Wall clock time and date at job start Mon Mar 30 2020 06:46:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09006 * 109.46767 * 2 1 4 4 C 1.50697 * 109.47308 * 120.00509 * 2 1 3 5 5 H 1.07997 * 120.00002 * 120.00411 * 4 2 1 6 6 C 1.37878 * 119.99893 * 299.99713 * 4 2 1 7 7 N 1.31514 * 119.99954 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00110 * 180.02562 * 6 4 2 9 9 H 1.48494 * 109.47004 * 60.00408 * 8 6 4 10 10 H 1.48502 * 109.46995 * 179.97438 * 8 6 4 11 11 H 1.48501 * 109.46995 * 299.99790 * 8 6 4 12 12 N 1.46903 * 109.47043 * 240.00538 * 2 1 3 13 13 C 1.46900 * 110.99761 * 183.95397 * 12 2 1 14 14 C 1.46898 * 111.00269 * 59.99572 * 12 2 1 15 15 C 1.50698 * 109.47365 * 190.26364 * 14 12 2 16 16 C 1.38132 * 119.96401 * 254.54986 * 15 14 12 17 17 C 1.38885 * 119.93368 * 179.72446 * 16 15 14 18 18 N 1.39734 * 120.06150 * 180.27087 * 17 16 15 19 19 C 1.38921 * 119.87275 * 0.54875 * 17 16 15 20 20 C 1.38091 * 119.94028 * 359.72468 * 19 17 16 21 21 C 1.38351 * 119.96811 * 74.82450 * 15 14 12 22 22 Cl 1.73596 * 119.93993 * 0.02562 * 21 15 14 23 23 H 1.09004 * 109.47535 * 299.99478 * 1 2 3 24 24 H 1.09008 * 109.47247 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.47615 * 59.99973 * 1 2 3 26 26 H 0.97005 * 120.00461 * 179.97438 * 7 6 4 27 27 H 1.08993 * 109.47456 * 64.78369 * 13 12 2 28 28 H 1.09003 * 109.46919 * 184.77985 * 13 12 2 29 29 H 1.08997 * 109.46949 * 304.77486 * 13 12 2 30 30 H 1.09002 * 109.47309 * 310.26521 * 14 12 2 31 31 H 1.09004 * 109.46913 * 70.26114 * 14 12 2 32 32 H 1.08000 * 120.03610 * 0.02562 * 16 15 14 33 33 H 0.97004 * 119.99956 * 180.26839 * 18 17 16 34 34 H 0.96998 * 120.00475 * 0.27803 * 18 17 16 35 35 H 1.08005 * 120.03135 * 179.70337 * 19 17 16 36 36 H 1.07998 * 119.96589 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6533 -1.5885 1.1312 6 6 1.6993 -0.2395 2.4827 7 7 0.9428 0.8295 2.6034 8 14 2.3226 -1.1197 4.0078 9 1 3.8075 -1.1191 4.0076 10 1 1.8280 -0.4194 5.2204 11 1 1.8280 -2.5200 4.0080 12 7 2.0196 -0.6924 -1.1995 13 6 3.4850 -0.7944 -1.1871 14 6 1.5485 -0.0263 -2.4211 15 6 1.8520 -0.8939 -3.6154 16 6 2.8852 -0.5570 -4.4681 17 6 3.1680 -1.3601 -5.5653 18 7 4.2161 -1.0250 -6.4265 19 6 2.4032 -2.4941 -5.8083 20 6 1.3679 -2.8229 -4.9556 21 6 1.0920 -2.0238 -3.8597 22 17 -0.2107 -2.4397 -2.7903 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 -0.8900 26 1 0.7082 1.1607 3.4845 27 1 3.7984 -1.4242 -0.3546 28 1 3.8265 -1.2344 -2.1241 29 1 3.9174 0.1997 -1.0737 30 1 0.4728 0.1367 -2.3544 31 1 2.0552 0.9327 -2.5305 32 1 3.4756 0.3273 -4.2791 33 1 4.4104 -1.5844 -7.1948 34 1 4.7496 -0.2330 -6.2560 35 1 2.6178 -3.1179 -6.6635 36 1 0.7728 -3.7041 -5.1442 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063085140.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:50 Heat of formation + Delta-G solvation = 5.202239 kcal Electronic energy + Delta-G solvation = -18459.893441 eV Core-core repulsion = 15582.865507 eV Total energy + Delta-G solvation = -2877.027935 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.104 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.59228 -38.53067 -37.14063 -35.37295 -34.58831 -32.55505 -30.81883 -29.48445 -28.23358 -26.53700 -24.97131 -23.35701 -22.29217 -21.00054 -18.40218 -17.88840 -17.65114 -17.12957 -16.88230 -16.00407 -15.76768 -15.28603 -15.07464 -14.68554 -14.25446 -14.12954 -13.88070 -13.43557 -13.05074 -12.93432 -12.90597 -12.69412 -12.60810 -12.38557 -12.23543 -12.04503 -11.92703 -11.69401 -11.24639 -10.96336 -10.81857 -10.48496 -9.76445 -8.84776 -8.31090 -8.07466 -6.18721 0.42264 0.55909 1.43138 1.45336 1.52604 1.64525 2.44465 2.81682 3.02889 3.20621 3.54717 3.87484 3.95928 4.30038 4.47750 4.52040 4.62332 4.68769 4.75399 4.84629 4.95343 5.06461 5.09668 5.12730 5.28067 5.32631 5.33299 5.54641 5.61561 5.76488 5.81534 5.84656 6.30080 6.45194 6.59536 6.77324 6.95742 7.05238 7.49887 8.98144 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.027129 B = 0.005367 C = 0.004957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.866960 B = 5216.282387 C = 5646.668101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.221 3.779 3 H -0.039 1.039 4 C -0.515 4.515 5 H 0.058 0.942 6 C 0.012 3.988 7 N -0.921 5.921 8 Si 0.958 3.042 9 H -0.271 1.271 10 H -0.284 1.284 11 H -0.274 1.274 12 N -0.525 5.525 13 C 0.047 3.953 14 C 0.087 3.913 15 C -0.025 4.025 16 C -0.193 4.193 17 C 0.222 3.778 18 N -0.863 5.863 19 C -0.189 4.189 20 C -0.067 4.067 21 C -0.091 4.091 22 Cl -0.084 7.084 23 H 0.057 0.943 24 H 0.030 0.970 25 H 0.025 0.975 26 H 0.261 0.739 27 H 0.055 0.945 28 H 0.067 0.933 29 H 0.006 0.994 30 H 0.078 0.922 31 H 0.028 0.972 32 H 0.129 0.871 33 H 0.410 0.590 34 H 0.406 0.594 35 H 0.156 0.844 36 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.682 -4.799 -19.065 20.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.114 3.886 3 H -0.021 1.021 4 C -0.553 4.553 5 H 0.076 0.924 6 C -0.187 4.187 7 N -0.561 5.561 8 Si 0.784 3.216 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.199 1.199 12 N -0.249 5.249 13 C -0.101 4.101 14 C -0.040 4.040 15 C -0.027 4.027 16 C -0.217 4.217 17 C 0.115 3.885 18 N -0.403 5.403 19 C -0.212 4.212 20 C -0.087 4.087 21 C -0.120 4.120 22 Cl -0.056 7.056 23 H 0.075 0.925 24 H 0.049 0.951 25 H 0.044 0.956 26 H 0.070 0.930 27 H 0.074 0.926 28 H 0.086 0.914 29 H 0.024 0.976 30 H 0.096 0.904 31 H 0.047 0.953 32 H 0.147 0.853 33 H 0.240 0.760 34 H 0.235 0.765 35 H 0.173 0.827 36 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 4.283 -5.191 -18.803 19.971 hybrid contribution 0.546 0.814 1.124 1.491 sum 4.828 -4.377 -17.679 18.842 Atomic orbital electron populations 1.21589 0.97316 0.99100 0.99117 1.19017 0.92564 0.89935 0.87059 1.02141 1.21371 1.30940 1.12126 0.90890 0.92435 1.25680 0.95441 0.95768 1.01773 1.70019 1.37834 1.24250 1.23970 0.85616 0.78719 0.78642 0.78664 1.19659 1.20970 1.19918 1.62047 1.09854 1.51959 1.01025 1.22115 0.88077 0.98729 1.01175 1.21063 1.00983 0.93507 0.88483 1.19418 0.94293 0.94190 0.94832 1.20485 1.01042 1.03042 0.97139 1.17798 0.88599 0.92596 0.89506 1.42411 1.34825 1.32750 1.30334 1.20759 0.98334 0.98929 1.03193 1.20981 0.97226 0.98515 0.91948 1.20654 0.96251 0.99136 0.95988 1.98352 1.48303 1.93092 1.65818 0.92451 0.95088 0.95638 0.93030 0.92624 0.91407 0.97582 0.90428 0.95337 0.85287 0.75955 0.76471 0.82675 0.83744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.79 8.76 71.98 0.63 -5.16 16 2 C 0.22 11.63 2.05 44.17 0.09 11.72 16 3 H -0.04 -2.27 8.14 -2.38 -0.02 -2.29 16 4 C -0.51 -29.06 7.98 25.60 0.20 -28.86 16 5 H 0.06 3.24 6.41 -2.91 -0.02 3.22 16 6 C 0.01 0.66 5.30 84.65 0.45 1.11 16 7 N -0.92 -54.12 11.32 21.45 0.24 -53.88 16 8 Si 0.96 44.72 29.54 68.60 2.03 46.75 16 9 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 10 H -0.28 -12.97 7.11 99.48 0.71 -12.27 16 11 H -0.27 -12.58 7.11 99.48 0.71 -11.88 16 12 N -0.52 -23.28 4.49 -906.05 -4.07 -27.36 16 13 C 0.05 1.94 9.04 127.69 1.15 3.09 16 14 C 0.09 3.34 4.24 85.56 0.36 3.70 16 15 C -0.03 -0.82 4.44 -19.86 -0.09 -0.90 16 16 C -0.19 -5.04 8.75 22.40 0.20 -4.84 16 17 C 0.22 4.55 6.76 38.20 0.26 4.81 16 18 N -0.86 -10.94 9.09 -51.34 -0.47 -11.40 16 19 C -0.19 -3.74 9.90 22.40 0.22 -3.52 16 20 C -0.07 -1.64 9.82 22.27 0.22 -1.42 16 21 C -0.09 -2.85 6.31 22.34 0.14 -2.71 16 22 Cl -0.08 -2.95 27.53 -2.72 -0.07 -3.02 16 23 H 0.06 3.22 6.07 -2.38 -0.01 3.21 16 24 H 0.03 1.57 8.14 -2.38 -0.02 1.55 16 25 H 0.02 1.16 6.19 -2.39 -0.01 1.15 16 26 H 0.26 14.61 8.31 -92.70 -0.77 13.83 16 27 H 0.05 2.42 6.42 -2.39 -0.02 2.41 16 28 H 0.07 2.41 6.45 -2.39 -0.02 2.39 16 29 H 0.01 0.23 8.13 -2.39 -0.02 0.22 16 30 H 0.08 3.12 5.26 -2.39 -0.01 3.11 16 31 H 0.03 1.07 7.92 -2.38 -0.02 1.05 16 32 H 0.13 3.10 8.00 -2.91 -0.02 3.08 16 33 H 0.41 3.19 8.84 -92.70 -0.82 2.37 16 34 H 0.41 4.17 8.84 -92.71 -0.82 3.35 16 35 H 0.16 2.02 8.06 -2.91 -0.02 1.99 16 36 H 0.14 2.93 8.06 -2.91 -0.02 2.91 16 Total: -1.00 -65.02 305.88 0.97 -64.05 By element: Atomic # 1 Polarization: 8.37 SS G_CDS: -0.53 Total: 7.85 kcal Atomic # 6 Polarization: -26.82 SS G_CDS: 3.84 Total: -22.98 kcal Atomic # 7 Polarization: -88.35 SS G_CDS: -4.30 Total: -92.64 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.75 kcal Atomic # 17 Polarization: -2.95 SS G_CDS: -0.07 Total: -3.02 kcal Total: -65.02 0.97 -64.05 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063085140.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.255 kcal (2) G-P(sol) polarization free energy of solvation -65.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.053 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds