Wall clock time and date at job start Mon Mar 30 2020 06:47:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46903 * 109.47120 * 240.00492 * 2 1 3 13 13 C 1.46896 * 110.99938 * 183.95522 * 12 2 1 14 14 C 1.46898 * 110.99849 * 60.00056 * 12 2 1 15 15 C 1.50705 * 109.46881 * 190.00038 * 14 12 2 16 16 C 1.38291 * 119.94996 * 269.72729 * 15 14 12 17 17 C 1.38277 * 120.15300 * 179.72797 * 16 15 14 18 18 C 1.38216 * 120.05917 * 0.54214 * 17 16 15 19 19 Cl 1.73602 * 120.04391 * 179.70571 * 18 17 16 20 20 C 1.38980 * 119.90709 * 359.73339 * 18 17 16 21 21 N 1.39749 * 120.07893 * 180.02562 * 20 18 17 22 22 C 1.38122 * 119.95059 * 90.00208 * 15 14 12 23 23 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 24 24 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 25 25 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 26 26 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 27 27 H 1.09000 * 109.47187 * 59.99958 * 13 12 2 28 28 H 1.08996 * 109.47272 * 180.02562 * 13 12 2 29 29 H 1.09005 * 109.47145 * 299.99616 * 13 12 2 30 30 H 1.09005 * 109.47168 * 309.99661 * 14 12 2 31 31 H 1.08999 * 109.47122 * 70.00053 * 14 12 2 32 32 H 1.07994 * 119.92593 * 359.97438 * 16 15 14 33 33 H 1.07997 * 119.96883 * 180.27632 * 17 16 15 34 34 H 0.97005 * 120.00142 * 179.97438 * 21 20 18 35 35 H 0.97002 * 120.00156 * 359.97438 * 21 20 18 36 36 H 1.07992 * 120.03305 * 359.97324 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.8269 -0.4203 5.2204 10 1 1.8258 -2.5205 4.0075 11 1 3.8063 -1.1213 4.0080 12 7 2.0197 -0.6924 -1.1995 13 6 3.4850 -0.7945 -1.1871 14 6 1.5487 -0.0262 -2.4211 15 6 1.8580 -0.8908 -3.6160 16 6 3.0607 -0.7431 -4.2823 17 6 3.3512 -1.5381 -5.3758 18 6 2.4347 -2.4758 -5.8130 19 17 2.7967 -3.4684 -7.1904 20 6 1.2228 -2.6225 -5.1486 21 7 0.2938 -3.5699 -5.5873 22 6 0.9374 -1.8258 -4.0474 23 1 -0.3634 0.5138 0.8899 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 0.7089 1.1611 3.4845 27 1 3.8029 -1.3532 -0.3068 28 1 3.8209 -1.3107 -2.0864 29 1 3.9187 0.2052 -1.1592 30 1 0.4722 0.1326 -2.3564 31 1 2.0519 0.9348 -2.5279 32 1 3.7764 -0.0078 -3.9456 33 1 4.2933 -1.4232 -5.8912 34 1 -0.5515 -3.6716 -5.1225 35 1 0.4943 -4.1258 -6.3565 36 1 -0.0032 -1.9375 -3.5287 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063085138.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:09 Heat of formation + Delta-G solvation = 3.849311 kcal Electronic energy + Delta-G solvation = -18128.663910 eV Core-core repulsion = 15251.577308 eV Total energy + Delta-G solvation = -2877.086602 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.104 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.64593 -38.65050 -37.26244 -35.66050 -34.63711 -32.33987 -30.96349 -29.54152 -28.30970 -26.54426 -24.96646 -23.39636 -22.29640 -21.05908 -18.41841 -17.96863 -17.88046 -17.10580 -16.87080 -15.95818 -15.74567 -15.35101 -15.09546 -14.62134 -14.56787 -14.24810 -14.01366 -13.56439 -12.97772 -12.92852 -12.73615 -12.63764 -12.58654 -12.43817 -12.19541 -12.04756 -11.93378 -11.73077 -11.52563 -11.44990 -10.86695 -10.49285 -9.59823 -8.90875 -8.44292 -8.09002 -6.20474 0.30568 0.61333 1.26785 1.44279 1.45578 1.53147 2.43910 2.75470 2.93245 3.19496 3.57622 3.84208 3.99878 4.31958 4.43041 4.50055 4.60534 4.73224 4.76838 4.78858 4.97666 5.00055 5.07093 5.12933 5.17859 5.28946 5.37488 5.53198 5.74271 5.75678 5.82107 5.87327 6.28751 6.41624 6.47510 6.75093 6.91687 6.93941 7.48507 8.96597 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.035180 B = 0.004006 C = 0.003951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.706331 B = 6988.473210 C = 7085.195681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.215 3.785 3 H -0.036 1.036 4 C -0.519 4.519 5 H 0.058 0.942 6 C 0.013 3.987 7 N -0.920 5.920 8 Si 0.958 3.042 9 H -0.284 1.284 10 H -0.273 1.273 11 H -0.272 1.272 12 N -0.535 5.535 13 C 0.040 3.960 14 C 0.085 3.915 15 C -0.019 4.019 16 C -0.169 4.169 17 C -0.061 4.061 18 C -0.132 4.132 19 Cl -0.072 7.072 20 C 0.226 3.774 21 N -0.864 5.864 22 C -0.177 4.177 23 H 0.059 0.941 24 H 0.033 0.967 25 H 0.031 0.969 26 H 0.261 0.739 27 H 0.055 0.945 28 H 0.074 0.926 29 H 0.008 0.992 30 H 0.081 0.919 31 H 0.032 0.968 32 H 0.130 0.870 33 H 0.148 0.852 34 H 0.410 0.590 35 H 0.404 0.596 36 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.285 -6.299 -17.703 18.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.109 3.891 3 H -0.018 1.018 4 C -0.557 4.557 5 H 0.076 0.924 6 C -0.186 4.186 7 N -0.560 5.560 8 Si 0.783 3.217 9 H -0.210 1.210 10 H -0.198 1.198 11 H -0.197 1.197 12 N -0.259 5.259 13 C -0.108 4.108 14 C -0.042 4.042 15 C -0.021 4.021 16 C -0.189 4.189 17 C -0.080 4.080 18 C -0.163 4.163 19 Cl -0.044 7.044 20 C 0.119 3.881 21 N -0.405 5.405 22 C -0.201 4.201 23 H 0.078 0.922 24 H 0.052 0.948 25 H 0.051 0.949 26 H 0.070 0.930 27 H 0.074 0.926 28 H 0.093 0.907 29 H 0.027 0.973 30 H 0.099 0.901 31 H 0.050 0.950 32 H 0.148 0.852 33 H 0.166 0.834 34 H 0.240 0.760 35 H 0.235 0.765 36 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 1.046 -6.733 -17.664 18.932 hybrid contribution 0.286 0.350 0.901 1.008 sum 1.332 -6.383 -16.763 17.986 Atomic orbital electron populations 1.21675 0.97172 0.99300 0.99822 1.19075 0.92775 0.90221 0.87052 1.01815 1.21399 1.31112 1.12271 0.90949 0.92365 1.25679 0.95389 0.95746 1.01782 1.70009 1.37773 1.24147 1.24064 0.85616 0.78714 0.78686 0.78635 1.20986 1.19787 1.19747 1.62090 1.10345 1.52142 1.01352 1.22238 0.87893 0.98911 1.01797 1.21134 1.01167 0.93762 0.88171 1.19647 0.93782 0.94768 0.93868 1.20883 0.97461 1.02940 0.97647 1.20937 0.98618 0.92886 0.95587 1.20404 0.97063 1.02594 0.96273 1.98311 1.94468 1.69389 1.42229 1.17474 0.88614 0.89941 0.92112 1.42506 1.19980 1.40961 1.37033 1.20468 1.02067 0.99406 0.98139 0.92177 0.94827 0.94948 0.92958 0.92576 0.90710 0.97334 0.90054 0.94954 0.85167 0.83380 0.76013 0.76500 0.85182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.88 8.76 71.98 0.63 -5.25 16 2 C 0.22 10.94 2.06 44.17 0.09 11.03 16 3 H -0.04 -2.01 8.14 -2.39 -0.02 -2.03 16 4 C -0.52 -28.52 7.93 25.60 0.20 -28.32 16 5 H 0.06 3.19 6.39 -2.91 -0.02 3.17 16 6 C 0.01 0.70 5.30 84.66 0.45 1.15 16 7 N -0.92 -52.79 11.32 21.45 0.24 -52.54 16 8 Si 0.96 43.62 29.54 68.60 2.03 45.65 16 9 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 10 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 11 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 12 N -0.53 -22.74 4.61 -906.04 -4.18 -26.92 16 13 C 0.04 1.57 8.91 127.69 1.14 2.71 16 14 C 0.09 3.02 4.93 85.56 0.42 3.44 16 15 C -0.02 -0.58 4.88 -19.88 -0.10 -0.67 16 16 C -0.17 -4.46 7.91 22.29 0.18 -4.29 16 17 C -0.06 -1.43 9.82 22.27 0.22 -1.22 16 18 C -0.13 -3.13 6.34 22.44 0.14 -2.98 16 19 Cl -0.07 -1.45 27.60 -2.72 -0.08 -1.53 16 20 C 0.23 5.48 6.75 38.21 0.26 5.74 16 21 N -0.86 -15.73 9.05 -51.30 -0.46 -16.20 16 22 C -0.18 -4.92 9.55 22.40 0.21 -4.71 16 23 H 0.06 3.22 6.07 -2.39 -0.01 3.20 16 24 H 0.03 1.41 6.20 -2.38 -0.01 1.39 16 25 H 0.03 1.53 8.14 -2.39 -0.02 1.51 16 26 H 0.26 14.30 8.31 -92.71 -0.77 13.53 16 27 H 0.06 2.39 6.23 -2.39 -0.01 2.37 16 28 H 0.07 2.53 5.90 -2.39 -0.01 2.52 16 29 H 0.01 0.32 8.14 -2.38 -0.02 0.30 16 30 H 0.08 2.88 5.77 -2.38 -0.01 2.87 16 31 H 0.03 1.14 8.06 -2.39 -0.02 1.12 16 32 H 0.13 3.22 8.00 -2.91 -0.02 3.20 16 33 H 0.15 2.76 8.06 -2.91 -0.02 2.74 16 34 H 0.41 6.07 8.84 -92.70 -0.82 5.25 16 35 H 0.40 6.37 7.51 -92.71 -0.70 5.67 16 36 H 0.13 3.51 8.06 -2.91 -0.02 3.49 16 Total: -1.00 -60.39 304.41 0.99 -59.40 By element: Atomic # 1 Polarization: 15.92 SS G_CDS: -0.40 Total: 15.52 kcal Atomic # 6 Polarization: -27.22 SS G_CDS: 3.85 Total: -23.37 kcal Atomic # 7 Polarization: -91.26 SS G_CDS: -4.40 Total: -95.66 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.65 kcal Atomic # 17 Polarization: -1.45 SS G_CDS: -0.08 Total: -1.53 kcal Total: -60.39 0.99 -59.40 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063085138.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.246 kcal (2) G-P(sol) polarization free energy of solvation -60.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.397 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds