Wall clock time and date at job start Mon Mar 30 2020 06:46:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09001 * 109.47496 * 2 1 4 4 C 1.50701 * 109.47222 * 239.99692 * 2 1 3 5 5 H 1.08002 * 119.99744 * 331.20827 * 4 2 1 6 6 C 1.37872 * 120.00000 * 151.21265 * 4 2 1 7 7 N 1.31522 * 119.99751 * 185.29150 * 6 4 2 8 8 Si 1.86799 * 120.00406 * 5.28764 * 6 4 2 9 9 H 1.48500 * 109.47138 * 86.79827 * 8 6 4 10 10 H 1.48495 * 109.47322 * 206.80422 * 8 6 4 11 11 H 1.48501 * 109.46945 * 326.80082 * 8 6 4 12 12 N 1.46902 * 109.47177 * 119.99704 * 2 1 3 13 13 C 1.46900 * 111.00167 * 58.95391 * 12 2 1 14 14 C 1.46903 * 111.00058 * 294.99885 * 12 2 1 15 15 C 1.50703 * 109.47160 * 199.75161 * 14 12 2 16 16 C 1.38133 * 119.96799 * 259.21598 * 15 14 12 17 17 C 1.38873 * 119.93864 * 179.72851 * 16 15 14 18 18 N 1.39744 * 120.06351 * 180.27241 * 17 16 15 19 19 C 1.38921 * 119.87231 * 0.54269 * 17 16 15 20 20 C 1.38080 * 119.94165 * 359.72901 * 19 17 16 21 21 C 1.38351 * 119.97017 * 79.48994 * 15 14 12 22 22 Cl 1.73597 * 119.94105 * 0.02562 * 21 15 14 23 23 H 1.09000 * 109.47215 * 174.60908 * 1 2 3 24 24 H 1.09006 * 109.46844 * 294.59973 * 1 2 3 25 25 H 1.08997 * 109.47693 * 54.60049 * 1 2 3 26 26 H 0.97005 * 119.99533 * 179.97438 * 7 6 4 27 27 H 1.08999 * 109.47165 * 289.33442 * 13 12 2 28 28 H 1.09002 * 109.46806 * 49.32931 * 13 12 2 29 29 H 1.09002 * 109.47271 * 169.33407 * 13 12 2 30 30 H 1.09003 * 109.47230 * 79.75199 * 14 12 2 31 31 H 1.09002 * 109.46863 * 319.74774 * 14 12 2 32 32 H 1.08007 * 120.02800 * 0.02562 * 16 15 14 33 33 H 0.96996 * 119.99821 * 180.26668 * 18 17 16 34 34 H 0.97002 * 119.99591 * 0.27568 * 18 17 16 35 35 H 1.08005 * 120.02700 * 179.70873 * 19 17 16 36 36 H 1.08004 * 119.97380 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 1.4395 -1.4918 -1.6827 6 6 3.2487 -0.3631 -1.7787 7 7 3.6400 -0.9085 -2.9097 8 14 4.3410 0.8823 -0.9153 9 1 5.1931 0.1860 0.0819 10 1 5.2034 1.5616 -1.9152 11 1 3.4946 1.8892 -0.2262 12 7 2.0196 -0.6924 1.1995 13 6 1.5283 -2.0760 1.2461 14 6 1.6487 0.0393 2.4181 15 6 2.5392 -0.3931 3.5544 16 6 2.0752 -1.2986 4.4886 17 6 2.8983 -1.7009 5.5322 18 7 2.4335 -2.6212 6.4756 19 6 4.1827 -1.1825 5.6398 20 6 4.6394 -0.2734 4.7063 21 6 3.8188 0.1216 3.6641 22 17 4.3960 1.2653 2.4926 23 1 -0.3633 -1.0231 -0.0965 24 1 -0.3633 0.4278 0.9345 25 1 -0.3634 0.5953 -0.8376 26 1 4.4957 -0.6638 -3.2956 27 1 0.4583 -2.0749 1.4541 28 1 1.7113 -2.5591 0.2863 29 1 2.0507 -2.6208 2.0326 30 1 0.6098 -0.1753 2.6688 31 1 1.7683 1.1096 2.2498 32 1 1.0748 -1.6970 4.4047 33 1 3.0079 -2.8986 7.2063 34 1 1.5366 -2.9826 6.3995 35 1 4.8233 -1.4901 6.4532 36 1 5.6376 0.1303 4.7897 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063085141.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:53 Heat of formation + Delta-G solvation = 1.559778 kcal Electronic energy + Delta-G solvation = -18790.457267 eV Core-core repulsion = 15913.271384 eV Total energy + Delta-G solvation = -2877.185883 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.104 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.58887 -38.74716 -37.28361 -35.29945 -34.49341 -32.89079 -30.80973 -29.41727 -27.91030 -27.33096 -25.09190 -23.36994 -22.10418 -20.76655 -18.98096 -17.88918 -17.74756 -17.13019 -16.64701 -16.18240 -15.80225 -15.22619 -14.93291 -14.71167 -14.63748 -14.34884 -14.03500 -13.63022 -13.29436 -13.16135 -12.95146 -12.72322 -12.58096 -12.42998 -12.20344 -12.13504 -11.77308 -11.45534 -11.38019 -10.99302 -10.92280 -10.63047 -9.78307 -8.76888 -8.33156 -8.24141 -6.30119 0.42554 0.53630 1.39897 1.42036 1.50427 1.68806 2.45959 2.76717 3.02713 3.08467 3.72685 3.89888 3.95726 4.29631 4.47554 4.48674 4.52441 4.59772 4.71730 4.76028 4.77513 4.87259 4.94564 5.07207 5.19168 5.31010 5.31353 5.37685 5.44467 5.59909 5.69603 5.81245 6.17780 6.58206 6.59416 6.69488 6.86637 7.05351 7.41492 8.89081 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.021758 B = 0.007645 C = 0.006418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.597047 B = 3661.615165 C = 4361.474168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.170 3.830 3 H 0.043 0.957 4 C -0.490 4.490 5 H 0.035 0.965 6 C 0.031 3.969 7 N -0.947 5.947 8 Si 0.939 3.061 9 H -0.256 1.256 10 H -0.313 1.313 11 H -0.248 1.248 12 N -0.537 5.537 13 C 0.049 3.951 14 C 0.086 3.914 15 C -0.024 4.024 16 C -0.188 4.188 17 C 0.222 3.778 18 N -0.862 5.862 19 C -0.192 4.192 20 C -0.071 4.071 21 C -0.099 4.099 22 Cl -0.098 7.098 23 H 0.045 0.955 24 H 0.056 0.944 25 H 0.047 0.953 26 H 0.262 0.738 27 H 0.028 0.972 28 H 0.046 0.954 29 H 0.056 0.944 30 H 0.054 0.946 31 H 0.067 0.933 32 H 0.137 0.863 33 H 0.409 0.591 34 H 0.407 0.593 35 H 0.153 0.847 36 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.125 -0.489 22.227 22.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.064 3.936 3 H 0.061 0.939 4 C -0.528 4.528 5 H 0.054 0.946 6 C -0.168 4.168 7 N -0.588 5.588 8 Si 0.766 3.234 9 H -0.181 1.181 10 H -0.242 1.242 11 H -0.173 1.173 12 N -0.261 5.261 13 C -0.099 4.099 14 C -0.042 4.042 15 C -0.026 4.026 16 C -0.211 4.211 17 C 0.115 3.885 18 N -0.402 5.402 19 C -0.214 4.214 20 C -0.090 4.090 21 C -0.128 4.128 22 Cl -0.069 7.069 23 H 0.064 0.936 24 H 0.075 0.925 25 H 0.066 0.934 26 H 0.071 0.929 27 H 0.046 0.954 28 H 0.065 0.935 29 H 0.075 0.925 30 H 0.072 0.928 31 H 0.086 0.914 32 H 0.155 0.845 33 H 0.240 0.760 34 H 0.237 0.763 35 H 0.171 0.829 36 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -1.443 -0.399 21.967 22.018 hybrid contribution -0.158 0.303 -0.340 0.482 sum -1.602 -0.097 21.627 21.687 Atomic orbital electron populations 1.22228 0.97991 1.00882 1.00523 1.19824 0.91560 0.94583 0.87633 0.93949 1.21051 1.03543 1.19725 1.08524 0.94649 1.25716 0.98836 0.97807 0.94407 1.70064 1.22144 1.46372 1.20192 0.85875 0.79383 0.80361 0.77766 1.18075 1.24192 1.17258 1.62510 1.60313 1.02450 1.00870 1.22029 0.96675 0.90254 1.00952 1.21080 0.95739 0.98378 0.88968 1.19542 0.92960 0.95100 0.94993 1.20495 1.01374 1.02691 0.96560 1.17826 0.92365 0.89194 0.89100 1.42404 1.19772 1.48126 1.29901 1.20717 0.95792 1.02254 1.02686 1.20950 0.99283 0.96492 0.92286 1.20736 0.95982 1.01052 0.95033 1.98348 1.88895 1.60532 1.59157 0.93614 0.92515 0.93359 0.92931 0.95383 0.93512 0.92501 0.92807 0.91417 0.84492 0.76037 0.76329 0.82893 0.84279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.17 8.47 71.98 0.61 -5.56 16 2 C 0.17 7.90 1.70 44.17 0.08 7.97 16 3 H 0.04 2.07 5.28 -2.39 -0.01 2.06 16 4 C -0.49 -27.91 7.60 25.60 0.19 -27.71 16 5 H 0.04 2.21 7.97 -2.91 -0.02 2.19 16 6 C 0.03 1.85 5.47 84.65 0.46 2.31 16 7 N -0.95 -60.71 13.96 21.45 0.30 -60.41 16 8 Si 0.94 48.56 25.19 68.60 1.73 50.29 16 9 H -0.26 -13.11 6.65 99.48 0.66 -12.45 16 10 H -0.31 -16.41 7.11 99.48 0.71 -15.70 16 11 H -0.25 -12.06 6.03 99.48 0.60 -11.46 16 12 N -0.54 -22.38 4.45 -906.02 -4.04 -26.42 16 13 C 0.05 1.90 8.51 127.69 1.09 2.99 16 14 C 0.09 2.96 3.69 85.56 0.32 3.27 16 15 C -0.02 -0.75 4.92 -19.86 -0.10 -0.85 16 16 C -0.19 -4.67 9.08 22.40 0.20 -4.47 16 17 C 0.22 4.56 6.76 38.20 0.26 4.82 16 18 N -0.86 -10.71 9.09 -51.34 -0.47 -11.18 16 19 C -0.19 -4.00 9.90 22.40 0.22 -3.78 16 20 C -0.07 -1.85 9.82 22.27 0.22 -1.64 16 21 C -0.10 -3.23 6.31 22.34 0.14 -3.09 16 22 Cl -0.10 -3.66 24.65 -2.72 -0.07 -3.73 16 23 H 0.04 1.78 6.94 -2.39 -0.02 1.76 16 24 H 0.06 1.88 6.75 -2.38 -0.02 1.86 16 25 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 26 H 0.26 15.96 8.31 -92.70 -0.77 15.19 16 27 H 0.03 0.95 6.83 -2.39 -0.02 0.94 16 28 H 0.05 2.12 6.73 -2.39 -0.02 2.10 16 29 H 0.06 2.02 7.44 -2.39 -0.02 2.00 16 30 H 0.05 1.63 6.95 -2.39 -0.02 1.62 16 31 H 0.07 2.45 7.04 -2.39 -0.02 2.44 16 32 H 0.14 2.93 8.03 -2.91 -0.02 2.90 16 33 H 0.41 3.24 8.84 -92.71 -0.82 2.43 16 34 H 0.41 3.86 8.84 -92.71 -0.82 3.04 16 35 H 0.15 2.20 8.06 -2.91 -0.02 2.18 16 36 H 0.14 3.18 8.06 -2.91 -0.02 3.16 16 Total: -1.00 -69.52 299.57 0.46 -69.06 By element: Atomic # 1 Polarization: 8.81 SS G_CDS: -0.68 Total: 8.12 kcal Atomic # 6 Polarization: -29.42 SS G_CDS: 3.69 Total: -25.73 kcal Atomic # 7 Polarization: -93.80 SS G_CDS: -4.20 Total: -98.01 kcal Atomic # 14 Polarization: 48.56 SS G_CDS: 1.73 Total: 50.29 kcal Atomic # 17 Polarization: -3.66 SS G_CDS: -0.07 Total: -3.73 kcal Total: -69.52 0.46 -69.06 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063085141.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.618 kcal (2) G-P(sol) polarization free energy of solvation -69.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.058 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds