Wall clock time and date at job start Mon Mar 30 2020 06:46:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09006 * 109.46767 * 2 1 4 4 C 1.50697 * 109.47308 * 120.00509 * 2 1 3 5 5 H 1.07997 * 120.00002 * 120.00411 * 4 2 1 6 6 C 1.37878 * 119.99893 * 299.99713 * 4 2 1 7 7 N 1.31514 * 119.99954 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00110 * 180.02562 * 6 4 2 9 9 H 1.48494 * 109.47004 * 60.00408 * 8 6 4 10 10 H 1.48502 * 109.46995 * 179.97438 * 8 6 4 11 11 H 1.48501 * 109.46995 * 299.99790 * 8 6 4 12 12 N 1.46903 * 109.47043 * 240.00538 * 2 1 3 13 13 C 1.46900 * 110.99761 * 183.95397 * 12 2 1 14 14 C 1.46898 * 111.00269 * 59.99572 * 12 2 1 15 15 C 1.50698 * 109.47365 * 190.26364 * 14 12 2 16 16 C 1.38132 * 119.96401 * 254.54986 * 15 14 12 17 17 C 1.38885 * 119.93368 * 179.72446 * 16 15 14 18 18 N 1.39734 * 120.06150 * 180.27087 * 17 16 15 19 19 C 1.38921 * 119.87275 * 0.54875 * 17 16 15 20 20 C 1.38091 * 119.94028 * 359.72468 * 19 17 16 21 21 C 1.38351 * 119.96811 * 74.82450 * 15 14 12 22 22 Cl 1.73596 * 119.93993 * 0.02562 * 21 15 14 23 23 H 1.09004 * 109.47535 * 299.99478 * 1 2 3 24 24 H 1.09008 * 109.47247 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.47615 * 59.99973 * 1 2 3 26 26 H 0.97005 * 120.00461 * 179.97438 * 7 6 4 27 27 H 1.08993 * 109.47456 * 64.78369 * 13 12 2 28 28 H 1.09003 * 109.46919 * 184.77985 * 13 12 2 29 29 H 1.08997 * 109.46949 * 304.77486 * 13 12 2 30 30 H 1.09002 * 109.47309 * 310.26521 * 14 12 2 31 31 H 1.09004 * 109.46913 * 70.26114 * 14 12 2 32 32 H 1.08000 * 120.03610 * 0.02562 * 16 15 14 33 33 H 0.97004 * 119.99956 * 180.26839 * 18 17 16 34 34 H 0.96998 * 120.00475 * 0.27803 * 18 17 16 35 35 H 1.08005 * 120.03135 * 179.70337 * 19 17 16 36 36 H 1.07998 * 119.96589 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6533 -1.5885 1.1312 6 6 1.6993 -0.2395 2.4827 7 7 0.9428 0.8295 2.6034 8 14 2.3226 -1.1197 4.0078 9 1 3.8075 -1.1191 4.0076 10 1 1.8280 -0.4194 5.2204 11 1 1.8280 -2.5200 4.0080 12 7 2.0196 -0.6924 -1.1995 13 6 3.4850 -0.7944 -1.1871 14 6 1.5485 -0.0263 -2.4211 15 6 1.8520 -0.8939 -3.6154 16 6 2.8852 -0.5570 -4.4681 17 6 3.1680 -1.3601 -5.5653 18 7 4.2161 -1.0250 -6.4265 19 6 2.4032 -2.4941 -5.8083 20 6 1.3679 -2.8229 -4.9556 21 6 1.0920 -2.0238 -3.8597 22 17 -0.2107 -2.4397 -2.7903 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 -0.8900 26 1 0.7082 1.1607 3.4845 27 1 3.7984 -1.4242 -0.3546 28 1 3.8265 -1.2344 -2.1241 29 1 3.9174 0.1997 -1.0737 30 1 0.4728 0.1367 -2.3544 31 1 2.0552 0.9327 -2.5305 32 1 3.4756 0.3273 -4.2791 33 1 4.4104 -1.5844 -7.1948 34 1 4.7496 -0.2330 -6.2560 35 1 2.6178 -3.1179 -6.6635 36 1 0.7728 -3.7041 -5.1442 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063085140.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:50 Heat of formation + Delta-G solvation = 24.501051 kcal Electronic energy + Delta-G solvation = -18459.056582 eV Core-core repulsion = 15582.865507 eV Total energy + Delta-G solvation = -2876.191075 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.104 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.47549 -36.89541 -35.91654 -34.17837 -32.84950 -31.17051 -28.92791 -28.42652 -26.68756 -24.59858 -23.32522 -22.29961 -20.93038 -19.25051 -16.98237 -16.80441 -16.17552 -15.89583 -15.19440 -14.59700 -14.09512 -13.89691 -13.59267 -13.38151 -13.04556 -12.46615 -12.28690 -11.85235 -11.73524 -11.66761 -11.18759 -10.97545 -10.91114 -10.67549 -10.54666 -10.23975 -9.98068 -9.91647 -9.85152 -9.69652 -8.86950 -8.62523 -8.33640 -7.36389 -7.06080 -5.94331 -3.98072 1.49159 1.62600 2.82649 3.36597 3.40530 3.44024 3.80017 3.89946 4.47301 4.90777 5.01348 5.25283 5.37097 5.38541 5.58807 5.70860 5.95890 6.07253 6.22951 6.29101 6.31353 6.39283 6.48281 6.71950 6.84825 6.87348 6.96510 7.17132 7.24749 7.42477 7.60420 7.67059 7.81135 7.90553 8.30233 8.40531 8.67906 9.08234 9.66363 11.12410 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.027129 B = 0.005367 C = 0.004957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.866960 B = 5216.282387 C = 5646.668101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.215 3.785 3 H -0.004 1.004 4 C -0.499 4.499 5 H 0.062 0.938 6 C 0.059 3.941 7 N -0.895 5.895 8 Si 0.895 3.105 9 H -0.279 1.279 10 H -0.289 1.289 11 H -0.277 1.277 12 N -0.521 5.521 13 C 0.040 3.960 14 C 0.082 3.918 15 C -0.007 4.007 16 C -0.184 4.184 17 C 0.212 3.788 18 N -0.880 5.880 19 C -0.197 4.197 20 C -0.069 4.069 21 C -0.067 4.067 22 Cl -0.060 7.060 23 H 0.082 0.918 24 H 0.036 0.964 25 H 0.007 0.993 26 H 0.260 0.740 27 H 0.071 0.929 28 H 0.043 0.957 29 H 0.010 0.990 30 H 0.091 0.909 31 H 0.029 0.971 32 H 0.122 0.878 33 H 0.396 0.604 34 H 0.397 0.603 35 H 0.121 0.879 36 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.253 -3.627 -17.094 17.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.109 3.891 3 H 0.013 0.987 4 C -0.538 4.538 5 H 0.080 0.920 6 C -0.142 4.142 7 N -0.534 5.534 8 Si 0.723 3.277 9 H -0.204 1.204 10 H -0.214 1.214 11 H -0.202 1.202 12 N -0.245 5.245 13 C -0.109 4.109 14 C -0.046 4.046 15 C -0.009 4.009 16 C -0.208 4.208 17 C 0.108 3.892 18 N -0.420 5.420 19 C -0.220 4.220 20 C -0.088 4.088 21 C -0.096 4.096 22 Cl -0.031 7.031 23 H 0.101 0.899 24 H 0.056 0.944 25 H 0.026 0.974 26 H 0.070 0.930 27 H 0.090 0.910 28 H 0.061 0.939 29 H 0.029 0.971 30 H 0.109 0.891 31 H 0.047 0.953 32 H 0.140 0.860 33 H 0.223 0.777 34 H 0.225 0.775 35 H 0.139 0.861 36 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 2.818 -4.019 -16.783 17.486 hybrid contribution 0.915 0.435 0.687 1.225 sum 3.733 -3.584 -16.096 16.907 Atomic orbital electron populations 1.21821 0.97604 0.99802 0.99544 1.19242 0.92410 0.91735 0.85686 0.98653 1.21109 1.30823 1.12138 0.89695 0.91965 1.24912 0.95293 0.95097 0.98914 1.69887 1.37031 1.23113 1.23367 0.86607 0.79011 0.79816 0.82224 1.20448 1.21447 1.20247 1.62146 1.09033 1.52218 1.01149 1.22192 0.88916 0.99192 1.00609 1.21160 1.01955 0.92956 0.88574 1.19645 0.92455 0.93791 0.94972 1.20434 1.01452 1.02270 0.96612 1.17744 0.88229 0.93185 0.90007 1.42423 1.36263 1.32441 1.30853 1.20383 0.99638 0.99033 1.02939 1.20739 0.96752 0.98484 0.92847 1.20496 0.96090 0.98117 0.94943 1.98368 1.47022 1.92925 1.64760 0.89914 0.94449 0.97420 0.93045 0.91006 0.93867 0.97124 0.89108 0.95311 0.85962 0.77667 0.77510 0.86065 0.85501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.22 8.76 37.15 0.33 -2.89 16 2 C 0.21 5.48 2.05 -68.87 -0.14 5.34 16 3 H 0.00 -0.11 8.14 -51.93 -0.42 -0.54 16 4 C -0.50 -13.81 7.98 -34.44 -0.27 -14.08 16 5 H 0.06 1.73 6.41 -52.49 -0.34 1.39 16 6 C 0.06 1.64 5.30 -17.82 -0.09 1.54 16 7 N -0.89 -25.75 11.32 55.43 0.63 -25.12 16 8 Si 0.90 21.65 29.54 -169.99 -5.02 16.63 16 9 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 10 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 11 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 12 N -0.52 -11.38 4.49 -237.73 -1.07 -12.45 16 13 C 0.04 0.81 9.04 60.06 0.54 1.35 16 14 C 0.08 1.54 4.24 -4.98 -0.02 1.52 16 15 C -0.01 -0.11 4.44 -104.62 -0.46 -0.57 16 16 C -0.18 -2.59 8.75 -39.38 -0.34 -2.94 16 17 C 0.21 2.56 6.76 -83.76 -0.57 1.99 16 18 N -0.88 -7.41 9.09 32.42 0.29 -7.12 16 19 C -0.20 -2.34 9.90 -39.38 -0.39 -2.73 16 20 C -0.07 -0.92 9.82 -39.57 -0.39 -1.31 16 21 C -0.07 -1.09 6.31 -39.48 -0.25 -1.34 16 22 Cl -0.06 -1.04 27.53 -51.86 -1.43 -2.46 16 23 H 0.08 2.25 6.07 -51.93 -0.32 1.93 16 24 H 0.04 0.93 8.14 -51.92 -0.42 0.50 16 25 H 0.01 0.16 6.19 -51.93 -0.32 -0.16 16 26 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 27 H 0.07 1.55 6.42 -51.93 -0.33 1.22 16 28 H 0.04 0.79 6.45 -51.93 -0.34 0.45 16 29 H 0.01 0.21 8.13 -51.93 -0.42 -0.21 16 30 H 0.09 1.78 5.26 -51.93 -0.27 1.51 16 31 H 0.03 0.53 7.92 -51.93 -0.41 0.12 16 32 H 0.12 1.59 8.00 -52.49 -0.42 1.17 16 33 H 0.40 2.48 8.84 -40.82 -0.36 2.11 16 34 H 0.40 2.80 8.84 -40.82 -0.36 2.44 16 35 H 0.12 1.12 8.06 -52.48 -0.42 0.70 16 36 H 0.13 1.46 8.06 -52.49 -0.42 1.04 16 LS Contribution 305.88 15.07 4.61 4.61 Total: -1.00 -29.82 305.88 -8.77 -38.58 By element: Atomic # 1 Polarization: 6.16 SS G_CDS: -4.72 Total: 1.44 kcal Atomic # 6 Polarization: -12.05 SS G_CDS: -2.07 Total: -14.11 kcal Atomic # 7 Polarization: -44.54 SS G_CDS: -0.15 Total: -44.69 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Atomic # 17 Polarization: -1.04 SS G_CDS: -1.43 Total: -2.46 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -29.82 -8.77 -38.58 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063085140.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.084 kcal (2) G-P(sol) polarization free energy of solvation -29.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.583 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds