Wall clock time and date at job start Mon Mar 30 2020 06:46:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.47352 * 2 1 4 4 C 1.50704 * 109.47280 * 239.99996 * 2 1 3 5 5 H 1.07998 * 119.99399 * 334.99952 * 4 2 1 6 6 C 1.37875 * 120.00309 * 154.99594 * 4 2 1 7 7 N 1.31515 * 119.99986 * 185.12764 * 6 4 2 8 8 Si 1.86799 * 120.00055 * 5.13425 * 6 4 2 9 9 H 1.48502 * 109.47236 * 84.82313 * 8 6 4 10 10 H 1.48494 * 109.47132 * 204.82622 * 8 6 4 11 11 H 1.48504 * 109.46939 * 324.82837 * 8 6 4 12 12 N 1.46896 * 109.47440 * 120.00045 * 2 1 3 13 13 C 1.46898 * 111.00258 * 58.95239 * 12 2 1 14 14 C 1.46906 * 110.99872 * 294.99773 * 12 2 1 15 15 C 1.50698 * 109.46931 * 189.99732 * 14 12 2 16 16 C 1.38288 * 119.93240 * 259.72110 * 15 14 12 17 17 C 1.38091 * 120.08469 * 179.76526 * 16 15 14 18 18 C 1.38945 * 119.95321 * 0.51865 * 17 16 15 19 19 N 1.39672 * 120.06777 * 179.71870 * 18 17 16 20 20 C 1.38865 * 119.86084 * 359.73680 * 18 17 16 21 21 C 1.38240 * 119.91357 * 0.02562 * 20 18 17 22 22 Cl 1.73605 * 119.97359 * 179.97438 * 21 20 18 23 23 H 1.09001 * 109.47132 * 174.94504 * 1 2 3 24 24 H 1.09003 * 109.46854 * 294.93770 * 1 2 3 25 25 H 1.08991 * 109.47289 * 54.93816 * 1 2 3 26 26 H 0.96997 * 119.99587 * 179.97438 * 7 6 4 27 27 H 1.09004 * 109.46981 * 296.05290 * 13 12 2 28 28 H 1.08999 * 109.47003 * 56.04474 * 13 12 2 29 29 H 1.08993 * 109.47521 * 176.04944 * 13 12 2 30 30 H 1.08994 * 109.47317 * 310.00182 * 14 12 2 31 31 H 1.09001 * 109.46735 * 70.00199 * 14 12 2 32 32 H 1.07999 * 119.95446 * 0.03222 * 16 15 14 33 33 H 1.08001 * 120.02262 * 180.23427 * 17 16 15 34 34 H 0.96996 * 120.00076 * 180.02562 * 19 18 17 35 35 H 0.97003 * 120.00101 * 0.02562 * 19 18 17 36 36 H 1.08007 * 120.03933 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 1.4131 -1.4486 -1.7184 6 6 3.2824 -0.4180 -1.7333 7 7 3.6808 -0.9622 -2.8624 8 14 4.4102 0.7511 -0.8109 9 1 5.1570 0.0002 0.2301 10 1 5.3703 1.3662 -1.7621 11 1 3.5996 1.8161 -0.1674 12 7 2.0197 -0.6925 1.1994 13 6 1.5284 -2.0761 1.2460 14 6 1.6488 0.0392 2.4180 15 6 2.3680 -0.5571 3.6005 16 6 1.7046 -1.4302 4.4431 17 6 2.3621 -1.9822 5.5247 18 6 3.6886 -1.6516 5.7729 19 7 4.3541 -2.2040 6.8696 20 6 4.3512 -0.7705 4.9284 21 6 3.6891 -0.2250 3.8444 22 17 4.5157 0.8772 2.7881 23 1 -0.3633 -1.0237 -0.0905 24 1 -0.3633 0.4333 0.9319 25 1 -0.3633 0.5903 -0.8411 26 1 4.5601 -0.7562 -3.2163 27 1 0.4420 -2.0730 1.3347 28 1 1.8167 -2.5950 0.3318 29 1 1.9618 -2.5868 2.1058 30 1 1.9298 1.0870 2.3125 31 1 0.5723 -0.0345 2.5726 32 1 0.6723 -1.6840 4.2524 33 1 1.8441 -2.6669 6.1799 34 1 5.2800 -1.9722 7.0421 35 1 3.8903 -2.8195 7.4587 36 1 5.3825 -0.5118 5.1184 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063085540.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:59 Heat of formation + Delta-G solvation = 1.889703 kcal Electronic energy + Delta-G solvation = -18743.774974 eV Core-core repulsion = 15866.603397 eV Total energy + Delta-G solvation = -2877.171577 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.104 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.60738 -38.75783 -37.37577 -35.56970 -34.34894 -31.92374 -31.57643 -29.94318 -27.52515 -27.25194 -24.67194 -23.74911 -22.10802 -20.73561 -18.93141 -18.16213 -17.87938 -16.90150 -16.36153 -16.04668 -15.79005 -15.27588 -14.99465 -14.70231 -14.59848 -14.42605 -14.14590 -14.00581 -13.20824 -13.12322 -12.75301 -12.67058 -12.50895 -12.40863 -12.15579 -12.00114 -11.76084 -11.57855 -11.45336 -11.15609 -10.94000 -10.65710 -9.65722 -8.74896 -8.36154 -8.23715 -6.28804 0.35717 0.57595 1.31466 1.40406 1.50737 1.61145 2.46825 2.77247 3.04182 3.09256 3.76318 3.96020 4.06722 4.21920 4.42683 4.50718 4.57712 4.67052 4.73125 4.77143 4.81514 4.91365 4.92748 4.99762 5.22453 5.23455 5.40443 5.41694 5.48049 5.64071 5.72543 5.82290 6.19689 6.56708 6.60922 6.72530 6.89652 7.03219 7.42939 8.90365 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.022722 B = 0.007321 C = 0.006269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.012962 B = 3823.776423 C = 4465.384801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.170 3.830 3 H 0.039 0.961 4 C -0.491 4.491 5 H 0.034 0.966 6 C 0.031 3.969 7 N -0.948 5.948 8 Si 0.941 3.059 9 H -0.252 1.252 10 H -0.314 1.314 11 H -0.254 1.254 12 N -0.540 5.540 13 C 0.050 3.950 14 C 0.094 3.906 15 C -0.138 4.138 16 C -0.054 4.054 17 C -0.193 4.193 18 C 0.226 3.774 19 N -0.863 5.863 20 C -0.207 4.207 21 C 0.015 3.985 22 Cl -0.088 7.088 23 H 0.045 0.955 24 H 0.058 0.942 25 H 0.047 0.953 26 H 0.262 0.738 27 H 0.027 0.973 28 H 0.042 0.958 29 H 0.060 0.940 30 H 0.062 0.938 31 H 0.050 0.950 32 H 0.143 0.857 33 H 0.152 0.848 34 H 0.406 0.594 35 H 0.411 0.589 36 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.515 -0.709 22.731 22.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.064 3.936 3 H 0.057 0.943 4 C -0.529 4.529 5 H 0.052 0.948 6 C -0.167 4.167 7 N -0.589 5.589 8 Si 0.768 3.232 9 H -0.176 1.176 10 H -0.242 1.242 11 H -0.179 1.179 12 N -0.264 5.264 13 C -0.098 4.098 14 C -0.033 4.033 15 C -0.141 4.141 16 C -0.073 4.073 17 C -0.215 4.215 18 C 0.119 3.881 19 N -0.403 5.403 20 C -0.231 4.231 21 C -0.013 4.013 22 Cl -0.059 7.059 23 H 0.064 0.936 24 H 0.077 0.923 25 H 0.066 0.934 26 H 0.070 0.930 27 H 0.045 0.955 28 H 0.061 0.939 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.068 0.932 32 H 0.161 0.839 33 H 0.170 0.830 34 H 0.236 0.764 35 H 0.242 0.758 36 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -0.815 -0.625 22.484 22.508 hybrid contribution 0.279 0.419 -0.271 0.572 sum -0.535 -0.205 22.213 22.221 Atomic orbital electron populations 1.22197 0.97946 1.00882 1.00575 1.19765 0.91638 0.94427 0.87813 0.94302 1.21061 1.00840 1.22519 1.08516 0.94757 1.25697 0.99222 0.97276 0.94525 1.70064 1.20495 1.47002 1.21344 0.85837 0.78829 0.80289 0.78219 1.17645 1.24237 1.17894 1.62556 1.60244 1.02528 1.01099 1.21987 0.96786 0.90320 1.00700 1.20947 0.96868 0.97254 0.88266 1.19553 0.93204 1.02600 0.98762 1.20934 1.00172 0.93484 0.92736 1.20890 0.93502 1.05857 1.01267 1.17607 0.91667 0.90995 0.87840 1.42366 1.16126 1.52959 1.28842 1.20464 1.01237 1.04096 0.97307 1.20680 0.92848 0.95311 0.92444 1.98374 1.78717 1.62653 1.66135 0.93560 0.92347 0.93407 0.92966 0.95486 0.93942 0.92178 0.91987 0.93165 0.83908 0.82986 0.76445 0.75845 0.84781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.18 8.43 71.98 0.61 -5.57 16 2 C 0.17 7.93 1.71 44.17 0.08 8.00 16 3 H 0.04 1.91 5.63 -2.38 -0.01 1.90 16 4 C -0.49 -28.09 7.65 25.60 0.20 -27.89 16 5 H 0.03 2.16 8.05 -2.91 -0.02 2.13 16 6 C 0.03 1.87 5.47 84.65 0.46 2.34 16 7 N -0.95 -60.93 13.96 21.45 0.30 -60.63 16 8 Si 0.94 48.72 25.96 68.60 1.78 50.50 16 9 H -0.25 -12.79 6.54 99.48 0.65 -12.14 16 10 H -0.31 -16.43 7.11 99.48 0.71 -15.72 16 11 H -0.25 -12.48 6.14 99.48 0.61 -11.87 16 12 N -0.54 -22.62 4.28 -906.04 -3.88 -26.50 16 13 C 0.05 1.96 8.53 127.69 1.09 3.05 16 14 C 0.09 3.25 3.95 85.56 0.34 3.59 16 15 C -0.14 -4.25 4.57 -19.82 -0.09 -4.34 16 16 C -0.05 -1.30 8.74 22.25 0.19 -1.10 16 17 C -0.19 -3.83 9.90 22.40 0.22 -3.61 16 18 C 0.23 4.65 6.75 38.21 0.26 4.91 16 19 N -0.86 -10.83 9.09 -51.38 -0.47 -11.30 16 20 C -0.21 -5.38 9.68 22.42 0.22 -5.16 16 21 C 0.01 0.47 6.31 22.30 0.14 0.62 16 22 Cl -0.09 -3.21 25.59 -2.72 -0.07 -3.28 16 23 H 0.05 1.81 6.76 -2.39 -0.02 1.79 16 24 H 0.06 1.94 6.52 -2.39 -0.02 1.92 16 25 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 26 H 0.26 15.98 8.31 -92.71 -0.77 15.21 16 27 H 0.03 0.94 6.62 -2.38 -0.02 0.92 16 28 H 0.04 1.94 6.99 -2.39 -0.02 1.93 16 29 H 0.06 2.12 6.66 -2.39 -0.02 2.10 16 30 H 0.06 2.27 7.21 -2.39 -0.02 2.25 16 31 H 0.05 1.54 6.68 -2.39 -0.02 1.52 16 32 H 0.14 2.88 8.03 -2.91 -0.02 2.85 16 33 H 0.15 2.04 8.06 -2.91 -0.02 2.02 16 34 H 0.41 3.99 8.84 -92.71 -0.82 3.17 16 35 H 0.41 3.20 8.84 -92.71 -0.82 2.38 16 36 H 0.13 3.11 8.06 -2.91 -0.02 3.09 16 Total: -1.00 -69.77 299.73 0.70 -69.07 By element: Atomic # 1 Polarization: 8.00 SS G_CDS: -0.68 Total: 7.32 kcal Atomic # 6 Polarization: -28.89 SS G_CDS: 3.71 Total: -25.18 kcal Atomic # 7 Polarization: -94.39 SS G_CDS: -4.04 Total: -98.43 kcal Atomic # 14 Polarization: 48.72 SS G_CDS: 1.78 Total: 50.50 kcal Atomic # 17 Polarization: -3.21 SS G_CDS: -0.07 Total: -3.28 kcal Total: -69.77 0.70 -69.07 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063085540.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.962 kcal (2) G-P(sol) polarization free energy of solvation -69.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.072 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds