Wall clock time and date at job start Mon Mar 30 2020 06:46:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47220 * 2 1 4 4 C 1.50695 * 109.47467 * 119.99877 * 2 1 3 5 5 H 1.08000 * 119.99843 * 119.99442 * 4 2 1 6 6 C 1.37874 * 120.00376 * 300.00272 * 4 2 1 7 7 N 1.31516 * 119.99673 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 120.00359 * 179.97438 * 6 4 2 9 9 H 1.48495 * 109.47240 * 59.99776 * 8 6 4 10 10 H 1.48502 * 109.47090 * 179.97438 * 8 6 4 11 11 H 1.48498 * 109.46911 * 299.99363 * 8 6 4 12 12 N 1.46899 * 109.46894 * 240.00322 * 2 1 3 13 13 C 1.46902 * 110.99548 * 306.04233 * 12 2 1 14 14 C 1.46897 * 111.00418 * 69.99579 * 12 2 1 15 15 C 1.50697 * 109.47320 * 164.97019 * 14 12 2 16 16 C 1.38292 * 119.93181 * 105.94139 * 15 14 12 17 17 C 1.38088 * 120.08877 * 180.27622 * 16 15 14 18 18 C 1.38942 * 119.95135 * 0.02562 * 17 16 15 19 19 N 1.39670 * 120.06825 * 179.97438 * 18 17 16 20 20 C 1.38872 * 119.86225 * 359.97438 * 18 17 16 21 21 C 1.38232 * 119.91304 * 0.02562 * 20 18 17 22 22 Cl 1.73608 * 119.97356 * 179.97438 * 21 20 18 23 23 H 1.09002 * 109.47501 * 59.99517 * 1 2 3 24 24 H 1.08994 * 109.47524 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.46663 * 300.00141 * 1 2 3 26 26 H 0.96999 * 120.00010 * 180.02562 * 7 6 4 27 27 H 1.09010 * 109.47144 * 189.72552 * 13 12 2 28 28 H 1.08999 * 109.47578 * 309.72698 * 13 12 2 29 29 H 1.09005 * 109.47066 * 69.73138 * 13 12 2 30 30 H 1.08996 * 109.46685 * 44.97329 * 14 12 2 31 31 H 1.08997 * 109.47153 * 284.97531 * 14 12 2 32 32 H 1.08000 * 119.95314 * 0.28328 * 16 15 14 33 33 H 1.08003 * 120.02355 * 179.97438 * 17 16 15 34 34 H 0.96999 * 120.00324 * 180.02562 * 19 18 17 35 35 H 0.97000 * 119.99928 * 0.02562 * 19 18 17 36 36 H 1.08000 * 120.03640 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6994 -0.2394 2.4827 7 7 0.9436 0.8301 2.6034 8 14 2.3215 -1.1203 4.0079 9 1 3.8065 -1.1209 4.0080 10 1 1.8271 -0.4199 5.2204 11 1 1.8259 -2.5201 4.0077 12 7 2.0196 -0.6924 -1.1995 13 6 1.4342 -2.0354 -1.3078 14 6 1.7528 0.0972 -2.4091 15 6 2.5735 -0.4419 -3.5522 16 6 1.9640 -1.1760 -4.5532 17 6 2.7139 -1.6764 -5.5992 18 6 4.0827 -1.4424 -5.6456 19 7 4.8437 -1.9479 -6.7022 20 6 4.6927 -0.7050 -4.6393 21 6 3.9366 -0.2067 -3.5948 22 17 4.6976 0.7148 -2.3356 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 0.7096 1.1617 3.4844 27 1 1.9383 -2.5887 -2.1002 28 1 1.5570 -2.5627 -0.3617 29 1 0.3729 -1.9514 -1.5418 30 1 2.0200 1.1385 -2.2294 31 1 0.6940 0.0319 -2.6594 32 1 0.9001 -1.3581 -4.5169 33 1 2.2369 -2.2500 -6.3802 34 1 5.7992 -1.7843 -6.7334 35 1 4.4165 -2.4625 -7.4047 36 1 5.7564 -0.5211 -4.6728 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063085539.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:56 Heat of formation + Delta-G solvation = 23.288467 kcal Electronic energy + Delta-G solvation = -18386.503558 eV Core-core repulsion = 15510.259901 eV Total energy + Delta-G solvation = -2876.243657 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.104 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.43671 -37.06340 -35.99342 -34.42167 -32.55000 -30.51817 -29.91645 -28.04382 -25.93051 -25.11072 -23.30100 -22.66002 -20.93480 -19.08778 -17.16504 -16.97644 -16.14739 -15.30746 -14.91526 -14.64063 -14.15113 -14.02186 -13.50175 -13.35186 -13.12178 -12.94209 -12.34950 -11.67593 -11.63274 -11.29195 -11.15790 -10.99279 -10.86035 -10.68378 -10.59316 -10.38566 -10.28949 -10.01276 -9.95501 -9.67581 -8.81078 -8.52508 -8.29218 -7.42806 -7.00011 -5.92062 -3.94570 1.45359 1.68073 2.65709 3.38425 3.42184 3.45848 3.82898 3.90854 4.49796 4.96859 5.12712 5.29632 5.35859 5.40356 5.62394 5.75533 5.90565 6.03176 6.25727 6.27762 6.40637 6.46415 6.53253 6.74730 6.82647 6.85017 6.92712 6.98091 7.22543 7.41905 7.57548 7.65822 7.79975 7.94238 8.25807 8.50070 8.71138 9.11486 9.69715 11.15047 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.028897 B = 0.005186 C = 0.004900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.717756 B = 5397.770767 C = 5713.107246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.213 3.787 3 H 0.038 0.962 4 C -0.492 4.492 5 H 0.061 0.939 6 C 0.057 3.943 7 N -0.896 5.896 8 Si 0.895 3.105 9 H -0.278 1.278 10 H -0.289 1.289 11 H -0.279 1.279 12 N -0.522 5.522 13 C 0.037 3.963 14 C 0.096 3.904 15 C -0.111 4.111 16 C -0.059 4.059 17 C -0.198 4.198 18 C 0.215 3.785 19 N -0.881 5.881 20 C -0.197 4.197 21 C 0.036 3.964 22 Cl -0.050 7.050 23 H 0.005 0.995 24 H 0.030 0.970 25 H 0.087 0.913 26 H 0.259 0.741 27 H 0.041 0.959 28 H 0.072 0.928 29 H 0.012 0.988 30 H 0.076 0.924 31 H 0.032 0.968 32 H 0.124 0.876 33 H 0.119 0.881 34 H 0.396 0.604 35 H 0.396 0.604 36 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.573 -3.587 -17.156 18.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.107 3.893 3 H 0.056 0.944 4 C -0.531 4.531 5 H 0.079 0.921 6 C -0.143 4.143 7 N -0.536 5.536 8 Si 0.723 3.277 9 H -0.203 1.203 10 H -0.215 1.215 11 H -0.205 1.205 12 N -0.245 5.245 13 C -0.111 4.111 14 C -0.032 4.032 15 C -0.114 4.114 16 C -0.078 4.078 17 C -0.221 4.221 18 C 0.111 3.889 19 N -0.420 5.420 20 C -0.220 4.220 21 C 0.008 3.992 22 Cl -0.021 7.021 23 H 0.024 0.976 24 H 0.049 0.951 25 H 0.105 0.895 26 H 0.069 0.931 27 H 0.059 0.941 28 H 0.091 0.909 29 H 0.030 0.970 30 H 0.095 0.905 31 H 0.050 0.950 32 H 0.142 0.858 33 H 0.137 0.863 34 H 0.224 0.776 35 H 0.224 0.776 36 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 5.045 -3.409 -16.782 17.852 hybrid contribution -0.333 -0.481 0.578 0.823 sum 4.712 -3.890 -16.204 17.317 Atomic orbital electron populations 1.22418 1.01021 0.99292 1.00362 1.19299 0.89501 0.94509 0.85976 0.94365 1.21068 1.30140 1.12307 0.89605 0.92068 1.24906 0.95367 0.95177 0.98867 1.69878 1.37307 1.23127 1.23306 0.86618 0.79227 0.79588 0.82284 1.20316 1.21518 1.20460 1.62297 1.58625 1.02085 1.01455 1.22213 0.95415 0.92090 1.01421 1.20914 0.95188 0.97962 0.89174 1.19701 0.92547 1.01512 0.97625 1.20753 0.99496 0.95052 0.92518 1.20533 0.92115 1.07722 1.01751 1.17510 0.90786 0.92608 0.88007 1.42365 1.10364 1.62845 1.26458 1.20340 0.99830 1.05911 0.95917 1.20475 0.92417 0.96196 0.90119 1.98396 1.81150 1.71414 1.51135 0.97588 0.95131 0.89472 0.93104 0.94063 0.90896 0.96989 0.90539 0.95001 0.85762 0.86302 0.77588 0.77564 0.85713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.18 8.24 37.16 0.31 -3.87 16 2 C 0.21 5.39 2.30 -68.87 -0.16 5.23 16 3 H 0.04 1.07 7.87 -51.93 -0.41 0.66 16 4 C -0.49 -13.60 7.83 -34.44 -0.27 -13.87 16 5 H 0.06 1.71 7.18 -52.49 -0.38 1.33 16 6 C 0.06 1.60 5.30 -17.82 -0.09 1.50 16 7 N -0.90 -25.78 11.32 55.43 0.63 -25.15 16 8 Si 0.89 21.72 29.54 -169.99 -5.02 16.70 16 9 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 10 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 11 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 12 N -0.52 -11.30 4.48 -237.73 -1.07 -12.37 16 13 C 0.04 0.75 8.34 60.07 0.50 1.25 16 14 C 0.10 1.80 3.87 -4.98 -0.02 1.78 16 15 C -0.11 -1.82 4.64 -104.55 -0.49 -2.30 16 16 C -0.06 -0.82 9.45 -39.62 -0.37 -1.19 16 17 C -0.20 -2.40 9.90 -39.38 -0.39 -2.79 16 18 C 0.21 2.57 6.75 -83.79 -0.57 2.00 16 19 N -0.88 -7.20 9.09 32.41 0.29 -6.90 16 20 C -0.20 -2.68 9.68 -39.35 -0.38 -3.07 16 21 C 0.04 0.58 6.31 -39.53 -0.25 0.33 16 22 Cl -0.05 -0.88 27.50 -51.86 -1.43 -2.31 16 23 H 0.01 0.12 7.04 -51.93 -0.37 -0.25 16 24 H 0.03 0.72 6.55 -51.93 -0.34 0.38 16 25 H 0.09 2.35 6.07 -51.93 -0.32 2.03 16 26 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 27 H 0.04 0.76 7.45 -51.92 -0.39 0.37 16 28 H 0.07 1.59 6.65 -51.93 -0.35 1.24 16 29 H 0.01 0.23 6.69 -51.93 -0.35 -0.12 16 30 H 0.08 1.50 7.31 -51.93 -0.38 1.12 16 31 H 0.03 0.58 6.96 -51.93 -0.36 0.22 16 32 H 0.12 1.56 7.99 -52.49 -0.42 1.14 16 33 H 0.12 1.14 8.06 -52.48 -0.42 0.72 16 34 H 0.40 2.61 8.84 -40.82 -0.36 2.25 16 35 H 0.40 2.43 8.84 -40.82 -0.36 2.07 16 36 H 0.12 1.50 8.06 -52.49 -0.42 1.08 16 LS Contribution 305.73 15.07 4.61 4.61 Total: -1.00 -29.65 305.73 -8.91 -38.56 By element: Atomic # 1 Polarization: 6.61 SS G_CDS: -4.75 Total: 1.86 kcal Atomic # 6 Polarization: -12.82 SS G_CDS: -2.18 Total: -15.00 kcal Atomic # 7 Polarization: -44.28 SS G_CDS: -0.14 Total: -44.42 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Atomic # 17 Polarization: -0.88 SS G_CDS: -1.43 Total: -2.31 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -29.65 -8.91 -38.56 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063085539.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.846 kcal (2) G-P(sol) polarization free energy of solvation -29.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.558 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds