Wall clock time and date at job start Mon Mar 30 2020 06:47:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.47352 * 2 1 4 4 C 1.50704 * 109.47280 * 239.99996 * 2 1 3 5 5 H 1.07998 * 119.99399 * 334.99952 * 4 2 1 6 6 C 1.37875 * 120.00309 * 154.99594 * 4 2 1 7 7 N 1.31515 * 119.99986 * 185.12764 * 6 4 2 8 8 Si 1.86799 * 120.00055 * 5.13425 * 6 4 2 9 9 H 1.48502 * 109.47236 * 84.82313 * 8 6 4 10 10 H 1.48494 * 109.47132 * 204.82622 * 8 6 4 11 11 H 1.48504 * 109.46939 * 324.82837 * 8 6 4 12 12 N 1.46896 * 109.47440 * 120.00045 * 2 1 3 13 13 C 1.46898 * 111.00258 * 58.95239 * 12 2 1 14 14 C 1.46906 * 110.99872 * 294.99773 * 12 2 1 15 15 C 1.50698 * 109.46931 * 189.99732 * 14 12 2 16 16 C 1.38288 * 119.93240 * 259.72110 * 15 14 12 17 17 C 1.38091 * 120.08469 * 179.76526 * 16 15 14 18 18 C 1.38945 * 119.95321 * 0.51865 * 17 16 15 19 19 N 1.39672 * 120.06777 * 179.71870 * 18 17 16 20 20 C 1.38865 * 119.86084 * 359.73680 * 18 17 16 21 21 C 1.38240 * 119.91357 * 0.02562 * 20 18 17 22 22 Cl 1.73605 * 119.97359 * 179.97438 * 21 20 18 23 23 H 1.09001 * 109.47132 * 174.94504 * 1 2 3 24 24 H 1.09003 * 109.46854 * 294.93770 * 1 2 3 25 25 H 1.08991 * 109.47289 * 54.93816 * 1 2 3 26 26 H 0.96997 * 119.99587 * 179.97438 * 7 6 4 27 27 H 1.09004 * 109.46981 * 296.05290 * 13 12 2 28 28 H 1.08999 * 109.47003 * 56.04474 * 13 12 2 29 29 H 1.08993 * 109.47521 * 176.04944 * 13 12 2 30 30 H 1.08994 * 109.47317 * 310.00182 * 14 12 2 31 31 H 1.09001 * 109.46735 * 70.00199 * 14 12 2 32 32 H 1.07999 * 119.95446 * 0.03222 * 16 15 14 33 33 H 1.08001 * 120.02262 * 180.23427 * 17 16 15 34 34 H 0.96996 * 120.00076 * 180.02562 * 19 18 17 35 35 H 0.97003 * 120.00101 * 0.02562 * 19 18 17 36 36 H 1.08007 * 120.03933 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 1.4131 -1.4486 -1.7184 6 6 3.2824 -0.4180 -1.7333 7 7 3.6808 -0.9622 -2.8624 8 14 4.4102 0.7511 -0.8109 9 1 5.1570 0.0002 0.2301 10 1 5.3703 1.3662 -1.7621 11 1 3.5996 1.8161 -0.1674 12 7 2.0197 -0.6925 1.1994 13 6 1.5284 -2.0761 1.2460 14 6 1.6488 0.0392 2.4180 15 6 2.3680 -0.5571 3.6005 16 6 1.7046 -1.4302 4.4431 17 6 2.3621 -1.9822 5.5247 18 6 3.6886 -1.6516 5.7729 19 7 4.3541 -2.2040 6.8696 20 6 4.3512 -0.7705 4.9284 21 6 3.6891 -0.2250 3.8444 22 17 4.5157 0.8772 2.7881 23 1 -0.3633 -1.0237 -0.0905 24 1 -0.3633 0.4333 0.9319 25 1 -0.3633 0.5903 -0.8411 26 1 4.5601 -0.7562 -3.2163 27 1 0.4420 -2.0730 1.3347 28 1 1.8167 -2.5950 0.3318 29 1 1.9618 -2.5868 2.1058 30 1 1.9298 1.0870 2.3125 31 1 0.5723 -0.0345 2.5726 32 1 0.6723 -1.6840 4.2524 33 1 1.8441 -2.6669 6.1799 34 1 5.2800 -1.9722 7.0421 35 1 3.8903 -2.8195 7.4587 36 1 5.3825 -0.5118 5.1184 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063085540.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:00 Heat of formation + Delta-G solvation = 23.977483 kcal Electronic energy + Delta-G solvation = -18742.817176 eV Core-core repulsion = 15866.603397 eV Total energy + Delta-G solvation = -2876.213779 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.104 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.49585 -37.19684 -36.10540 -34.43721 -32.31267 -30.57036 -30.34941 -28.51505 -25.98174 -25.40286 -23.16930 -22.68848 -20.85251 -18.95557 -17.20715 -17.00686 -16.77776 -15.44906 -14.87818 -14.64844 -14.18798 -13.99642 -13.51595 -13.46263 -13.21151 -12.81873 -12.64717 -12.28617 -11.79019 -11.42279 -11.30535 -11.25348 -11.00404 -10.69542 -10.64309 -10.48179 -10.22157 -9.93656 -9.71282 -9.51806 -8.91494 -8.58855 -8.42263 -7.46519 -7.05953 -5.97631 -4.01223 1.42031 1.64899 2.56593 3.52697 3.57793 3.68705 3.81200 3.87695 4.63698 4.92399 5.03320 5.15634 5.29640 5.50262 5.68424 5.71575 5.87943 5.97452 6.17974 6.22888 6.25898 6.38951 6.39871 6.45635 6.48808 6.63695 6.77908 6.81337 6.94522 7.09211 7.27008 7.39994 7.64661 7.75073 8.18183 8.39297 8.67812 9.04753 9.68081 11.13100 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.022722 B = 0.007321 C = 0.006269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.012962 B = 3823.776423 C = 4465.384801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.166 3.834 3 H 0.050 0.950 4 C -0.499 4.499 5 H 0.070 0.930 6 C 0.084 3.916 7 N -0.901 5.901 8 Si 0.887 3.113 9 H -0.255 1.255 10 H -0.307 1.307 11 H -0.267 1.267 12 N -0.523 5.523 13 C 0.039 3.961 14 C 0.086 3.914 15 C -0.110 4.110 16 C -0.057 4.057 17 C -0.197 4.197 18 C 0.216 3.784 19 N -0.880 5.880 20 C -0.195 4.195 21 C 0.032 3.968 22 Cl -0.058 7.058 23 H 0.046 0.954 24 H 0.027 0.973 25 H 0.049 0.951 26 H 0.262 0.738 27 H 0.008 0.992 28 H 0.078 0.922 29 H 0.042 0.958 30 H 0.073 0.927 31 H 0.033 0.967 32 H 0.125 0.875 33 H 0.120 0.880 34 H 0.397 0.603 35 H 0.397 0.603 36 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.796 -0.290 19.102 19.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.061 3.939 3 H 0.068 0.932 4 C -0.538 4.538 5 H 0.088 0.912 6 C -0.120 4.120 7 N -0.538 5.538 8 Si 0.715 3.285 9 H -0.180 1.180 10 H -0.235 1.235 11 H -0.192 1.192 12 N -0.248 5.248 13 C -0.109 4.109 14 C -0.041 4.041 15 C -0.113 4.113 16 C -0.076 4.076 17 C -0.219 4.219 18 C 0.112 3.888 19 N -0.420 5.420 20 C -0.218 4.218 21 C 0.004 3.996 22 Cl -0.028 7.028 23 H 0.065 0.935 24 H 0.046 0.954 25 H 0.068 0.932 26 H 0.072 0.928 27 H 0.027 0.973 28 H 0.097 0.903 29 H 0.061 0.939 30 H 0.092 0.908 31 H 0.051 0.949 32 H 0.143 0.857 33 H 0.138 0.862 34 H 0.224 0.776 35 H 0.225 0.775 36 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -0.093 -0.189 18.793 18.794 hybrid contribution 0.116 0.404 0.684 0.803 sum 0.023 0.215 19.476 19.478 Atomic orbital electron populations 1.22325 1.00392 1.00653 0.99024 1.19976 0.89711 0.95720 0.88482 0.93176 1.20821 1.01772 1.23996 1.07165 0.91223 1.25006 0.97621 0.95478 0.93854 1.69941 1.19913 1.44544 1.19420 0.86694 0.80521 0.81662 0.79582 1.18000 1.23525 1.19249 1.62928 1.59445 1.01917 1.00470 1.22120 0.95634 0.91257 1.01886 1.21035 0.95651 0.98222 0.89223 1.19647 0.93009 1.00467 0.98227 1.20729 0.99403 0.94547 0.92969 1.20543 0.93597 1.06181 1.01614 1.17499 0.91473 0.92147 0.87720 1.42364 1.15643 1.53813 1.30147 1.20331 1.00593 1.03490 0.97416 1.20499 0.92496 0.94788 0.91788 1.98396 1.78120 1.61460 1.64867 0.93467 0.95370 0.93169 0.92817 0.97323 0.90318 0.93895 0.90845 0.94913 0.85680 0.86210 0.77566 0.77517 0.85690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.37 8.43 37.16 0.31 -3.06 16 2 C 0.17 3.91 1.71 -68.87 -0.12 3.79 16 3 H 0.05 1.25 5.63 -51.93 -0.29 0.95 16 4 C -0.50 -13.94 7.65 -34.44 -0.26 -14.20 16 5 H 0.07 2.11 8.05 -52.49 -0.42 1.68 16 6 C 0.08 2.46 5.47 -17.82 -0.10 2.36 16 7 N -0.90 -27.91 13.96 55.43 0.77 -27.14 16 8 Si 0.89 23.03 25.96 -169.99 -4.41 18.61 16 9 H -0.26 -6.54 6.54 56.52 0.37 -6.17 16 10 H -0.31 -8.10 7.11 56.52 0.40 -7.69 16 11 H -0.27 -6.69 6.14 56.52 0.35 -6.34 16 12 N -0.52 -11.25 4.28 -237.73 -1.02 -12.27 16 13 C 0.04 0.79 8.53 60.06 0.51 1.30 16 14 C 0.09 1.58 3.95 -4.97 -0.02 1.56 16 15 C -0.11 -1.83 4.57 -104.55 -0.48 -2.31 16 16 C -0.06 -0.80 8.74 -39.62 -0.35 -1.14 16 17 C -0.20 -2.41 9.90 -39.37 -0.39 -2.80 16 18 C 0.22 2.64 6.75 -83.79 -0.57 2.08 16 19 N -0.88 -7.44 9.09 32.41 0.29 -7.15 16 20 C -0.19 -2.77 9.68 -39.35 -0.38 -3.15 16 21 C 0.03 0.54 6.31 -39.53 -0.25 0.29 16 22 Cl -0.06 -1.07 25.59 -51.86 -1.33 -2.40 16 23 H 0.05 0.95 6.76 -51.93 -0.35 0.60 16 24 H 0.03 0.50 6.52 -51.93 -0.34 0.16 16 25 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 26 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 27 H 0.01 0.16 6.62 -51.93 -0.34 -0.19 16 28 H 0.08 1.79 6.99 -51.93 -0.36 1.43 16 29 H 0.04 0.80 6.66 -51.93 -0.35 0.45 16 30 H 0.07 1.39 7.21 -51.93 -0.37 1.02 16 31 H 0.03 0.56 6.68 -51.93 -0.35 0.21 16 32 H 0.13 1.55 8.03 -52.49 -0.42 1.13 16 33 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 34 H 0.40 2.74 8.84 -40.82 -0.36 2.38 16 35 H 0.40 2.52 8.84 -40.82 -0.36 2.15 16 36 H 0.13 1.58 8.06 -52.48 -0.42 1.16 16 LS Contribution 299.73 15.07 4.52 4.52 Total: -1.00 -31.38 299.73 -8.07 -39.45 By element: Atomic # 1 Polarization: 6.45 SS G_CDS: -4.81 Total: 1.64 kcal Atomic # 6 Polarization: -13.18 SS G_CDS: -2.08 Total: -15.26 kcal Atomic # 7 Polarization: -46.61 SS G_CDS: 0.05 Total: -46.55 kcal Atomic # 14 Polarization: 23.03 SS G_CDS: -4.41 Total: 18.61 kcal Atomic # 17 Polarization: -1.07 SS G_CDS: -1.33 Total: -2.40 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -31.38 -8.07 -39.45 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063085540.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.425 kcal (2) G-P(sol) polarization free energy of solvation -31.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.448 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds