Wall clock time and date at job start Mon Mar 30 2020 07:45:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.33389 * 125.20644 * 2 1 4 4 C 1.38419 * 114.92338 * 180.02562 * 3 2 1 5 5 C 1.33387 * 114.92427 * 0.02562 * 4 3 2 6 6 C 1.50698 * 125.20786 * 179.97438 * 5 4 3 7 7 H 1.09001 * 109.47094 * 350.43881 * 6 5 4 8 8 C 1.52995 * 109.47340 * 110.43940 * 6 5 4 9 9 N 1.46898 * 109.47116 * 173.81909 * 8 6 5 10 10 N 1.46902 * 109.46965 * 230.44173 * 6 5 4 11 11 C 1.46900 * 110.99969 * 157.97143 * 10 6 5 12 12 C 1.46899 * 111.00143 * 34.01676 * 10 6 5 13 13 H 1.09000 * 109.47148 * 307.87585 * 12 10 6 14 14 C 1.53003 * 109.47096 * 67.87778 * 12 10 6 15 15 C 1.50694 * 109.47125 * 187.87770 * 12 10 6 16 16 H 1.08004 * 120.00460 * 0.02562 * 15 12 10 17 17 C 1.37883 * 120.00477 * 180.02562 * 15 12 10 18 18 N 1.31518 * 119.99386 * 359.97438 * 17 15 12 19 19 Si 1.86789 * 120.00508 * 180.02562 * 17 15 12 20 20 H 1.48506 * 109.47305 * 359.97438 * 19 17 15 21 21 H 1.48501 * 109.47266 * 119.99842 * 19 17 15 22 22 H 1.48506 * 109.47090 * 240.00058 * 19 17 15 23 23 S 1.75889 * 125.20154 * 180.33036 * 2 1 3 24 24 H 1.08999 * 109.47439 * 89.99634 * 1 2 3 25 25 H 1.09002 * 109.47013 * 209.99461 * 1 2 3 26 26 H 1.09002 * 109.46740 * 329.99302 * 1 2 3 27 27 H 1.07997 * 122.53739 * 0.06720 * 3 2 1 28 28 H 1.07997 * 122.53946 * 179.97438 * 4 3 2 29 29 H 1.08997 * 109.46974 * 293.82151 * 8 6 5 30 30 H 1.08998 * 109.47241 * 53.82239 * 8 6 5 31 31 H 1.00902 * 110.99729 * 157.51969 * 9 8 6 32 32 H 1.00897 * 111.00585 * 281.47497 * 9 8 6 33 33 H 1.08999 * 109.47372 * 300.29145 * 11 10 6 34 34 H 1.08999 * 109.47218 * 60.28782 * 11 10 6 35 35 H 1.09000 * 109.47324 * 180.28836 * 11 10 6 36 36 H 1.08997 * 109.46689 * 59.36671 * 14 12 10 37 37 H 1.09002 * 109.46783 * 179.36867 * 14 12 10 38 38 H 1.08999 * 109.47255 * 299.36809 * 14 12 10 39 39 H 0.97003 * 119.99675 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2760 1.0899 0.0000 4 6 3.6379 0.8428 -0.0006 5 6 3.9751 -0.4478 -0.0016 6 6 5.3860 -0.9772 -0.0029 7 1 6.0821 -0.1559 -0.1736 8 6 5.6876 -1.6287 1.3481 9 7 7.0064 -2.2738 1.2972 10 7 5.5338 -1.9744 -1.0714 11 6 6.9431 -2.1289 -1.4560 12 6 4.7058 -1.6269 -2.2340 13 1 3.6802 -1.4503 -1.9099 14 6 5.2576 -0.3612 -2.8931 15 6 4.7310 -2.7614 -3.2256 16 1 5.3043 -3.6517 -3.0133 17 6 4.0220 -2.6629 -4.4041 18 7 3.3234 -1.5789 -4.6625 19 14 4.0525 -4.0693 -5.6329 20 1 4.9057 -5.1661 -5.1089 21 1 2.6715 -4.5731 -5.8431 22 1 4.6053 -3.5867 -6.9240 23 16 2.5209 -1.4372 -0.0083 24 1 -0.3634 0.0001 -1.0276 25 1 -0.3633 -0.8901 0.5138 26 1 -0.3633 0.8900 0.5140 27 1 1.8669 2.0894 0.0011 28 1 4.3720 1.6349 -0.0010 29 1 5.6856 -0.8667 2.1275 30 1 4.9258 -2.3764 1.5691 31 1 7.3904 -2.3851 2.2236 32 1 6.9573 -3.1599 0.8172 33 1 7.3305 -1.1729 -1.8084 34 1 7.5212 -2.4592 -0.5930 35 1 7.0235 -2.8691 -2.2521 36 1 6.2869 -0.5342 -3.2070 37 1 4.6499 -0.1097 -3.7623 38 1 5.2290 0.4622 -2.1793 39 1 2.8249 -1.5095 -5.4917 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063085338.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:45:04 Heat of formation + Delta-G solvation = 33.135786 kcal Electronic energy + Delta-G solvation = -19457.121997 eV Core-core repulsion = 16719.182153 eV Total energy + Delta-G solvation = -2737.939844 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.10559 -38.15112 -35.82207 -34.02455 -33.03924 -30.53714 -29.76701 -27.22016 -26.31123 -25.71805 -23.73875 -22.74114 -20.83674 -19.60911 -18.11092 -18.06625 -16.97932 -16.68726 -16.32749 -15.76019 -15.25189 -15.20280 -14.66717 -14.46658 -14.38378 -13.91771 -13.74422 -13.38202 -13.06695 -12.95771 -12.86513 -12.73519 -12.61612 -12.48639 -12.45405 -12.14571 -12.04033 -11.95165 -11.43462 -11.28744 -10.78842 -10.43625 -9.61619 -9.18574 -8.97024 -8.71928 -8.03018 -6.10916 0.20263 0.85888 1.29425 1.40089 1.42362 1.53225 1.93826 2.45787 3.25893 3.47417 3.62662 4.08302 4.17394 4.30264 4.40545 4.49089 4.67500 4.73699 4.76993 4.81860 4.83273 4.85548 4.94985 5.04136 5.05547 5.13458 5.31306 5.35221 5.43722 5.48172 5.65294 5.73844 5.83089 5.87279 6.25189 6.31393 6.60414 6.71922 6.86215 7.03415 7.55720 9.02522 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.014951 B = 0.009034 C = 0.006513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1872.298621 B = 3098.765827 C = 4297.989322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C -0.199 4.199 3 C -0.151 4.151 4 C -0.146 4.146 5 C -0.171 4.171 6 C 0.155 3.845 7 H 0.044 0.956 8 C 0.088 3.912 9 N -0.844 5.844 10 N -0.530 5.530 11 C 0.031 3.969 12 C 0.197 3.803 13 H 0.051 0.949 14 C -0.154 4.154 15 C -0.506 4.506 16 H 0.051 0.949 17 C 0.012 3.988 18 N -0.917 5.917 19 Si 0.949 3.051 20 H -0.269 1.269 21 H -0.283 1.283 22 H -0.285 1.285 23 S 0.106 5.894 24 H 0.069 0.931 25 H 0.073 0.927 26 H 0.097 0.903 27 H 0.156 0.844 28 H 0.141 0.859 29 H 0.081 0.919 30 H 0.029 0.971 31 H 0.348 0.652 32 H 0.350 0.650 33 H 0.001 0.999 34 H 0.108 0.892 35 H 0.044 0.956 36 H 0.020 0.980 37 H 0.055 0.945 38 H 0.018 0.982 39 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.622 2.775 12.855 13.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.317 4.317 3 C -0.181 4.181 4 C -0.177 4.177 5 C -0.289 4.289 6 C 0.044 3.956 7 H 0.062 0.938 8 C -0.044 4.044 9 N -0.377 5.377 10 N -0.253 5.253 11 C -0.117 4.117 12 C 0.089 3.911 13 H 0.069 0.931 14 C -0.213 4.213 15 C -0.545 4.545 16 H 0.070 0.930 17 C -0.186 4.186 18 N -0.558 5.558 19 Si 0.776 3.224 20 H -0.193 1.193 21 H -0.209 1.209 22 H -0.211 1.211 23 S 0.371 5.629 24 H 0.087 0.913 25 H 0.092 0.908 26 H 0.116 0.884 27 H 0.173 0.827 28 H 0.159 0.841 29 H 0.100 0.900 30 H 0.047 0.953 31 H 0.162 0.838 32 H 0.165 0.835 33 H 0.020 0.980 34 H 0.126 0.874 35 H 0.063 0.937 36 H 0.039 0.961 37 H 0.073 0.927 38 H 0.037 0.963 39 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -0.955 1.443 12.508 12.627 hybrid contribution 0.165 1.044 -1.107 1.531 sum -0.790 2.487 11.401 11.696 Atomic orbital electron populations 1.20371 0.86207 1.04117 1.02862 1.24992 1.01342 0.95946 1.09436 1.20157 0.92445 0.99914 1.05572 1.20207 0.97000 0.95629 1.04846 1.24412 0.98477 0.96593 1.09421 1.20184 0.88359 0.93139 0.93875 0.93788 1.21633 0.90418 0.97754 0.94564 1.58779 1.24298 1.30653 1.24013 1.62425 1.08801 1.44159 1.09941 1.22599 0.88901 0.98656 1.01592 1.19555 0.93722 0.91286 0.86508 0.93134 1.22188 0.98983 0.99036 1.01109 1.21430 1.28416 1.02144 1.02531 0.93029 1.25587 0.95483 0.97842 0.99700 1.70045 1.32216 1.28184 1.25309 0.85635 0.77639 0.80093 0.79010 1.19331 1.20857 1.21125 1.84478 0.96673 1.10055 1.71678 0.91277 0.90813 0.88421 0.82677 0.84114 0.90043 0.95258 0.83772 0.83537 0.98031 0.87380 0.93687 0.96094 0.92662 0.96328 0.93417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.89 10.38 71.23 0.74 -1.15 16 2 C -0.20 -6.45 6.51 24.59 0.16 -6.29 16 3 C -0.15 -4.74 10.05 21.22 0.21 -4.53 16 4 C -0.15 -4.99 9.44 21.21 0.20 -4.79 16 5 C -0.17 -6.33 3.19 24.59 0.08 -6.25 16 6 C 0.16 5.64 1.86 44.17 0.08 5.72 16 7 H 0.04 1.68 7.54 -2.39 -0.02 1.66 16 8 C 0.09 2.55 6.46 86.30 0.56 3.11 16 9 N -0.84 -20.97 7.52 -186.73 -1.40 -22.38 16 10 N -0.53 -22.39 4.43 -880.61 -3.90 -26.30 16 11 C 0.03 1.22 8.21 127.69 1.05 2.27 16 12 C 0.20 9.97 1.79 44.17 0.08 10.05 16 13 H 0.05 2.72 4.30 -10.78 -0.05 2.67 16 14 C -0.15 -7.87 8.24 71.98 0.59 -7.28 16 15 C -0.51 -28.25 7.89 25.60 0.20 -28.04 16 16 H 0.05 2.90 6.98 -2.91 -0.02 2.88 16 17 C 0.01 0.67 5.30 84.66 0.45 1.12 16 18 N -0.92 -53.68 11.31 21.45 0.24 -53.44 16 19 Si 0.95 44.81 29.54 68.60 2.03 46.83 16 20 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 21 H -0.28 -13.11 7.11 99.48 0.71 -12.41 16 22 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 23 S 0.11 3.96 21.03 -56.49 -1.19 2.77 16 24 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 25 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 26 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 27 H 0.16 3.94 8.06 -2.91 -0.02 3.91 16 28 H 0.14 4.33 8.06 -2.91 -0.02 4.31 16 29 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 30 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.35 6.49 9.08 -89.69 -0.81 5.68 16 32 H 0.35 9.09 7.37 -89.70 -0.66 8.43 16 33 H 0.00 0.05 6.39 -2.39 -0.02 0.03 16 34 H 0.11 3.57 4.59 -2.39 -0.01 3.56 16 35 H 0.04 1.94 6.60 -2.39 -0.02 1.92 16 36 H 0.02 1.03 6.40 -2.39 -0.02 1.02 16 37 H 0.05 3.15 6.05 -2.39 -0.01 3.14 16 38 H 0.02 0.85 6.32 -2.39 -0.02 0.84 16 39 H 0.26 14.38 8.31 -92.71 -0.77 13.61 16 Total: -1.00 -63.19 311.22 -0.26 -63.45 By element: Atomic # 1 Polarization: 25.56 SS G_CDS: -0.44 Total: 25.12 kcal Atomic # 6 Polarization: -40.47 SS G_CDS: 4.40 Total: -36.07 kcal Atomic # 7 Polarization: -97.05 SS G_CDS: -5.07 Total: -102.12 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.83 kcal Atomic # 16 Polarization: 3.96 SS G_CDS: -1.19 Total: 2.77 kcal Total: -63.19 -0.26 -63.45 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063085338.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.589 kcal (2) G-P(sol) polarization free energy of solvation -63.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.453 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds