Wall clock time and date at job start Mon Mar 30 2020 06:46:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09001 * 109.47496 * 2 1 4 4 C 1.50701 * 109.47222 * 239.99692 * 2 1 3 5 5 H 1.08002 * 119.99744 * 331.20827 * 4 2 1 6 6 C 1.37872 * 120.00000 * 151.21265 * 4 2 1 7 7 N 1.31522 * 119.99751 * 185.29150 * 6 4 2 8 8 Si 1.86799 * 120.00406 * 5.28764 * 6 4 2 9 9 H 1.48500 * 109.47138 * 86.79827 * 8 6 4 10 10 H 1.48495 * 109.47322 * 206.80422 * 8 6 4 11 11 H 1.48501 * 109.46945 * 326.80082 * 8 6 4 12 12 N 1.46902 * 109.47177 * 119.99704 * 2 1 3 13 13 C 1.46900 * 111.00167 * 58.95391 * 12 2 1 14 14 C 1.46903 * 111.00058 * 294.99885 * 12 2 1 15 15 C 1.50703 * 109.47160 * 199.75161 * 14 12 2 16 16 C 1.38133 * 119.96799 * 259.21598 * 15 14 12 17 17 C 1.38873 * 119.93864 * 179.72851 * 16 15 14 18 18 N 1.39744 * 120.06351 * 180.27241 * 17 16 15 19 19 C 1.38921 * 119.87231 * 0.54269 * 17 16 15 20 20 C 1.38080 * 119.94165 * 359.72901 * 19 17 16 21 21 C 1.38351 * 119.97017 * 79.48994 * 15 14 12 22 22 Cl 1.73597 * 119.94105 * 0.02562 * 21 15 14 23 23 H 1.09000 * 109.47215 * 174.60908 * 1 2 3 24 24 H 1.09006 * 109.46844 * 294.59973 * 1 2 3 25 25 H 1.08997 * 109.47693 * 54.60049 * 1 2 3 26 26 H 0.97005 * 119.99533 * 179.97438 * 7 6 4 27 27 H 1.08999 * 109.47165 * 289.33442 * 13 12 2 28 28 H 1.09002 * 109.46806 * 49.32931 * 13 12 2 29 29 H 1.09002 * 109.47271 * 169.33407 * 13 12 2 30 30 H 1.09003 * 109.47230 * 79.75199 * 14 12 2 31 31 H 1.09002 * 109.46863 * 319.74774 * 14 12 2 32 32 H 1.08007 * 120.02800 * 0.02562 * 16 15 14 33 33 H 0.96996 * 119.99821 * 180.26668 * 18 17 16 34 34 H 0.97002 * 119.99591 * 0.27568 * 18 17 16 35 35 H 1.08005 * 120.02700 * 179.70873 * 19 17 16 36 36 H 1.08004 * 119.97380 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 1.4395 -1.4918 -1.6827 6 6 3.2487 -0.3631 -1.7787 7 7 3.6400 -0.9085 -2.9097 8 14 4.3410 0.8823 -0.9153 9 1 5.1931 0.1860 0.0819 10 1 5.2034 1.5616 -1.9152 11 1 3.4946 1.8892 -0.2262 12 7 2.0196 -0.6924 1.1995 13 6 1.5283 -2.0760 1.2461 14 6 1.6487 0.0393 2.4181 15 6 2.5392 -0.3931 3.5544 16 6 2.0752 -1.2986 4.4886 17 6 2.8983 -1.7009 5.5322 18 7 2.4335 -2.6212 6.4756 19 6 4.1827 -1.1825 5.6398 20 6 4.6394 -0.2734 4.7063 21 6 3.8188 0.1216 3.6641 22 17 4.3960 1.2653 2.4926 23 1 -0.3633 -1.0231 -0.0965 24 1 -0.3633 0.4278 0.9345 25 1 -0.3634 0.5953 -0.8376 26 1 4.4957 -0.6638 -3.2956 27 1 0.4583 -2.0749 1.4541 28 1 1.7113 -2.5591 0.2863 29 1 2.0507 -2.6208 2.0326 30 1 0.6098 -0.1753 2.6688 31 1 1.7683 1.1096 2.2498 32 1 1.0748 -1.6970 4.4047 33 1 3.0079 -2.8986 7.2063 34 1 1.5366 -2.9826 6.3995 35 1 4.8233 -1.4901 6.4532 36 1 5.6376 0.1303 4.7897 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063085141.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:53 Heat of formation + Delta-G solvation = 23.820964 kcal Electronic energy + Delta-G solvation = -18789.491950 eV Core-core repulsion = 15913.271384 eV Total energy + Delta-G solvation = -2876.220566 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.104 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.46311 -37.16565 -36.01054 -34.20016 -32.59668 -31.41163 -29.21190 -28.35621 -26.46781 -25.40063 -23.52077 -22.29081 -20.82918 -19.00868 -17.03994 -16.90203 -16.58981 -16.01930 -15.00675 -14.66190 -14.21808 -13.86011 -13.47472 -13.32045 -13.16085 -12.70389 -12.55740 -12.17311 -11.83881 -11.74178 -11.42391 -11.15585 -11.07825 -10.77754 -10.67776 -10.48457 -10.08605 -9.74438 -9.71795 -9.46747 -8.95513 -8.67462 -8.43491 -7.35402 -7.14593 -5.99562 -4.03461 1.50569 1.63031 2.76668 3.51363 3.57114 3.68111 3.80458 3.90789 4.61774 4.87348 5.00800 5.07972 5.36749 5.53663 5.61337 5.72869 5.91674 6.03390 6.17388 6.23004 6.30009 6.31248 6.33938 6.41740 6.43315 6.61945 6.73036 6.84716 6.90180 7.05702 7.23206 7.43269 7.67855 7.72250 8.14667 8.35376 8.65073 9.02312 9.65697 11.10888 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.021758 B = 0.007645 C = 0.006418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.597047 B = 3661.615165 C = 4361.474168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.165 3.835 3 H 0.054 0.946 4 C -0.499 4.499 5 H 0.070 0.930 6 C 0.084 3.916 7 N -0.899 5.899 8 Si 0.884 3.116 9 H -0.256 1.256 10 H -0.306 1.306 11 H -0.263 1.263 12 N -0.521 5.521 13 C 0.039 3.961 14 C 0.079 3.921 15 C -0.005 4.005 16 C -0.182 4.182 17 C 0.213 3.787 18 N -0.880 5.880 19 C -0.196 4.196 20 C -0.067 4.067 21 C -0.071 4.071 22 Cl -0.067 7.067 23 H 0.045 0.955 24 H 0.026 0.974 25 H 0.050 0.950 26 H 0.263 0.737 27 H 0.007 0.993 28 H 0.081 0.919 29 H 0.042 0.958 30 H 0.035 0.965 31 H 0.077 0.923 32 H 0.122 0.878 33 H 0.396 0.604 34 H 0.397 0.603 35 H 0.122 0.878 36 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.554 -0.115 18.570 18.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.061 3.939 3 H 0.072 0.928 4 C -0.537 4.537 5 H 0.088 0.912 6 C -0.120 4.120 7 N -0.537 5.537 8 Si 0.713 3.287 9 H -0.181 1.181 10 H -0.234 1.234 11 H -0.188 1.188 12 N -0.245 5.245 13 C -0.110 4.110 14 C -0.049 4.049 15 C -0.007 4.007 16 C -0.206 4.206 17 C 0.109 3.891 18 N -0.419 5.419 19 C -0.219 4.219 20 C -0.087 4.087 21 C -0.100 4.100 22 Cl -0.038 7.038 23 H 0.065 0.935 24 H 0.045 0.955 25 H 0.069 0.931 26 H 0.072 0.928 27 H 0.025 0.975 28 H 0.099 0.901 29 H 0.061 0.939 30 H 0.053 0.947 31 H 0.096 0.904 32 H 0.140 0.860 33 H 0.223 0.777 34 H 0.225 0.775 35 H 0.140 0.860 36 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -0.841 0.000 18.249 18.269 hybrid contribution -0.248 0.321 0.614 0.736 sum -1.090 0.322 18.863 18.897 Atomic orbital electron populations 1.22355 1.00390 1.00647 0.98983 1.20043 0.89702 0.95863 0.88325 0.92850 1.20811 1.04517 1.21214 1.07150 0.91188 1.25025 0.97303 0.95807 0.93831 1.69942 1.21442 1.43969 1.18310 0.86733 0.80923 0.81975 0.79093 1.18109 1.23415 1.18834 1.62893 1.59517 1.01838 1.00249 1.22153 0.95222 0.91152 1.02423 1.21156 0.94316 0.99386 0.90019 1.19632 0.93080 0.93497 0.94491 1.20374 1.00422 1.03196 0.96565 1.17744 0.92655 0.89422 0.89275 1.42415 1.19045 1.49764 1.30724 1.20368 0.95389 1.03515 1.02668 1.20730 0.98925 0.96292 0.92724 1.20548 0.95052 1.00108 0.94316 1.98375 1.88559 1.59271 1.57577 0.93547 0.95500 0.93126 0.92768 0.97469 0.90058 0.93936 0.94651 0.90430 0.85968 0.77662 0.77531 0.86039 0.85526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.35 8.47 37.15 0.31 -3.04 16 2 C 0.17 3.88 1.70 -68.87 -0.12 3.76 16 3 H 0.05 1.32 5.28 -51.93 -0.27 1.05 16 4 C -0.50 -13.86 7.60 -34.44 -0.26 -14.12 16 5 H 0.07 2.10 7.97 -52.49 -0.42 1.69 16 6 C 0.08 2.45 5.47 -17.82 -0.10 2.36 16 7 N -0.90 -27.79 13.96 55.43 0.77 -27.02 16 8 Si 0.88 22.91 25.19 -169.99 -4.28 18.63 16 9 H -0.26 -6.61 6.65 56.52 0.38 -6.24 16 10 H -0.31 -8.05 7.11 56.52 0.40 -7.65 16 11 H -0.26 -6.51 6.03 56.52 0.34 -6.17 16 12 N -0.52 -11.14 4.45 -237.72 -1.06 -12.20 16 13 C 0.04 0.78 8.51 60.06 0.51 1.29 16 14 C 0.08 1.45 3.69 -4.97 -0.02 1.43 16 15 C 0.00 -0.08 4.92 -104.62 -0.51 -0.59 16 16 C -0.18 -2.59 9.08 -39.38 -0.36 -2.95 16 17 C 0.21 2.64 6.76 -83.76 -0.57 2.08 16 18 N -0.88 -7.59 9.09 32.42 0.29 -7.30 16 19 C -0.20 -2.45 9.90 -39.39 -0.39 -2.84 16 20 C -0.07 -0.97 9.82 -39.58 -0.39 -1.36 16 21 C -0.07 -1.22 6.31 -39.48 -0.25 -1.47 16 22 Cl -0.07 -1.27 24.65 -51.86 -1.28 -2.55 16 23 H 0.05 0.93 6.94 -51.93 -0.36 0.57 16 24 H 0.03 0.48 6.75 -51.93 -0.35 0.13 16 25 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 26 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 27 H 0.01 0.13 6.83 -51.93 -0.35 -0.23 16 28 H 0.08 1.83 6.73 -51.93 -0.35 1.48 16 29 H 0.04 0.79 7.44 -51.93 -0.39 0.41 16 30 H 0.04 0.60 6.95 -51.93 -0.36 0.23 16 31 H 0.08 1.46 7.04 -51.93 -0.37 1.10 16 32 H 0.12 1.56 8.03 -52.48 -0.42 1.14 16 33 H 0.40 2.58 8.84 -40.82 -0.36 2.22 16 34 H 0.40 2.83 8.84 -40.82 -0.36 2.47 16 35 H 0.12 1.19 8.06 -52.48 -0.42 0.77 16 36 H 0.13 1.59 8.06 -52.48 -0.42 1.17 16 LS Contribution 299.57 15.07 4.51 4.51 Total: -1.00 -31.28 299.57 -8.02 -39.30 By element: Atomic # 1 Polarization: 6.95 SS G_CDS: -4.85 Total: 2.09 kcal Atomic # 6 Polarization: -13.33 SS G_CDS: -2.13 Total: -15.47 kcal Atomic # 7 Polarization: -46.52 SS G_CDS: 0.01 Total: -46.52 kcal Atomic # 14 Polarization: 22.91 SS G_CDS: -4.28 Total: 18.63 kcal Atomic # 17 Polarization: -1.27 SS G_CDS: -1.28 Total: -2.55 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -31.28 -8.02 -39.30 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063085141.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.121 kcal (2) G-P(sol) polarization free energy of solvation -31.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.300 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds