H -0.001 1.001 36 H -0.002 1.002 37 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.844 -18.808 -13.874 23.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.100 3.900 3 H 0.110 0.890 4 O -0.374 6.374 5 C -0.169 4.169 6 C -0.057 4.057 7 C -0.201 4.201 8 C 0.101 3.899 9 F -0.123 7.123 10 C -0.280 4.280 11 C 0.106 3.894 12 O -0.228 6.228 13 C -0.006 4.006 14 C -0.132 4.132 15 C -0.010 4.010 16 C -0.582 4.582 17 H 0.080 0.920 18 C -0.197 4.197 19 N -0.573 5.573 20 Si 0.791 3.209 21 H -0.185 1.185 22 H -0.203 1.203 23 H -0.204 1.204 24 H 0.074 0.926 25 H 0.091 0.909 26 H 0.096 0.904 27 H 0.240 0.760 28 H 0.196 0.804 29 H 0.183 0.817 30 H 0.153 0.847 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.017 0.983 36 H 0.016 0.984 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -0.604 -18.071 -13.917 22.817 hybrid contribution -0.123 0.489 1.443 1.528 sum -0.726 -17.582 -12.474 21.570 Atomic orbital electron populations 1.22385 0.94186 1.03571 1.02820 1.20412 0.93761 0.95240 0.80589 0.89044 1.86636 1.77415 1.30526 1.42774 1.20248 1.06876 0.95515 0.94226 1.20946 0.93872 0.91590 0.99270 1.21312 1.05591 1.02445 0.90764 1.17651 0.98207 0.90062 0.83962 1.91487 1.86612 1.81661 1.52548 1.21314 1.10806 0.95594 1.00325 1.18756 0.93731 0.83419 0.93506 1.86073 1.81361 1.19790 1.35561 1.22937 1.01049 0.93536 0.83094 1.21421 1.01501 0.91083 0.99202 1.18925 0.95548 0.94638 0.91897 1.21659 1.44051 0.95966 0.96498 0.91968 1.25961 0.95066 1.03765 0.94878 1.70090 1.48040 1.37656 1.01475 0.85379 0.77990 0.78906 0.78667 1.18543 1.20307 1.20375 0.92561 0.90911 0.90416 0.75969 0.80363 0.81672 0.84711 0.91736 0.91990 0.92030 0.91811 0.98270 0.98383 0.92667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.05 9.52 71.98 0.68 -2.37 16 2 C 0.16 3.27 3.55 29.85 0.11 3.38 16 3 H 0.09 2.32 7.69 -2.39 -0.02 2.30 16 4 O -0.56 -9.81 12.99 -148.98 -1.94 -11.75 16 5 C -0.17 -3.67 5.08 -19.76 -0.10 -3.77 16 6 C -0.04 -0.62 9.30 22.25 0.21 -0.41 16 7 C -0.18 -3.21 10.02 22.33 0.22 -2.99 16 8 C 0.12 2.93 7.30 22.36 0.16 3.09 16 9 F -0.14 -3.73 17.27 44.97 0.78 -2.95 16 10 C -0.26 -7.20 9.02 22.41 0.20 -7.00 16 11 C 0.15 4.23 6.66 22.50 0.15 4.38 16 12 O -0.31 -9.99 9.27 -92.32 -0.86 -10.85 16 13 C 0.07 2.36 4.74 71.98 0.34 2.70 16 14 C -0.09 -3.86 5.52 30.59 0.17 -3.69 16 15 C 0.03 1.40 4.97 29.85 0.15 1.55 16 16 C -0.54 -30.66 9.11 25.60 0.23 -30.43 16 17 H 0.06 3.37 7.74 -2.91 -0.02 3.35 16 18 C 0.00 0.07 5.46 84.65 0.46 0.53 16 19 N -0.93 -56.19 13.29 21.45 0.28 -55.90 16 20 Si 0.97 43.90 29.54 68.60 2.03 45.93 16 21 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 22 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 23 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 24 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 25 H 0.07 1.20 8.14 -2.38 -0.02 1.18 16 26 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 27 H 0.39 2.98 7.32 -74.06 -0.54 2.43 16 28 H 0.18 1.21 6.40 -2.91 -0.02 1.19 16 29 H 0.17 1.91 8.06 -2.91 -0.02 1.89 16 30 H 0.14 3.87 6.30 -2.91 -0.02 3.85 16 31 H 0.06 2.15 7.66 -2.39 -0.02 2.13 16 32 H 0.06 2.10 7.66 -2.39 -0.02 2.08 16 33 H 0.06 2.49 8.14 -2.38 -0.02 2.47 16 34 H 0.06 2.54 8.14 -2.39 -0.02 2.52 16 35 H 0.00 -0.06 8.14 -2.39 -0.02 -0.08 16 36 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 37 H 0.26 14.92 8.31 -92.71 -0.77 14.15 16 Total: -1.00 -66.64 318.05 3.82 -62.82 By element: Atomic # 1 Polarization: 7.18 SS G_CDS: 0.53 Total: 7.71 kcal Atomic # 6 Polarization: -38.00 SS G_CDS: 2.99 Total: -35.01 kcal Atomic # 7 Polarization: -56.19 SS G_CDS: 0.28 Total: -55.90 kcal Atomic # 8 Polarization: -19.80 SS G_CDS: -2.79 Total: -22.59 kcal Atomic # 9 Polarization: -3.73 SS G_CDS: 0.78 Total: -2.95 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.93 kcal Total: -66.64 3.82 -62.82 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062749031.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.495 kcal (2) G-P(sol) polarization free energy of solvation -66.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds