Wall clock time and date at job start Mon Mar 30 2020 07:45:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.33389 * 125.20644 * 2 1 4 4 C 1.38419 * 114.92338 * 180.02562 * 3 2 1 5 5 C 1.33387 * 114.92427 * 0.02562 * 4 3 2 6 6 C 1.50698 * 125.20786 * 179.97438 * 5 4 3 7 7 H 1.09001 * 109.47094 * 350.43881 * 6 5 4 8 8 C 1.52995 * 109.47340 * 110.43940 * 6 5 4 9 9 N 1.46898 * 109.47116 * 173.81909 * 8 6 5 10 10 N 1.46902 * 109.46965 * 230.44173 * 6 5 4 11 11 C 1.46900 * 110.99969 * 157.97143 * 10 6 5 12 12 C 1.46899 * 111.00143 * 34.01676 * 10 6 5 13 13 H 1.09000 * 109.47148 * 307.87585 * 12 10 6 14 14 C 1.53003 * 109.47096 * 67.87778 * 12 10 6 15 15 C 1.50694 * 109.47125 * 187.87770 * 12 10 6 16 16 H 1.08004 * 120.00460 * 0.02562 * 15 12 10 17 17 C 1.37883 * 120.00477 * 180.02562 * 15 12 10 18 18 N 1.31518 * 119.99386 * 359.97438 * 17 15 12 19 19 Si 1.86789 * 120.00508 * 180.02562 * 17 15 12 20 20 H 1.48506 * 109.47305 * 359.97438 * 19 17 15 21 21 H 1.48501 * 109.47266 * 119.99842 * 19 17 15 22 22 H 1.48506 * 109.47090 * 240.00058 * 19 17 15 23 23 S 1.75889 * 125.20154 * 180.33036 * 2 1 3 24 24 H 1.08999 * 109.47439 * 89.99634 * 1 2 3 25 25 H 1.09002 * 109.47013 * 209.99461 * 1 2 3 26 26 H 1.09002 * 109.46740 * 329.99302 * 1 2 3 27 27 H 1.07997 * 122.53739 * 0.06720 * 3 2 1 28 28 H 1.07997 * 122.53946 * 179.97438 * 4 3 2 29 29 H 1.08997 * 109.46974 * 293.82151 * 8 6 5 30 30 H 1.08998 * 109.47241 * 53.82239 * 8 6 5 31 31 H 1.00902 * 110.99729 * 157.51969 * 9 8 6 32 32 H 1.00897 * 111.00585 * 281.47497 * 9 8 6 33 33 H 1.08999 * 109.47372 * 300.29145 * 11 10 6 34 34 H 1.08999 * 109.47218 * 60.28782 * 11 10 6 35 35 H 1.09000 * 109.47324 * 180.28836 * 11 10 6 36 36 H 1.08997 * 109.46689 * 59.36671 * 14 12 10 37 37 H 1.09002 * 109.46783 * 179.36867 * 14 12 10 38 38 H 1.08999 * 109.47255 * 299.36809 * 14 12 10 39 39 H 0.97003 * 119.99675 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2760 1.0899 0.0000 4 6 3.6379 0.8428 -0.0006 5 6 3.9751 -0.4478 -0.0016 6 6 5.3860 -0.9772 -0.0029 7 1 6.0821 -0.1559 -0.1736 8 6 5.6876 -1.6287 1.3481 9 7 7.0064 -2.2738 1.2972 10 7 5.5338 -1.9744 -1.0714 11 6 6.9431 -2.1289 -1.4560 12 6 4.7058 -1.6269 -2.2340 13 1 3.6802 -1.4503 -1.9099 14 6 5.2576 -0.3612 -2.8931 15 6 4.7310 -2.7614 -3.2256 16 1 5.3043 -3.6517 -3.0133 17 6 4.0220 -2.6629 -4.4041 18 7 3.3234 -1.5789 -4.6625 19 14 4.0525 -4.0693 -5.6329 20 1 4.9057 -5.1661 -5.1089 21 1 2.6715 -4.5731 -5.8431 22 1 4.6053 -3.5867 -6.9240 23 16 2.5209 -1.4372 -0.0083 24 1 -0.3634 0.0001 -1.0276 25 1 -0.3633 -0.8901 0.5138 26 1 -0.3633 0.8900 0.5140 27 1 1.8669 2.0894 0.0011 28 1 4.3720 1.6349 -0.0010 29 1 5.6856 -0.8667 2.1275 30 1 4.9258 -2.3764 1.5691 31 1 7.3904 -2.3851 2.2236 32 1 6.9573 -3.1599 0.8172 33 1 7.3305 -1.1729 -1.8084 34 1 7.5212 -2.4592 -0.5930 35 1 7.0235 -2.8691 -2.2521 36 1 6.2869 -0.5342 -3.2070 37 1 4.6499 -0.1097 -3.7623 38 1 5.2290 0.4622 -2.1793 39 1 2.8249 -1.5095 -5.4917 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063085338.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:45:05 Heat of formation + Delta-G solvation = 52.709940 kcal Electronic energy + Delta-G solvation = -19456.273198 eV Core-core repulsion = 16719.182153 eV Total energy + Delta-G solvation = -2737.091045 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.57585 -36.73079 -34.23086 -32.26824 -31.67852 -28.94879 -28.14188 -25.13682 -24.96636 -24.10406 -22.41138 -21.15011 -19.22887 -18.15140 -16.65200 -16.06676 -15.67279 -15.14904 -14.57062 -14.17460 -13.96649 -13.52563 -13.39069 -12.93826 -12.74371 -12.72179 -12.20928 -11.72706 -11.67264 -11.37384 -11.27765 -11.22970 -10.88012 -10.78469 -10.55821 -10.54482 -10.29077 -10.01916 -9.92046 -9.61423 -8.81874 -8.41538 -8.33873 -7.83757 -7.45596 -7.02869 -5.90485 -3.92673 1.56259 2.22790 2.66380 3.27690 3.33919 3.41714 3.45953 4.48182 4.78236 5.09319 5.27366 5.40968 5.47937 5.55464 5.60630 5.77489 5.78077 5.91696 6.05472 6.07778 6.22592 6.34098 6.53606 6.63767 6.68797 6.82301 6.88004 7.00144 7.04969 7.07276 7.31875 7.38646 7.61207 7.72420 7.84312 7.94747 8.26796 8.51405 8.71951 9.12690 9.70293 11.16121 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.014951 B = 0.009034 C = 0.006513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1872.298621 B = 3098.765827 C = 4297.989322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C -0.204 4.204 3 C -0.142 4.142 4 C -0.143 4.143 5 C -0.154 4.154 6 C 0.154 3.846 7 H 0.054 0.946 8 C 0.079 3.921 9 N -0.844 5.844 10 N -0.528 5.528 11 C 0.024 3.976 12 C 0.193 3.807 13 H 0.062 0.938 14 C -0.169 4.169 15 C -0.493 4.493 16 H 0.060 0.940 17 C 0.058 3.942 18 N -0.891 5.891 19 Si 0.891 3.109 20 H -0.274 1.274 21 H -0.286 1.286 22 H -0.287 1.287 23 S 0.155 5.845 24 H 0.072 0.928 25 H 0.062 0.938 26 H 0.068 0.932 27 H 0.128 0.872 28 H 0.128 0.872 29 H 0.062 0.938 30 H 0.035 0.965 31 H 0.328 0.672 32 H 0.352 0.648 33 H 0.012 0.988 34 H 0.078 0.922 35 H 0.065 0.935 36 H 0.025 0.975 37 H 0.084 0.916 38 H 0.006 0.994 39 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.561 2.543 11.782 12.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.321 4.321 3 C -0.173 4.173 4 C -0.174 4.174 5 C -0.272 4.272 6 C 0.043 3.957 7 H 0.071 0.929 8 C -0.053 4.053 9 N -0.375 5.375 10 N -0.252 5.252 11 C -0.124 4.124 12 C 0.086 3.914 13 H 0.079 0.921 14 C -0.228 4.228 15 C -0.532 4.532 16 H 0.078 0.922 17 C -0.143 4.143 18 N -0.531 5.531 19 Si 0.719 3.281 20 H -0.199 1.199 21 H -0.212 1.212 22 H -0.213 1.213 23 S 0.421 5.579 24 H 0.090 0.910 25 H 0.081 0.919 26 H 0.087 0.913 27 H 0.145 0.855 28 H 0.146 0.854 29 H 0.081 0.919 30 H 0.053 0.947 31 H 0.140 0.860 32 H 0.167 0.833 33 H 0.030 0.970 34 H 0.096 0.904 35 H 0.083 0.917 36 H 0.044 0.956 37 H 0.103 0.897 38 H 0.025 0.975 39 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -0.914 1.214 11.406 11.506 hybrid contribution 0.143 1.054 -0.826 1.346 sum -0.771 2.268 10.580 10.848 Atomic orbital electron populations 1.20242 0.88638 1.02128 1.02515 1.24566 0.99800 0.97310 1.10471 1.19821 0.92854 0.98612 1.06013 1.19886 0.95955 0.95665 1.05852 1.24355 0.98670 0.96253 1.07944 1.20090 0.88412 0.93820 0.93358 0.92853 1.21788 0.89843 0.97477 0.96211 1.58920 1.25279 1.30864 1.22449 1.62504 1.08781 1.43070 1.10812 1.22598 0.89129 0.99799 1.00921 1.19755 0.93438 0.92434 0.85733 0.92083 1.22368 1.00074 0.98248 1.02098 1.21144 1.28764 1.01668 1.01650 0.92212 1.24894 0.95651 0.95707 0.98022 1.69922 1.31568 1.26695 1.24907 0.86560 0.77627 0.82666 0.81238 1.19853 1.21201 1.21348 1.84400 0.95111 1.07781 1.70588 0.90961 0.91871 0.91309 0.85457 0.85418 0.91943 0.94667 0.86024 0.83292 0.96970 0.90412 0.91666 0.95555 0.89718 0.97475 0.93324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.02 10.38 36.00 0.37 -0.65 16 2 C -0.20 -3.43 6.51 -36.00 -0.23 -3.66 16 3 C -0.14 -2.36 10.05 -41.21 -0.41 -2.78 16 4 C -0.14 -2.53 9.44 -41.21 -0.39 -2.92 16 5 C -0.15 -2.89 3.19 -36.00 -0.11 -3.01 16 6 C 0.15 2.87 1.86 -68.87 -0.13 2.74 16 7 H 0.05 1.05 7.54 -51.93 -0.39 0.65 16 8 C 0.08 1.20 6.46 -3.83 -0.02 1.17 16 9 N -0.84 -11.39 7.52 -10.37 -0.08 -11.46 16 10 N -0.53 -11.19 4.43 -229.69 -1.02 -12.21 16 11 C 0.02 0.48 8.21 60.06 0.49 0.97 16 12 C 0.19 4.83 1.79 -68.87 -0.12 4.71 16 13 H 0.06 1.62 4.30 -38.73 -0.17 1.45 16 14 C -0.17 -4.26 8.24 37.16 0.31 -3.95 16 15 C -0.49 -13.60 7.89 -34.44 -0.27 -13.87 16 16 H 0.06 1.66 6.98 -52.48 -0.37 1.29 16 17 C 0.06 1.62 5.30 -17.82 -0.09 1.52 16 18 N -0.89 -25.76 11.31 55.43 0.63 -25.13 16 19 Si 0.89 21.69 29.54 -169.99 -5.02 16.67 16 20 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 21 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 22 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 23 S 0.16 2.91 21.03 -107.50 -2.26 0.65 16 24 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 25 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 27 H 0.13 1.80 8.06 -52.49 -0.42 1.38 16 28 H 0.13 2.07 8.06 -52.49 -0.42 1.64 16 29 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.33 3.51 9.08 -39.29 -0.36 3.15 16 32 H 0.35 4.90 7.37 -39.29 -0.29 4.61 16 33 H 0.01 0.25 6.39 -51.93 -0.33 -0.08 16 34 H 0.08 1.34 4.59 -51.93 -0.24 1.10 16 35 H 0.06 1.40 6.60 -51.93 -0.34 1.06 16 36 H 0.03 0.65 6.40 -51.93 -0.33 0.31 16 37 H 0.08 2.38 6.05 -51.93 -0.31 2.06 16 38 H 0.01 0.15 6.32 -51.93 -0.33 -0.18 16 39 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 311.22 15.07 4.69 4.69 Total: -1.00 -29.55 311.22 -9.23 -38.79 By element: Atomic # 1 Polarization: 13.27 SS G_CDS: -5.55 Total: 7.72 kcal Atomic # 6 Polarization: -19.10 SS G_CDS: -0.62 Total: -19.72 kcal Atomic # 7 Polarization: -48.33 SS G_CDS: -0.47 Total: -48.80 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Atomic # 16 Polarization: 2.91 SS G_CDS: -2.26 Total: 0.65 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -29.55 -9.23 -38.79 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063085338.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.498 kcal (2) G-P(sol) polarization free energy of solvation -29.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.788 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds