Wall clock time and date at job start Mon Mar 30 2020 06:46:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47220 * 2 1 4 4 C 1.50695 * 109.47467 * 119.99877 * 2 1 3 5 5 H 1.08000 * 119.99843 * 119.99442 * 4 2 1 6 6 C 1.37874 * 120.00376 * 300.00272 * 4 2 1 7 7 N 1.31516 * 119.99673 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 120.00359 * 179.97438 * 6 4 2 9 9 H 1.48495 * 109.47240 * 59.99776 * 8 6 4 10 10 H 1.48502 * 109.47090 * 179.97438 * 8 6 4 11 11 H 1.48498 * 109.46911 * 299.99363 * 8 6 4 12 12 N 1.46899 * 109.46894 * 240.00322 * 2 1 3 13 13 C 1.46902 * 110.99548 * 306.04233 * 12 2 1 14 14 C 1.46897 * 111.00418 * 69.99579 * 12 2 1 15 15 C 1.50697 * 109.47320 * 164.97019 * 14 12 2 16 16 C 1.38292 * 119.93181 * 105.94139 * 15 14 12 17 17 C 1.38088 * 120.08877 * 180.27622 * 16 15 14 18 18 C 1.38942 * 119.95135 * 0.02562 * 17 16 15 19 19 N 1.39670 * 120.06825 * 179.97438 * 18 17 16 20 20 C 1.38872 * 119.86225 * 359.97438 * 18 17 16 21 21 C 1.38232 * 119.91304 * 0.02562 * 20 18 17 22 22 Cl 1.73608 * 119.97356 * 179.97438 * 21 20 18 23 23 H 1.09002 * 109.47501 * 59.99517 * 1 2 3 24 24 H 1.08994 * 109.47524 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.46663 * 300.00141 * 1 2 3 26 26 H 0.96999 * 120.00010 * 180.02562 * 7 6 4 27 27 H 1.09010 * 109.47144 * 189.72552 * 13 12 2 28 28 H 1.08999 * 109.47578 * 309.72698 * 13 12 2 29 29 H 1.09005 * 109.47066 * 69.73138 * 13 12 2 30 30 H 1.08996 * 109.46685 * 44.97329 * 14 12 2 31 31 H 1.08997 * 109.47153 * 284.97531 * 14 12 2 32 32 H 1.08000 * 119.95314 * 0.28328 * 16 15 14 33 33 H 1.08003 * 120.02355 * 179.97438 * 17 16 15 34 34 H 0.96999 * 120.00324 * 180.02562 * 19 18 17 35 35 H 0.97000 * 119.99928 * 0.02562 * 19 18 17 36 36 H 1.08000 * 120.03640 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6994 -0.2394 2.4827 7 7 0.9436 0.8301 2.6034 8 14 2.3215 -1.1203 4.0079 9 1 3.8065 -1.1209 4.0080 10 1 1.8271 -0.4199 5.2204 11 1 1.8259 -2.5201 4.0077 12 7 2.0196 -0.6924 -1.1995 13 6 1.4342 -2.0354 -1.3078 14 6 1.7528 0.0972 -2.4091 15 6 2.5735 -0.4419 -3.5522 16 6 1.9640 -1.1760 -4.5532 17 6 2.7139 -1.6764 -5.5992 18 6 4.0827 -1.4424 -5.6456 19 7 4.8437 -1.9479 -6.7022 20 6 4.6927 -0.7050 -4.6393 21 6 3.9366 -0.2067 -3.5948 22 17 4.6976 0.7148 -2.3356 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 0.7096 1.1617 3.4844 27 1 1.9383 -2.5887 -2.1002 28 1 1.5570 -2.5627 -0.3617 29 1 0.3729 -1.9514 -1.5418 30 1 2.0200 1.1385 -2.2294 31 1 0.6940 0.0319 -2.6594 32 1 0.9001 -1.3581 -4.5169 33 1 2.2369 -2.2500 -6.3802 34 1 5.7992 -1.7843 -6.7334 35 1 4.4165 -2.4625 -7.4047 36 1 5.7564 -0.5211 -4.6728 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063085539.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:56 Heat of formation + Delta-G solvation = 4.147827 kcal Electronic energy + Delta-G solvation = -18387.333558 eV Core-core repulsion = 15510.259901 eV Total energy + Delta-G solvation = -2877.073657 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.104 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.54800 -38.68178 -37.24539 -35.61130 -34.41709 -31.58741 -31.36922 -29.70641 -27.44174 -27.12051 -24.85367 -23.71757 -22.21229 -20.87045 -18.25409 -18.05701 -17.84478 -17.02658 -16.30994 -16.08041 -15.69791 -15.23060 -14.84493 -14.72516 -14.41946 -14.33204 -14.04482 -13.48848 -13.01983 -12.87368 -12.72795 -12.55652 -12.50309 -12.41316 -12.33685 -12.07457 -11.92288 -11.71452 -11.41348 -11.10352 -10.85152 -10.43402 -9.62360 -8.73882 -8.35158 -8.04482 -6.14641 0.39448 0.60060 1.43907 1.45795 1.46055 1.53074 2.46443 2.83228 3.06589 3.23779 3.63147 3.98273 4.09401 4.24353 4.45898 4.60078 4.69558 4.71882 4.79074 4.86577 4.94333 4.95488 4.98614 5.21219 5.24576 5.26695 5.44862 5.57766 5.68422 5.78688 5.83484 5.86467 6.29520 6.59073 6.60322 6.83604 6.99313 7.05685 7.53929 9.00735 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.028897 B = 0.005186 C = 0.004900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.717756 B = 5397.770767 C = 5713.107246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.220 3.780 3 H 0.002 0.998 4 C -0.506 4.506 5 H 0.053 0.947 6 C 0.011 3.989 7 N -0.922 5.922 8 Si 0.955 3.045 9 H -0.276 1.276 10 H -0.285 1.285 11 H -0.271 1.271 12 N -0.530 5.530 13 C 0.046 3.954 14 C 0.104 3.896 15 C -0.138 4.138 16 C -0.057 4.057 17 C -0.194 4.194 18 C 0.226 3.774 19 N -0.862 5.862 20 C -0.206 4.206 21 C 0.020 3.980 22 Cl -0.078 7.078 23 H 0.023 0.977 24 H 0.033 0.967 25 H 0.059 0.941 26 H 0.259 0.741 27 H 0.061 0.939 28 H 0.051 0.949 29 H 0.020 0.980 30 H 0.057 0.943 31 H 0.037 0.963 32 H 0.139 0.861 33 H 0.152 0.848 34 H 0.407 0.593 35 H 0.411 0.589 36 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.875 -5.432 -19.282 20.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.113 3.887 3 H 0.020 0.980 4 C -0.545 4.545 5 H 0.071 0.929 6 C -0.187 4.187 7 N -0.562 5.562 8 Si 0.781 3.219 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.196 1.196 12 N -0.253 5.253 13 C -0.102 4.102 14 C -0.024 4.024 15 C -0.141 4.141 16 C -0.077 4.077 17 C -0.216 4.216 18 C 0.120 3.880 19 N -0.403 5.403 20 C -0.229 4.229 21 C -0.008 4.008 22 Cl -0.049 7.049 23 H 0.042 0.958 24 H 0.052 0.948 25 H 0.078 0.922 26 H 0.069 0.931 27 H 0.080 0.920 28 H 0.070 0.930 29 H 0.038 0.962 30 H 0.075 0.925 31 H 0.055 0.945 32 H 0.156 0.844 33 H 0.169 0.831 34 H 0.236 0.764 35 H 0.241 0.759 36 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 5.368 -5.279 -18.962 20.402 hybrid contribution -0.381 0.055 1.053 1.122 sum 4.987 -5.224 -17.908 19.309 Atomic orbital electron populations 1.22209 1.00385 0.99222 0.99824 1.19008 0.89802 0.92657 0.87208 0.98044 1.21313 1.30089 1.12176 0.90904 0.92881 1.25640 0.95560 0.95854 1.01632 1.70011 1.38147 1.24229 1.23830 0.85660 0.78551 0.78792 0.78883 1.20201 1.21065 1.19597 1.62180 1.58892 1.02781 1.01436 1.22126 0.96042 0.91108 1.00956 1.20800 0.96000 0.96742 0.88873 1.19515 0.92499 1.04077 0.98028 1.20918 1.00371 0.94220 0.92149 1.20853 0.92054 1.07034 1.01699 1.17603 0.91164 0.91282 0.88000 1.42360 1.10861 1.61635 1.25424 1.20474 1.00424 1.06242 0.95799 1.20634 0.92675 0.97028 0.90430 1.98382 1.81577 1.72323 1.52619 0.95809 0.94756 0.92204 0.93144 0.92037 0.92976 0.96206 0.92502 0.94461 0.84366 0.83070 0.76388 0.75894 0.84525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.76 8.24 71.98 0.59 -7.16 16 2 C 0.22 11.46 2.30 44.17 0.10 11.56 16 3 H 0.00 0.10 7.87 -2.39 -0.02 0.08 16 4 C -0.51 -28.55 7.83 25.60 0.20 -28.35 16 5 H 0.05 3.02 7.18 -2.91 -0.02 3.00 16 6 C 0.01 0.63 5.30 84.65 0.45 1.08 16 7 N -0.92 -54.16 11.32 21.45 0.24 -53.92 16 8 Si 0.96 44.95 29.54 68.60 2.03 46.98 16 9 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 10 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 11 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 12 N -0.53 -23.24 4.48 -906.05 -4.06 -27.30 16 13 C 0.05 1.82 8.34 127.69 1.06 2.89 16 14 C 0.10 3.92 3.87 85.56 0.33 4.25 16 15 C -0.14 -4.41 4.64 -19.82 -0.09 -4.50 16 16 C -0.06 -1.44 9.45 22.25 0.21 -1.23 16 17 C -0.19 -3.93 9.90 22.40 0.22 -3.71 16 18 C 0.23 4.61 6.75 38.21 0.26 4.87 16 19 N -0.86 -10.49 9.09 -51.38 -0.47 -10.96 16 20 C -0.21 -5.23 9.68 22.42 0.22 -5.01 16 21 C 0.02 0.64 6.31 22.30 0.14 0.78 16 22 Cl -0.08 -2.82 27.50 -2.72 -0.07 -2.89 16 23 H 0.02 1.04 7.04 -2.39 -0.02 1.02 16 24 H 0.03 1.62 6.55 -2.39 -0.02 1.60 16 25 H 0.06 3.29 6.07 -2.39 -0.01 3.28 16 26 H 0.26 14.58 8.31 -92.71 -0.77 13.81 16 27 H 0.06 2.17 7.45 -2.38 -0.02 2.15 16 28 H 0.05 2.26 6.65 -2.39 -0.02 2.24 16 29 H 0.02 0.74 6.69 -2.38 -0.02 0.72 16 30 H 0.06 2.33 7.31 -2.39 -0.02 2.31 16 31 H 0.04 1.34 6.96 -2.39 -0.02 1.32 16 32 H 0.14 3.04 7.99 -2.91 -0.02 3.01 16 33 H 0.15 2.09 8.06 -2.91 -0.02 2.07 16 34 H 0.41 3.76 8.84 -92.71 -0.82 2.94 16 35 H 0.41 3.09 8.84 -92.71 -0.82 2.27 16 36 H 0.14 3.04 8.06 -2.91 -0.02 3.02 16 Total: -1.00 -64.84 305.73 0.83 -64.00 By element: Atomic # 1 Polarization: 9.15 SS G_CDS: -0.53 Total: 8.62 kcal Atomic # 6 Polarization: -28.23 SS G_CDS: 3.70 Total: -24.53 kcal Atomic # 7 Polarization: -87.89 SS G_CDS: -4.28 Total: -92.17 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.98 kcal Atomic # 17 Polarization: -2.82 SS G_CDS: -0.07 Total: -2.89 kcal Total: -64.84 0.83 -64.00 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063085539.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.152 kcal (2) G-P(sol) polarization free energy of solvation -64.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.004 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds