Wall clock time and date at job start Mon Mar 30 2020 07:50:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.33641 * 122.75052 * 2 1 4 4 S 1.76196 * 107.92525 * 180.02562 * 3 2 1 5 5 C 1.70982 * 90.28033 * 0.02562 * 4 3 2 6 6 C 1.50705 * 124.91472 * 179.97438 * 5 4 3 7 7 C 1.52994 * 109.46919 * 270.02663 * 6 5 4 8 8 C 1.53007 * 109.47012 * 180.02562 * 7 6 5 9 9 C 1.52994 * 109.47012 * 180.02562 * 8 7 6 10 10 N 1.46906 * 109.46817 * 180.02562 * 9 8 7 11 11 C 1.46903 * 110.99973 * 179.97438 * 10 9 8 12 12 H 1.09003 * 109.46808 * 325.00209 * 11 10 9 13 13 C 1.53000 * 109.47120 * 84.99803 * 11 10 9 14 14 C 1.50694 * 109.47066 * 204.99831 * 11 10 9 15 15 H 1.08000 * 120.00563 * 359.97438 * 14 11 10 16 16 C 1.37885 * 119.99902 * 180.02562 * 14 11 10 17 17 N 1.31516 * 119.99913 * 359.97438 * 16 14 11 18 18 Si 1.86798 * 119.99766 * 179.97438 * 16 14 11 19 19 H 1.48506 * 109.46985 * 179.97438 * 18 16 14 20 20 H 1.48494 * 109.47276 * 299.99832 * 18 16 14 21 21 H 1.48498 * 109.47150 * 60.00043 * 18 16 14 22 22 N 1.29021 * 110.16991 * 0.23916 * 5 4 3 23 23 H 1.08996 * 109.47056 * 89.97169 * 1 2 3 24 24 H 1.09000 * 109.47525 * 209.97451 * 1 2 3 25 25 H 1.09002 * 109.46933 * 329.97812 * 1 2 3 26 26 H 1.08003 * 126.03670 * 0.04284 * 3 2 1 27 27 H 1.09001 * 109.47164 * 150.02466 * 6 5 4 28 28 H 1.09007 * 109.46712 * 30.02471 * 6 5 4 29 29 H 1.09001 * 109.47363 * 59.99924 * 7 6 5 30 30 H 1.08998 * 109.47442 * 299.99508 * 7 6 5 31 31 H 1.09001 * 109.47146 * 59.99757 * 8 7 6 32 32 H 1.09007 * 109.46637 * 299.99819 * 8 7 6 33 33 H 1.08993 * 109.47410 * 60.00199 * 9 8 7 34 34 H 1.08998 * 109.47442 * 299.99473 * 9 8 7 35 35 H 1.00894 * 111.00400 * 56.04110 * 10 9 8 36 36 H 1.08997 * 109.47359 * 180.02562 * 13 11 10 37 37 H 1.09007 * 109.47356 * 300.00024 * 13 11 10 38 38 H 1.09000 * 109.47156 * 59.99749 * 13 11 10 39 39 H 0.97001 * 119.99646 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2300 1.1240 0.0000 4 16 3.9333 0.6731 -0.0007 5 6 3.5039 -0.9819 -0.0018 6 6 4.4834 -2.1272 -0.0033 7 6 4.8144 -2.5131 -1.4463 8 6 5.8084 -3.6763 -1.4480 9 6 6.1399 -4.0618 -2.8909 10 7 7.0938 -5.1790 -2.8925 11 6 7.4355 -5.5777 -4.2645 12 1 6.5613 -5.4609 -4.9051 13 6 8.5707 -4.6936 -4.7847 14 6 7.8764 -7.0186 -4.2738 15 1 7.9008 -7.5820 -3.3527 16 6 8.2497 -7.6177 -5.4583 17 7 8.2205 -6.9316 -6.5800 18 14 8.7969 -9.4037 -5.4698 19 1 9.1422 -9.8067 -6.8567 20 1 9.9876 -9.5622 -4.5968 21 1 7.6952 -10.2622 -4.9651 22 7 2.2199 -1.1083 -0.0066 23 1 -0.3633 0.0005 -1.0276 24 1 -0.3634 -0.8902 0.5134 25 1 -0.3633 0.8898 0.5142 26 1 1.8392 2.1308 0.0007 27 1 4.0435 -2.9823 0.5098 28 1 5.3962 -1.8253 0.5105 29 1 5.2544 -1.6580 -1.9594 30 1 3.9018 -2.8150 -1.9602 31 1 5.3680 -4.5313 -0.9350 32 1 6.7212 -3.3748 -0.9340 33 1 6.5805 -3.2068 -3.4035 34 1 5.2274 -4.3631 -3.4053 35 1 6.7344 -5.9622 -2.3676 36 1 8.8240 -4.9890 -5.8028 37 1 8.2518 -3.6512 -4.7779 38 1 9.4448 -4.8102 -4.1440 39 1 8.4834 -7.3530 -7.4132 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000067406687.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:50:01 Heat of formation + Delta-G solvation = 17.376500 kcal Electronic energy + Delta-G solvation = -17252.050979 eV Core-core repulsion = 14513.427761 eV Total energy + Delta-G solvation = -2738.623218 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.07503 -36.67839 -35.01937 -32.89827 -31.68935 -29.58693 -27.90215 -27.18222 -25.22354 -23.99234 -21.84706 -20.85775 -19.90106 -19.66555 -17.79739 -16.44275 -15.65212 -15.44052 -15.17482 -14.77487 -14.16524 -13.84047 -13.78424 -13.52502 -13.02784 -12.84737 -12.76925 -12.33410 -12.16336 -11.60468 -11.52886 -11.33459 -11.30701 -10.93175 -10.75875 -10.66856 -10.46390 -10.15410 -10.06903 -9.88660 -9.74909 -9.58005 -8.88468 -8.79261 -8.45009 -7.22635 -6.00467 -4.06948 0.50216 1.17209 1.55415 2.57063 3.32543 3.36736 3.39610 3.83289 4.41592 4.64136 4.87775 4.94270 4.95124 5.00806 5.28906 5.30062 5.33251 5.39319 5.42158 5.60263 5.66558 5.82445 5.88843 6.00648 6.02884 6.17471 6.25304 6.57331 6.62838 6.92136 7.17088 7.27007 7.54340 7.57011 7.80268 7.93213 8.30423 8.42949 8.71540 9.04152 9.58856 11.05911 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.041778 B = 0.002637 C = 0.002592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.053716 B =10615.871038 C =10801.180955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.068 3.932 3 C -0.273 4.273 4 S 0.115 5.885 5 C 0.067 3.933 6 C -0.045 4.045 7 C -0.110 4.110 8 C -0.114 4.114 9 C 0.060 3.940 10 N -0.691 5.691 11 C 0.211 3.789 12 H 0.000 1.000 13 C -0.124 4.124 14 C -0.519 4.519 15 H 0.059 0.941 16 C 0.061 3.939 17 N -0.891 5.891 18 Si 0.897 3.103 19 H -0.287 1.287 20 H -0.276 1.276 21 H -0.278 1.278 22 N -0.475 5.475 23 H 0.075 0.925 24 H 0.076 0.924 25 H 0.073 0.927 26 H 0.174 0.826 27 H 0.095 0.905 28 H 0.087 0.913 29 H 0.064 0.936 30 H 0.067 0.933 31 H 0.060 0.940 32 H 0.069 0.931 33 H 0.062 0.938 34 H 0.017 0.983 35 H 0.329 0.671 36 H 0.080 0.920 37 H 0.003 0.997 38 H 0.031 0.969 39 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.741 16.091 13.624 24.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.064 4.064 3 C -0.412 4.412 4 S 0.370 5.630 5 C -0.212 4.212 6 C -0.086 4.086 7 C -0.150 4.150 8 C -0.152 4.152 9 C -0.070 4.070 10 N -0.322 5.322 11 C 0.103 3.897 12 H 0.017 0.983 13 C -0.182 4.182 14 C -0.557 4.557 15 H 0.077 0.923 16 C -0.141 4.141 17 N -0.530 5.530 18 Si 0.725 3.275 19 H -0.213 1.213 20 H -0.202 1.202 21 H -0.203 1.203 22 N -0.190 5.190 23 H 0.094 0.906 24 H 0.095 0.905 25 H 0.092 0.908 26 H 0.192 0.808 27 H 0.114 0.886 28 H 0.106 0.894 29 H 0.083 0.917 30 H 0.086 0.914 31 H 0.079 0.921 32 H 0.088 0.912 33 H 0.080 0.920 34 H 0.035 0.965 35 H 0.146 0.854 36 H 0.098 0.902 37 H 0.022 0.978 38 H 0.050 0.950 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -10.414 16.514 13.479 23.724 hybrid contribution -1.444 -1.240 -0.433 1.952 sum -11.858 15.273 13.046 23.325 Atomic orbital electron populations 1.20360 0.87193 1.03253 1.03019 1.20349 0.98301 0.86588 1.01162 1.26772 0.95257 1.03872 1.15277 1.84056 1.07314 1.03435 1.68164 1.27215 0.94066 0.98349 1.01537 1.20400 0.95122 0.93512 0.99603 1.21565 1.00200 0.99239 0.94000 1.21567 0.98434 0.96969 0.98219 1.21883 0.94199 0.96241 0.94664 1.60732 1.43033 1.10125 1.18264 1.19095 0.93627 0.93992 0.82975 0.98270 1.21712 0.98819 0.94898 1.02815 1.21245 1.45043 0.95622 0.93816 0.92274 1.24934 0.95497 0.98138 0.95507 1.69893 1.48271 1.36300 0.98501 0.86575 0.79159 0.84805 0.76948 1.21307 1.20174 1.20335 1.66149 1.04607 1.31501 1.16745 0.90591 0.90546 0.90829 0.80826 0.88630 0.89416 0.91706 0.91429 0.92117 0.91199 0.91989 0.96480 0.85383 0.90161 0.97761 0.94990 0.92889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.60 10.31 36.01 0.37 -0.23 16 2 C 0.07 0.73 6.74 -84.22 -0.57 0.16 16 3 C -0.27 -2.51 11.13 29.12 0.32 -2.19 16 4 S 0.11 1.10 23.18 -107.50 -2.49 -1.39 16 5 C 0.07 0.76 6.64 -13.46 -0.09 0.67 16 6 C -0.05 -0.47 5.80 -27.88 -0.16 -0.63 16 7 C -0.11 -1.32 5.20 -26.73 -0.14 -1.46 16 8 C -0.11 -1.57 5.47 -26.73 -0.15 -1.72 16 9 C 0.06 1.09 5.48 -3.82 -0.02 1.07 16 10 N -0.69 -15.01 6.30 -107.95 -0.68 -15.69 16 11 C 0.21 5.47 2.60 -68.87 -0.18 5.29 16 12 H 0.00 -0.01 7.80 -51.93 -0.40 -0.41 16 13 C -0.12 -3.16 9.19 37.16 0.34 -2.82 16 14 C -0.52 -14.47 8.59 -34.44 -0.30 -14.77 16 15 H 0.06 1.62 7.62 -52.49 -0.40 1.22 16 16 C 0.06 1.71 5.30 -17.82 -0.09 1.61 16 17 N -0.89 -25.85 11.32 55.43 0.63 -25.22 16 18 Si 0.90 21.47 29.54 -169.99 -5.02 16.45 16 19 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 20 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 21 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 22 N -0.48 -6.04 10.53 -8.05 -0.08 -6.13 16 23 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 24 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 25 H 0.07 0.40 8.12 -51.93 -0.42 -0.02 16 26 H 0.17 1.12 8.06 -52.48 -0.42 0.69 16 27 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 28 H 0.09 0.76 8.14 -51.92 -0.42 0.34 16 29 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 31 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.07 0.95 8.14 -51.92 -0.42 0.52 16 33 H 0.06 1.15 7.44 -51.93 -0.39 0.76 16 34 H 0.02 0.32 8.05 -51.93 -0.42 -0.10 16 35 H 0.33 6.94 8.22 -39.30 -0.32 6.62 16 36 H 0.08 2.21 6.07 -51.93 -0.32 1.90 16 37 H 0.00 0.08 7.46 -51.93 -0.39 -0.31 16 38 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 335.07 15.07 5.05 5.05 Total: -1.00 -30.48 335.07 -9.68 -40.16 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: -6.42 Total: 1.78 kcal Atomic # 6 Polarization: -14.35 SS G_CDS: -0.66 Total: -15.01 kcal Atomic # 7 Polarization: -46.90 SS G_CDS: -0.14 Total: -47.03 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Atomic # 16 Polarization: 1.10 SS G_CDS: -2.49 Total: -1.39 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -30.48 -9.68 -40.16 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067406687.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.535 kcal (2) G-P(sol) polarization free energy of solvation -30.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.159 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds