Wall clock time and date at job start Mon Mar 30 2020 06:47:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.47002 * 2 1 4 4 C 1.50697 * 109.47239 * 119.99930 * 2 1 3 5 5 H 1.08002 * 119.99362 * 119.99715 * 4 2 1 6 6 C 1.37867 * 120.00258 * 300.00370 * 4 2 1 7 7 N 1.31511 * 120.00203 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 120.00057 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47094 * 89.99954 * 8 6 4 10 10 H 1.48499 * 109.46907 * 209.99714 * 8 6 4 11 11 H 1.48495 * 109.46933 * 330.00015 * 8 6 4 12 12 N 1.46898 * 109.47006 * 240.00218 * 2 1 3 13 13 C 1.46898 * 111.00075 * 183.94996 * 12 2 1 14 14 C 1.46902 * 111.00157 * 60.00147 * 12 2 1 15 15 C 1.50694 * 109.47272 * 190.00074 * 14 12 2 16 16 C 1.38140 * 120.02425 * 259.99837 * 15 14 12 17 17 C 1.38236 * 120.08799 * 179.97438 * 16 15 14 18 18 C 1.38422 * 120.14104 * 359.97438 * 17 16 15 19 19 Cl 1.73604 * 119.98028 * 180.02562 * 18 17 16 20 20 C 1.38198 * 120.04628 * 0.04364 * 18 17 16 21 21 C 1.38898 * 120.02995 * 79.72115 * 15 14 12 22 22 N 1.39679 * 120.06235 * 0.02562 * 21 15 14 23 23 H 1.09000 * 109.47050 * 299.99734 * 1 2 3 24 24 H 1.09001 * 109.46801 * 59.99846 * 1 2 3 25 25 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 26 26 H 0.97006 * 120.00645 * 180.02562 * 7 6 4 27 27 H 1.09002 * 109.46960 * 59.99654 * 13 12 2 28 28 H 1.08997 * 109.47651 * 180.02562 * 13 12 2 29 29 H 1.09002 * 109.47061 * 300.00315 * 13 12 2 30 30 H 1.09010 * 109.47110 * 309.99896 * 14 12 2 31 31 H 1.08995 * 109.47447 * 69.99340 * 14 12 2 32 32 H 1.08000 * 119.95260 * 0.02562 * 16 15 14 33 33 H 1.08003 * 119.92903 * 180.02562 * 17 16 15 34 34 H 1.08007 * 120.04779 * 180.02562 * 20 18 17 35 35 H 0.96991 * 120.00075 * 359.97438 * 22 21 15 36 36 H 0.96998 * 119.99502 * 180.02562 * 22 21 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1312 6 6 1.6993 -0.2394 2.4826 7 7 0.9436 0.8301 2.6034 8 14 2.3215 -1.1205 4.0079 9 1 3.6298 -0.5460 4.4123 10 1 1.3433 -0.9494 5.1119 11 1 2.4860 -2.5663 3.7118 12 7 2.0197 -0.6924 -1.1995 13 6 3.4851 -0.7944 -1.1871 14 6 1.5487 -0.0263 -2.4211 15 6 1.8579 -0.8909 -3.6159 16 6 2.9594 -0.6147 -4.4025 17 6 3.2446 -1.4074 -5.4986 18 6 2.4283 -2.4806 -5.8115 19 17 2.7908 -3.4737 -7.1885 20 6 1.3247 -2.7619 -5.0287 21 6 1.0390 -1.9698 -3.9238 22 7 -0.0724 -2.2544 -3.1271 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 0.7095 1.1617 3.4844 27 1 3.8030 -1.3530 -0.3068 28 1 3.8210 -1.3107 -2.0864 29 1 3.9186 0.2053 -1.1592 30 1 0.4722 0.1325 -2.3564 31 1 2.0518 0.9347 -2.5280 32 1 3.5990 0.2211 -4.1603 33 1 4.1067 -1.1893 -6.1115 34 1 0.6880 -3.5995 -5.2726 35 1 -0.2726 -1.6988 -2.3578 36 1 -0.6434 -3.0083 -3.3428 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063085212.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:15 Heat of formation + Delta-G solvation = 4.477028 kcal Electronic energy + Delta-G solvation = -18391.262175 eV Core-core repulsion = 15514.202793 eV Total energy + Delta-G solvation = -2877.059382 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.104 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.73695 -38.47897 -37.38319 -35.22234 -34.87115 -32.39730 -30.82501 -29.73410 -28.21531 -26.49307 -24.90043 -23.42026 -22.23493 -21.01419 -18.38403 -18.20505 -17.95553 -17.03756 -16.45083 -15.89101 -15.62845 -15.34345 -15.16158 -14.75452 -14.38904 -14.21519 -14.12648 -13.55877 -13.03547 -12.96487 -12.88751 -12.69626 -12.55751 -12.29479 -12.21756 -12.03592 -11.93650 -11.79216 -11.51849 -11.25173 -10.86424 -10.50820 -9.59816 -8.90367 -8.37817 -8.09083 -6.20700 0.30035 0.67310 1.21993 1.42183 1.44012 1.53782 2.43066 2.78474 3.13092 3.19198 3.54149 3.92645 4.02018 4.26276 4.43320 4.52985 4.64106 4.65119 4.75968 4.87185 4.93951 4.97716 5.03813 5.11537 5.24991 5.28660 5.43623 5.53290 5.62032 5.75022 5.81789 5.84792 6.28865 6.40962 6.62481 6.75425 6.94338 7.03702 7.48633 8.95764 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.035749 B = 0.004236 C = 0.004160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.059958 B = 6607.704930 C = 6729.282729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.215 3.785 3 H -0.039 1.039 4 C -0.515 4.515 5 H 0.057 0.943 6 C 0.014 3.986 7 N -0.919 5.919 8 Si 0.955 3.045 9 H -0.279 1.279 10 H -0.284 1.284 11 H -0.270 1.270 12 N -0.529 5.529 13 C 0.044 3.956 14 C 0.096 3.904 15 C -0.158 4.158 16 C -0.058 4.058 17 C -0.178 4.178 18 C 0.008 3.992 19 Cl -0.073 7.073 20 C -0.203 4.203 21 C 0.246 3.754 22 N -0.860 5.860 23 H 0.059 0.941 24 H 0.033 0.967 25 H 0.037 0.963 26 H 0.261 0.739 27 H 0.055 0.945 28 H 0.068 0.932 29 H 0.007 0.993 30 H 0.077 0.923 31 H 0.029 0.971 32 H 0.135 0.865 33 H 0.143 0.857 34 H 0.142 0.858 35 H 0.404 0.596 36 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.807 -5.352 -15.844 16.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.108 3.892 3 H -0.021 1.021 4 C -0.554 4.554 5 H 0.075 0.925 6 C -0.185 4.185 7 N -0.559 5.559 8 Si 0.781 3.219 9 H -0.205 1.205 10 H -0.210 1.210 11 H -0.195 1.195 12 N -0.254 5.254 13 C -0.105 4.105 14 C -0.032 4.032 15 C -0.163 4.163 16 C -0.077 4.077 17 C -0.198 4.198 18 C -0.020 4.020 19 Cl -0.044 7.044 20 C -0.226 4.226 21 C 0.137 3.863 22 N -0.398 5.398 23 H 0.077 0.923 24 H 0.051 0.949 25 H 0.056 0.944 26 H 0.070 0.930 27 H 0.074 0.926 28 H 0.087 0.913 29 H 0.025 0.975 30 H 0.095 0.905 31 H 0.047 0.953 32 H 0.153 0.847 33 H 0.160 0.840 34 H 0.159 0.841 35 H 0.234 0.766 36 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 0.557 -5.799 -15.808 16.847 hybrid contribution 0.320 0.519 1.240 1.382 sum 0.877 -5.280 -14.568 15.521 Atomic orbital electron populations 1.21684 0.96965 0.99504 0.99852 1.19076 0.92885 0.90110 0.87121 1.02107 1.21408 1.30883 1.12155 0.90942 0.92489 1.25633 0.95424 0.95746 1.01678 1.70006 1.37822 1.24146 1.23939 0.85599 0.77929 0.79084 0.79256 1.20475 1.20969 1.19490 1.62140 1.10103 1.51848 1.01284 1.22138 0.88167 0.98719 1.01434 1.20890 1.00549 0.93685 0.88077 1.19444 0.98609 0.99124 0.99122 1.20900 0.94991 0.98704 0.93125 1.20852 1.02120 0.96573 1.00294 1.20644 0.96658 0.94151 0.90540 1.98346 1.94402 1.69342 1.42348 1.20459 1.00824 1.03992 0.97363 1.17480 0.87555 0.91770 0.89471 1.42608 1.28430 1.36411 1.32394 0.92267 0.94867 0.94386 0.93021 0.92631 0.91310 0.97483 0.90461 0.95315 0.84696 0.83964 0.84066 0.76579 0.76497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.56 8.76 71.98 0.63 -4.93 16 2 C 0.21 10.49 2.06 44.17 0.09 10.58 16 3 H -0.04 -2.13 8.14 -2.39 -0.02 -2.15 16 4 C -0.52 -27.61 7.93 25.60 0.20 -27.40 16 5 H 0.06 3.07 6.39 -2.91 -0.02 3.05 16 6 C 0.01 0.75 5.30 84.65 0.45 1.20 16 7 N -0.92 -51.78 11.32 21.44 0.24 -51.53 16 8 Si 0.96 43.10 29.54 68.60 2.03 45.13 16 9 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 10 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 11 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 12 N -0.53 -21.41 4.61 -906.04 -4.18 -25.59 16 13 C 0.04 1.70 9.01 127.69 1.15 2.85 16 14 C 0.10 3.26 4.20 85.55 0.36 3.62 16 15 C -0.16 -4.65 4.60 -19.73 -0.09 -4.74 16 16 C -0.06 -1.50 8.61 22.25 0.19 -1.31 16 17 C -0.18 -4.20 9.83 22.31 0.22 -3.98 16 18 C 0.01 0.18 6.32 22.30 0.14 0.32 16 19 Cl -0.07 -1.55 28.95 -2.72 -0.08 -1.63 16 20 C -0.20 -4.97 9.68 22.42 0.22 -4.76 16 21 C 0.25 6.75 6.74 38.21 0.26 7.01 16 22 N -0.86 -21.68 9.00 -51.37 -0.46 -22.14 16 23 H 0.06 3.05 6.07 -2.39 -0.01 3.04 16 24 H 0.03 1.30 6.20 -2.39 -0.01 1.29 16 25 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 26 H 0.26 14.03 8.31 -92.70 -0.77 13.26 16 27 H 0.05 2.33 6.23 -2.39 -0.01 2.32 16 28 H 0.07 2.33 6.42 -2.39 -0.02 2.32 16 29 H 0.01 0.26 8.14 -2.39 -0.02 0.24 16 30 H 0.08 2.61 4.79 -2.38 -0.01 2.60 16 31 H 0.03 0.99 7.98 -2.39 -0.02 0.97 16 32 H 0.14 3.16 8.04 -2.91 -0.02 3.14 16 33 H 0.14 2.78 8.06 -2.91 -0.02 2.76 16 34 H 0.14 2.94 8.06 -2.91 -0.02 2.91 16 35 H 0.40 11.47 7.07 -92.71 -0.66 10.82 16 36 H 0.41 7.93 8.84 -92.71 -0.82 7.11 16 Total: -1.00 -57.80 304.66 1.00 -56.80 By element: Atomic # 1 Polarization: 20.87 SS G_CDS: -0.36 Total: 20.51 kcal Atomic # 6 Polarization: -25.36 SS G_CDS: 3.82 Total: -21.54 kcal Atomic # 7 Polarization: -94.87 SS G_CDS: -4.40 Total: -99.27 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.13 kcal Atomic # 17 Polarization: -1.55 SS G_CDS: -0.08 Total: -1.63 kcal Total: -57.80 1.00 -56.80 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063085212.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.274 kcal (2) G-P(sol) polarization free energy of solvation -57.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.796 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds