Wall clock time and date at job start Mon Mar 30 2020 06:47:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.46983 * 2 1 4 4 C 1.50697 * 109.47015 * 239.99700 * 2 1 3 5 5 H 1.08000 * 120.00206 * 239.99706 * 4 2 1 6 6 C 1.37875 * 120.00031 * 60.00360 * 4 2 1 7 7 N 1.31515 * 119.99662 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 120.00055 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46828 * 59.99925 * 8 6 4 10 10 H 1.48503 * 109.47068 * 179.97438 * 8 6 4 11 11 H 1.48493 * 109.47456 * 299.99889 * 8 6 4 12 12 N 1.46907 * 109.46870 * 119.99625 * 2 1 3 13 13 C 1.46898 * 110.99873 * 58.95553 * 12 2 1 14 14 C 1.46896 * 111.00089 * 294.99795 * 12 2 1 15 15 C 1.50702 * 109.46968 * 189.99791 * 14 12 2 16 16 C 1.38297 * 119.94954 * 90.00558 * 15 14 12 17 17 C 1.38270 * 120.15335 * 180.29697 * 16 15 14 18 18 C 1.38214 * 120.06382 * 359.45054 * 17 16 15 19 19 Cl 1.73596 * 120.04963 * 180.27842 * 18 17 16 20 20 C 1.38982 * 119.90069 * 0.54283 * 18 17 16 21 21 N 1.39754 * 120.07715 * 179.74900 * 20 18 17 22 22 C 1.38120 * 119.95685 * 270.02321 * 15 14 12 23 23 H 1.09001 * 109.46882 * 300.00064 * 1 2 3 24 24 H 1.09004 * 109.47002 * 60.00144 * 1 2 3 25 25 H 1.09004 * 109.47065 * 180.02562 * 1 2 3 26 26 H 0.97004 * 119.99759 * 180.02562 * 7 6 4 27 27 H 1.09000 * 109.47241 * 296.04600 * 13 12 2 28 28 H 1.09008 * 109.47133 * 56.04360 * 13 12 2 29 29 H 1.08995 * 109.47010 * 176.04142 * 13 12 2 30 30 H 1.09004 * 109.47021 * 70.00210 * 14 12 2 31 31 H 1.08994 * 109.47433 * 310.00070 * 14 12 2 32 32 H 1.08002 * 119.91937 * 0.02562 * 16 15 14 33 33 H 1.08005 * 119.96947 * 179.69876 * 17 16 15 34 34 H 0.96996 * 120.00291 * 179.97438 * 21 20 18 35 35 H 0.96997 * 119.99917 * 359.97438 * 21 20 18 36 36 H 1.07994 * 120.02678 * 359.96109 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9428 0.8296 -2.6033 8 14 2.3225 -1.1197 -4.0078 9 1 1.8279 -2.5200 -4.0079 10 1 1.8269 -0.4200 -5.2204 11 1 3.8074 -1.1192 -4.0077 12 7 2.0196 -0.6925 1.1996 13 6 1.5283 -2.0760 1.2461 14 6 1.6487 0.0393 2.4181 15 6 2.3678 -0.5570 3.6006 16 6 3.6112 -0.0752 3.9673 17 6 4.2775 -0.6234 5.0478 18 6 3.6972 -1.6477 5.7721 19 17 4.5309 -2.3307 7.1330 20 6 2.4477 -2.1337 5.4058 21 7 1.8599 -3.1728 6.1323 22 6 1.7844 -1.5842 4.3164 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 0.7082 1.1608 -3.4844 27 1 0.4419 -2.0730 1.3348 28 1 1.8167 -2.5950 0.3319 29 1 1.9617 -2.5867 2.1060 30 1 0.5722 -0.0344 2.5726 31 1 1.9297 1.0870 2.3125 32 1 4.0647 0.7281 3.4057 33 1 5.2505 -0.2481 5.3286 34 1 0.9877 -3.5110 5.8759 35 1 2.3242 -3.5559 6.8929 36 1 0.8133 -1.9594 4.0293 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063085139.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:13 Heat of formation + Delta-G solvation = 20.748236 kcal Electronic energy + Delta-G solvation = -18152.001765 eV Core-core repulsion = 15275.647956 eV Total energy + Delta-G solvation = -2876.353809 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.104 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.55668 -37.24876 -36.24417 -34.57388 -32.85089 -31.02903 -28.78606 -28.33422 -26.53835 -25.15718 -23.65068 -22.42509 -20.93969 -19.18583 -17.01665 -16.94236 -16.24434 -15.82624 -15.19266 -14.59759 -14.25820 -13.94829 -13.60937 -13.54844 -13.23753 -12.81092 -12.50135 -11.84568 -11.60258 -11.49988 -11.20857 -11.04793 -11.01396 -10.79947 -10.75969 -10.60771 -10.47790 -10.39980 -10.00828 -9.79642 -8.89779 -8.52333 -8.37943 -7.49568 -7.14334 -6.00498 -4.04123 1.37720 1.67508 2.24853 3.33406 3.37591 3.40852 3.77253 3.87222 4.43101 4.86258 5.08785 5.27511 5.32742 5.44226 5.57046 5.64118 5.85868 6.06206 6.16854 6.19661 6.30956 6.40472 6.46048 6.67645 6.81964 6.87580 6.90842 6.95228 7.11880 7.37549 7.48299 7.65156 7.71650 7.83300 8.11666 8.38187 8.59285 9.01516 9.60819 11.06577 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.035767 B = 0.003980 C = 0.003920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.664437 B = 7033.152997 C = 7141.867719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.210 3.790 3 H 0.040 0.960 4 C -0.500 4.500 5 H 0.062 0.938 6 C 0.059 3.941 7 N -0.895 5.895 8 Si 0.896 3.104 9 H -0.278 1.278 10 H -0.288 1.288 11 H -0.277 1.277 12 N -0.526 5.526 13 C 0.032 3.968 14 C 0.085 3.915 15 C -0.005 4.005 16 C -0.145 4.145 17 C -0.065 4.065 18 C -0.123 4.123 19 Cl -0.089 7.089 20 C 0.224 3.776 21 N -0.876 5.876 22 C -0.181 4.181 23 H 0.007 0.993 24 H 0.088 0.912 25 H 0.030 0.970 26 H 0.260 0.740 27 H 0.014 0.986 28 H 0.073 0.927 29 H 0.046 0.954 30 H 0.036 0.964 31 H 0.078 0.922 32 H 0.130 0.870 33 H 0.128 0.872 34 H 0.399 0.601 35 H 0.398 0.602 36 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.932 -4.728 16.777 17.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.104 3.896 3 H 0.058 0.942 4 C -0.538 4.538 5 H 0.080 0.920 6 C -0.142 4.142 7 N -0.534 5.534 8 Si 0.725 3.275 9 H -0.204 1.204 10 H -0.214 1.214 11 H -0.202 1.202 12 N -0.250 5.250 13 C -0.117 4.117 14 C -0.043 4.043 15 C -0.007 4.007 16 C -0.166 4.166 17 C -0.085 4.085 18 C -0.154 4.154 19 Cl -0.060 7.060 20 C 0.119 3.881 21 N -0.417 5.417 22 C -0.205 4.205 23 H 0.026 0.974 24 H 0.107 0.893 25 H 0.049 0.951 26 H 0.070 0.930 27 H 0.033 0.967 28 H 0.092 0.908 29 H 0.065 0.935 30 H 0.055 0.945 31 H 0.096 0.904 32 H 0.148 0.852 33 H 0.146 0.854 34 H 0.228 0.772 35 H 0.227 0.773 36 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 2.455 -4.649 16.686 17.495 hybrid contribution -0.729 -0.816 -0.523 1.213 sum 1.726 -5.466 16.163 17.149 Atomic orbital electron populations 1.22413 1.00891 0.99341 1.00545 1.19339 0.89736 0.94618 0.85860 0.94195 1.21077 1.30602 1.12499 0.89633 0.91967 1.24916 0.95229 0.95126 0.98962 1.69876 1.37013 1.23059 1.23492 0.86586 0.79269 0.79577 0.82115 1.20411 1.21415 1.20208 1.62382 1.59390 1.01935 1.01252 1.22300 0.96545 0.91258 1.01562 1.21086 0.96206 0.98163 0.88833 1.19863 0.93880 0.92986 0.93946 1.20809 0.95225 1.02788 0.97745 1.20782 0.99363 0.93986 0.94320 1.20242 0.94958 1.03762 0.96432 1.98304 1.78103 1.84928 1.44711 1.17393 0.90474 0.88818 0.91449 1.42499 1.23672 1.39662 1.35844 1.20458 1.01770 1.01055 0.97188 0.97376 0.89324 0.95139 0.92967 0.96721 0.90811 0.93547 0.94550 0.90366 0.85209 0.85415 0.77242 0.77302 0.85729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.08 8.28 37.16 0.31 -3.78 16 2 C 0.21 5.18 2.34 -68.86 -0.16 5.02 16 3 H 0.04 1.08 8.03 -51.93 -0.42 0.66 16 4 C -0.50 -13.48 7.88 -34.44 -0.27 -13.75 16 5 H 0.06 1.69 6.77 -52.49 -0.36 1.33 16 6 C 0.06 1.60 5.30 -17.82 -0.09 1.50 16 7 N -0.90 -25.18 11.32 55.43 0.63 -24.55 16 8 Si 0.90 21.21 29.54 -169.99 -5.02 16.18 16 9 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 10 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 12 N -0.53 -11.05 4.73 -237.73 -1.13 -12.17 16 13 C 0.03 0.62 8.37 60.06 0.50 1.12 16 14 C 0.09 1.50 4.56 -4.98 -0.02 1.48 16 15 C -0.01 -0.08 4.88 -104.64 -0.51 -0.59 16 16 C -0.15 -2.10 9.69 -39.55 -0.38 -2.49 16 17 C -0.07 -0.86 9.82 -39.58 -0.39 -1.25 16 18 C -0.12 -1.60 6.34 -39.31 -0.25 -1.85 16 19 Cl -0.09 -1.01 27.60 -51.86 -1.43 -2.44 16 20 C 0.22 2.88 6.75 -83.73 -0.57 2.32 16 21 N -0.88 -8.66 9.05 32.43 0.29 -8.37 16 22 C -0.18 -2.54 7.81 -39.39 -0.31 -2.85 16 23 H 0.01 0.16 6.75 -51.93 -0.35 -0.19 16 24 H 0.09 2.33 6.07 -51.93 -0.32 2.01 16 25 H 0.03 0.70 6.47 -51.93 -0.34 0.36 16 26 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 27 H 0.01 0.28 6.51 -51.93 -0.34 -0.06 16 28 H 0.07 1.56 6.42 -51.92 -0.33 1.23 16 29 H 0.05 0.81 6.16 -51.93 -0.32 0.49 16 30 H 0.04 0.64 6.88 -51.93 -0.36 0.28 16 31 H 0.08 1.37 7.94 -51.93 -0.41 0.96 16 32 H 0.13 1.80 8.06 -52.49 -0.42 1.38 16 33 H 0.13 1.43 8.06 -52.48 -0.42 1.00 16 34 H 0.40 3.19 8.84 -40.82 -0.36 2.83 16 35 H 0.40 3.54 7.51 -40.82 -0.31 3.23 16 36 H 0.12 1.64 8.03 -52.49 -0.42 1.22 16 LS Contribution 302.38 15.07 4.56 4.56 Total: -1.00 -28.23 302.38 -8.85 -37.08 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: -4.60 Total: 4.81 kcal Atomic # 6 Polarization: -12.96 SS G_CDS: -2.15 Total: -15.11 kcal Atomic # 7 Polarization: -44.88 SS G_CDS: -0.20 Total: -45.09 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.18 kcal Atomic # 17 Polarization: -1.01 SS G_CDS: -1.43 Total: -2.44 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -28.23 -8.85 -37.08 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063085139.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.829 kcal (2) G-P(sol) polarization free energy of solvation -28.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.081 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds