Wall clock time and date at job start Mon Mar 30 2020 06:47:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46903 * 109.47120 * 240.00492 * 2 1 3 13 13 C 1.46896 * 110.99938 * 183.95522 * 12 2 1 14 14 C 1.46898 * 110.99849 * 60.00056 * 12 2 1 15 15 C 1.50705 * 109.46881 * 190.00038 * 14 12 2 16 16 C 1.38291 * 119.94996 * 269.72729 * 15 14 12 17 17 C 1.38277 * 120.15300 * 179.72797 * 16 15 14 18 18 C 1.38216 * 120.05917 * 0.54214 * 17 16 15 19 19 Cl 1.73602 * 120.04391 * 179.70571 * 18 17 16 20 20 C 1.38980 * 119.90709 * 359.73339 * 18 17 16 21 21 N 1.39749 * 120.07893 * 180.02562 * 20 18 17 22 22 C 1.38122 * 119.95059 * 90.00208 * 15 14 12 23 23 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 24 24 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 25 25 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 26 26 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 27 27 H 1.09000 * 109.47187 * 59.99958 * 13 12 2 28 28 H 1.08996 * 109.47272 * 180.02562 * 13 12 2 29 29 H 1.09005 * 109.47145 * 299.99616 * 13 12 2 30 30 H 1.09005 * 109.47168 * 309.99661 * 14 12 2 31 31 H 1.08999 * 109.47122 * 70.00053 * 14 12 2 32 32 H 1.07994 * 119.92593 * 359.97438 * 16 15 14 33 33 H 1.07997 * 119.96883 * 180.27632 * 17 16 15 34 34 H 0.97005 * 120.00142 * 179.97438 * 21 20 18 35 35 H 0.97002 * 120.00156 * 359.97438 * 21 20 18 36 36 H 1.07992 * 120.03305 * 359.97324 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.8269 -0.4203 5.2204 10 1 1.8258 -2.5205 4.0075 11 1 3.8063 -1.1213 4.0080 12 7 2.0197 -0.6924 -1.1995 13 6 3.4850 -0.7945 -1.1871 14 6 1.5487 -0.0262 -2.4211 15 6 1.8580 -0.8908 -3.6160 16 6 3.0607 -0.7431 -4.2823 17 6 3.3512 -1.5381 -5.3758 18 6 2.4347 -2.4758 -5.8130 19 17 2.7967 -3.4684 -7.1904 20 6 1.2228 -2.6225 -5.1486 21 7 0.2938 -3.5699 -5.5873 22 6 0.9374 -1.8258 -4.0474 23 1 -0.3634 0.5138 0.8899 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 0.7089 1.1611 3.4845 27 1 3.8029 -1.3532 -0.3068 28 1 3.8209 -1.3107 -2.0864 29 1 3.9187 0.2052 -1.1592 30 1 0.4722 0.1326 -2.3564 31 1 2.0519 0.9348 -2.5279 32 1 3.7764 -0.0078 -3.9456 33 1 4.2933 -1.4232 -5.8912 34 1 -0.5515 -3.6716 -5.1225 35 1 0.4943 -4.1258 -6.3565 36 1 -0.0032 -1.9375 -3.5287 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063085138.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:09 Heat of formation + Delta-G solvation = 21.500431 kcal Electronic energy + Delta-G solvation = -18127.898500 eV Core-core repulsion = 15251.577308 eV Total energy + Delta-G solvation = -2876.321192 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.104 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.53642 -37.12922 -36.20621 -34.52856 -32.83541 -31.00572 -29.23717 -28.40461 -26.74930 -24.66212 -23.42353 -22.28484 -20.97978 -19.34301 -17.00614 -16.96757 -16.32175 -15.85589 -15.21150 -14.51890 -14.14365 -13.92350 -13.65907 -13.54475 -13.44129 -12.68206 -12.36301 -11.95265 -11.64633 -11.53332 -11.28857 -11.06360 -10.98682 -10.78012 -10.77157 -10.58448 -10.35329 -10.11196 -10.01482 -9.80816 -8.90322 -8.53397 -8.37999 -7.49699 -7.15930 -6.01074 -4.05394 1.39603 1.65890 2.25113 3.32626 3.36820 3.39988 3.79881 3.87651 4.42111 4.88255 5.05775 5.25085 5.33053 5.47627 5.54271 5.63186 5.88039 6.04571 6.18063 6.23456 6.29281 6.41747 6.45618 6.79798 6.82804 6.84240 6.97685 7.03856 7.15058 7.40292 7.50889 7.68828 7.71506 7.83101 8.19920 8.31900 8.59364 9.00862 9.59534 11.05731 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.035180 B = 0.004006 C = 0.003951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.706331 B = 6988.473210 C = 7085.195681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.212 3.788 3 H -0.001 1.001 4 C -0.503 4.503 5 H 0.063 0.937 6 C 0.059 3.941 7 N -0.894 5.894 8 Si 0.897 3.103 9 H -0.288 1.288 10 H -0.277 1.277 11 H -0.278 1.278 12 N -0.529 5.529 13 C 0.034 3.966 14 C 0.080 3.920 15 C -0.004 4.004 16 C -0.161 4.161 17 C -0.066 4.066 18 C -0.124 4.124 19 Cl -0.089 7.089 20 C 0.226 3.774 21 N -0.875 5.875 22 C -0.166 4.166 23 H 0.085 0.915 24 H 0.008 0.992 25 H 0.034 0.966 26 H 0.261 0.739 27 H 0.074 0.926 28 H 0.049 0.951 29 H 0.011 0.989 30 H 0.085 0.915 31 H 0.033 0.967 32 H 0.124 0.876 33 H 0.127 0.873 34 H 0.401 0.599 35 H 0.397 0.603 36 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.798 -5.042 -16.414 17.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.106 3.894 3 H 0.016 0.984 4 C -0.542 4.542 5 H 0.081 0.919 6 C -0.142 4.142 7 N -0.533 5.533 8 Si 0.725 3.275 9 H -0.214 1.214 10 H -0.202 1.202 11 H -0.203 1.203 12 N -0.254 5.254 13 C -0.115 4.115 14 C -0.047 4.047 15 C -0.006 4.006 16 C -0.182 4.182 17 C -0.085 4.085 18 C -0.155 4.155 19 Cl -0.061 7.061 20 C 0.120 3.880 21 N -0.415 5.415 22 C -0.190 4.190 23 H 0.104 0.896 24 H 0.027 0.973 25 H 0.053 0.947 26 H 0.071 0.929 27 H 0.093 0.907 28 H 0.068 0.932 29 H 0.029 0.971 30 H 0.103 0.897 31 H 0.051 0.949 32 H 0.142 0.858 33 H 0.145 0.855 34 H 0.229 0.771 35 H 0.227 0.773 36 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 0.571 -5.452 -16.347 17.241 hybrid contribution 0.442 -0.004 0.637 0.776 sum 1.013 -5.456 -15.709 16.660 Atomic orbital electron populations 1.21868 0.97772 0.99650 0.99889 1.19271 0.92314 0.92029 0.85774 0.98367 1.21114 1.31057 1.12285 0.89698 0.91893 1.24925 0.95213 0.95072 0.98988 1.69881 1.36931 1.23018 1.23508 0.86584 0.79098 0.79763 0.82095 1.21377 1.20234 1.20343 1.62172 1.09547 1.52318 1.01332 1.22292 0.88637 0.99067 1.01472 1.21182 1.01564 0.93371 0.88633 1.19842 0.92505 0.94100 0.94151 1.20818 0.97848 1.02368 0.97157 1.20714 0.97878 0.93691 0.96198 1.20228 0.97075 1.02410 0.95790 1.98304 1.94570 1.69940 1.43251 1.17448 0.88076 0.89886 0.92596 1.42515 1.20109 1.41876 1.37034 1.20444 1.02068 0.99059 0.97383 0.89620 0.97274 0.94656 0.92943 0.90737 0.93241 0.97077 0.89728 0.94877 0.85769 0.85535 0.77082 0.77330 0.85200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.19 8.76 37.16 0.33 -2.87 16 2 C 0.21 5.27 2.06 -68.87 -0.14 5.13 16 3 H 0.00 -0.03 8.14 -51.93 -0.42 -0.46 16 4 C -0.50 -13.63 7.93 -34.44 -0.27 -13.91 16 5 H 0.06 1.71 6.39 -52.49 -0.34 1.37 16 6 C 0.06 1.62 5.30 -17.82 -0.09 1.52 16 7 N -0.89 -25.24 11.32 55.43 0.63 -24.62 16 8 Si 0.90 21.21 29.54 -169.99 -5.02 16.19 16 9 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 10 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 12 N -0.53 -11.22 4.61 -237.73 -1.10 -12.32 16 13 C 0.03 0.67 8.91 60.06 0.53 1.20 16 14 C 0.08 1.43 4.93 -4.97 -0.02 1.41 16 15 C 0.00 -0.07 4.88 -104.64 -0.51 -0.58 16 16 C -0.16 -2.27 7.91 -39.55 -0.31 -2.59 16 17 C -0.07 -0.85 9.82 -39.58 -0.39 -1.24 16 18 C -0.12 -1.62 6.34 -39.31 -0.25 -1.87 16 19 Cl -0.09 -1.01 27.60 -51.86 -1.43 -2.44 16 20 C 0.23 2.97 6.75 -83.73 -0.57 2.40 16 21 N -0.88 -8.96 9.05 32.43 0.29 -8.67 16 22 C -0.17 -2.42 9.55 -39.38 -0.38 -2.79 16 23 H 0.09 2.25 6.07 -51.93 -0.32 1.93 16 24 H 0.01 0.18 6.20 -51.93 -0.32 -0.14 16 25 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 26 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 27 H 0.07 1.58 6.23 -51.93 -0.32 1.26 16 28 H 0.05 0.86 5.90 -51.93 -0.31 0.56 16 29 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 30 H 0.08 1.51 5.77 -51.93 -0.30 1.21 16 31 H 0.03 0.59 8.06 -51.93 -0.42 0.17 16 32 H 0.12 1.64 8.00 -52.49 -0.42 1.22 16 33 H 0.13 1.38 8.06 -52.49 -0.42 0.96 16 34 H 0.40 3.39 8.84 -40.82 -0.36 3.03 16 35 H 0.40 3.64 7.51 -40.82 -0.31 3.33 16 36 H 0.13 1.82 8.06 -52.49 -0.42 1.39 16 LS Contribution 304.41 15.07 4.59 4.59 Total: -1.00 -28.52 304.41 -8.77 -37.29 By element: Atomic # 1 Polarization: 8.81 SS G_CDS: -4.66 Total: 4.15 kcal Atomic # 6 Polarization: -12.10 SS G_CDS: -2.08 Total: -14.17 kcal Atomic # 7 Polarization: -45.43 SS G_CDS: -0.18 Total: -45.60 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Atomic # 17 Polarization: -1.01 SS G_CDS: -1.43 Total: -2.44 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -28.52 -8.77 -37.29 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063085138.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.790 kcal (2) G-P(sol) polarization free energy of solvation -28.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.289 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds