Wall clock time and date at job start Mon Mar 30 2020 07:50:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.33641 * 122.75052 * 2 1 4 4 S 1.76196 * 107.92525 * 180.02562 * 3 2 1 5 5 C 1.70982 * 90.28033 * 0.02562 * 4 3 2 6 6 C 1.50705 * 124.91472 * 179.97438 * 5 4 3 7 7 C 1.52994 * 109.46919 * 270.02663 * 6 5 4 8 8 C 1.53007 * 109.47012 * 180.02562 * 7 6 5 9 9 C 1.52994 * 109.47012 * 180.02562 * 8 7 6 10 10 N 1.46906 * 109.46817 * 180.02562 * 9 8 7 11 11 C 1.46903 * 110.99973 * 179.97438 * 10 9 8 12 12 H 1.09003 * 109.46808 * 325.00209 * 11 10 9 13 13 C 1.53000 * 109.47120 * 84.99803 * 11 10 9 14 14 C 1.50694 * 109.47066 * 204.99831 * 11 10 9 15 15 H 1.08000 * 120.00563 * 359.97438 * 14 11 10 16 16 C 1.37885 * 119.99902 * 180.02562 * 14 11 10 17 17 N 1.31516 * 119.99913 * 359.97438 * 16 14 11 18 18 Si 1.86798 * 119.99766 * 179.97438 * 16 14 11 19 19 H 1.48506 * 109.46985 * 179.97438 * 18 16 14 20 20 H 1.48494 * 109.47276 * 299.99832 * 18 16 14 21 21 H 1.48498 * 109.47150 * 60.00043 * 18 16 14 22 22 N 1.29021 * 110.16991 * 0.23916 * 5 4 3 23 23 H 1.08996 * 109.47056 * 89.97169 * 1 2 3 24 24 H 1.09000 * 109.47525 * 209.97451 * 1 2 3 25 25 H 1.09002 * 109.46933 * 329.97812 * 1 2 3 26 26 H 1.08003 * 126.03670 * 0.04284 * 3 2 1 27 27 H 1.09001 * 109.47164 * 150.02466 * 6 5 4 28 28 H 1.09007 * 109.46712 * 30.02471 * 6 5 4 29 29 H 1.09001 * 109.47363 * 59.99924 * 7 6 5 30 30 H 1.08998 * 109.47442 * 299.99508 * 7 6 5 31 31 H 1.09001 * 109.47146 * 59.99757 * 8 7 6 32 32 H 1.09007 * 109.46637 * 299.99819 * 8 7 6 33 33 H 1.08993 * 109.47410 * 60.00199 * 9 8 7 34 34 H 1.08998 * 109.47442 * 299.99473 * 9 8 7 35 35 H 1.00894 * 111.00400 * 56.04110 * 10 9 8 36 36 H 1.08997 * 109.47359 * 180.02562 * 13 11 10 37 37 H 1.09007 * 109.47356 * 300.00024 * 13 11 10 38 38 H 1.09000 * 109.47156 * 59.99749 * 13 11 10 39 39 H 0.97001 * 119.99646 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2300 1.1240 0.0000 4 16 3.9333 0.6731 -0.0007 5 6 3.5039 -0.9819 -0.0018 6 6 4.4834 -2.1272 -0.0033 7 6 4.8144 -2.5131 -1.4463 8 6 5.8084 -3.6763 -1.4480 9 6 6.1399 -4.0618 -2.8909 10 7 7.0938 -5.1790 -2.8925 11 6 7.4355 -5.5777 -4.2645 12 1 6.5613 -5.4609 -4.9051 13 6 8.5707 -4.6936 -4.7847 14 6 7.8764 -7.0186 -4.2738 15 1 7.9008 -7.5820 -3.3527 16 6 8.2497 -7.6177 -5.4583 17 7 8.2205 -6.9316 -6.5800 18 14 8.7969 -9.4037 -5.4698 19 1 9.1422 -9.8067 -6.8567 20 1 9.9876 -9.5622 -4.5968 21 1 7.6952 -10.2622 -4.9651 22 7 2.2199 -1.1083 -0.0066 23 1 -0.3633 0.0005 -1.0276 24 1 -0.3634 -0.8902 0.5134 25 1 -0.3633 0.8898 0.5142 26 1 1.8392 2.1308 0.0007 27 1 4.0435 -2.9823 0.5098 28 1 5.3962 -1.8253 0.5105 29 1 5.2544 -1.6580 -1.9594 30 1 3.9018 -2.8150 -1.9602 31 1 5.3680 -4.5313 -0.9350 32 1 6.7212 -3.3748 -0.9340 33 1 6.5805 -3.2068 -3.4035 34 1 5.2274 -4.3631 -3.4053 35 1 6.7344 -5.9622 -2.3676 36 1 8.8240 -4.9890 -5.8028 37 1 8.2518 -3.6512 -4.7779 38 1 9.4448 -4.8102 -4.1440 39 1 8.4834 -7.3530 -7.4132 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000067406687.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:50:00 Heat of formation + Delta-G solvation = -1.406722 kcal Electronic energy + Delta-G solvation = -17252.865480 eV Core-core repulsion = 14513.427761 eV Total energy + Delta-G solvation = -2739.437720 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.84674 -38.22243 -36.38370 -34.53188 -32.91918 -31.01030 -28.88596 -28.35860 -27.30362 -25.21608 -22.90561 -22.04234 -21.62289 -20.65782 -18.62822 -18.41662 -16.99480 -16.60848 -16.29436 -16.01014 -15.54184 -15.42230 -14.95637 -14.50443 -14.32275 -13.95536 -13.72472 -13.49545 -13.35823 -13.00129 -12.96860 -12.73492 -12.66935 -12.39619 -12.22682 -12.19850 -12.08631 -12.05088 -11.60943 -11.46914 -10.89443 -10.60082 -10.57145 -10.36516 -9.61557 -9.06090 -8.13624 -6.28393 -0.25894 0.43819 0.80651 1.42691 1.44941 1.52600 1.79006 2.41626 3.08679 3.14734 3.59259 3.95502 4.00374 4.09152 4.26477 4.36438 4.38373 4.55399 4.64485 4.71765 4.75213 4.80642 4.82891 4.87955 4.90334 5.02657 5.07384 5.09584 5.22919 5.34872 5.36171 5.40157 5.51180 5.67411 5.86238 6.21896 6.47583 6.78071 6.80973 7.01136 7.42211 8.92097 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.041778 B = 0.002637 C = 0.002592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.053716 B =10615.871038 C =10801.180955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.042 3.958 3 C -0.267 4.267 4 S 0.138 5.862 5 C 0.043 3.957 6 C -0.040 4.040 7 C -0.100 4.100 8 C -0.100 4.100 9 C 0.060 3.940 10 N -0.687 5.687 11 C 0.213 3.787 12 H -0.035 1.035 13 C -0.113 4.113 14 C -0.540 4.540 15 H 0.061 0.939 16 C 0.011 3.989 17 N -0.920 5.920 18 Si 0.965 3.035 19 H -0.284 1.284 20 H -0.269 1.269 21 H -0.270 1.270 22 N -0.506 5.506 23 H 0.079 0.921 24 H 0.069 0.931 25 H 0.097 0.903 26 H 0.202 0.798 27 H 0.094 0.906 28 H 0.107 0.893 29 H 0.067 0.933 30 H 0.052 0.948 31 H 0.067 0.933 32 H 0.079 0.921 33 H 0.056 0.944 34 H 0.005 0.995 35 H 0.333 0.667 36 H 0.056 0.944 37 H 0.021 0.979 38 H 0.029 0.971 39 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.813 16.718 14.922 25.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.090 4.090 3 C -0.406 4.406 4 S 0.393 5.607 5 C -0.234 4.234 6 C -0.081 4.081 7 C -0.140 4.140 8 C -0.138 4.138 9 C -0.070 4.070 10 N -0.318 5.318 11 C 0.104 3.896 12 H -0.018 1.018 13 C -0.172 4.172 14 C -0.578 4.578 15 H 0.079 0.921 16 C -0.189 4.189 17 N -0.559 5.559 18 Si 0.790 3.210 19 H -0.209 1.209 20 H -0.195 1.195 21 H -0.195 1.195 22 N -0.222 5.222 23 H 0.098 0.902 24 H 0.088 0.912 25 H 0.116 0.884 26 H 0.219 0.781 27 H 0.113 0.887 28 H 0.125 0.875 29 H 0.085 0.915 30 H 0.071 0.929 31 H 0.085 0.915 32 H 0.097 0.903 33 H 0.075 0.925 34 H 0.024 0.976 35 H 0.150 0.850 36 H 0.075 0.925 37 H 0.040 0.960 38 H 0.048 0.952 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -10.494 17.150 14.797 24.964 hybrid contribution -1.459 -1.340 -0.841 2.152 sum -11.953 15.810 13.956 24.240 Atomic orbital electron populations 1.20433 0.85560 1.04102 1.03503 1.20812 0.99631 0.86588 1.01945 1.27172 0.94968 1.04855 1.13577 1.83919 1.07503 1.01881 1.67380 1.27331 0.94049 0.99585 1.02449 1.20343 0.95862 0.93554 0.98325 1.21418 0.98883 0.98423 0.95287 1.21430 0.99385 0.97948 0.95033 1.21969 0.92756 0.94624 0.97619 1.60666 1.44492 1.10953 1.15691 1.18927 0.92353 0.93724 0.84563 1.01759 1.21541 0.98576 0.95826 1.01222 1.21591 1.45366 0.96742 0.94130 0.92079 1.25791 0.95429 1.02536 0.95095 1.70029 1.48783 1.38058 0.99023 0.85502 0.78913 0.79467 0.77084 1.20924 1.19453 1.19546 1.66167 1.05460 1.33069 1.17486 0.90233 0.91250 0.88448 0.78064 0.88714 0.87486 0.91463 0.92883 0.91470 0.90265 0.92504 0.97642 0.84991 0.92507 0.96000 0.95158 0.92807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.07 10.31 71.24 0.73 -0.34 16 2 C 0.04 0.84 6.74 41.52 0.28 1.12 16 3 C -0.27 -4.36 11.13 66.78 0.74 -3.62 16 4 S 0.14 2.39 23.18 -56.49 -1.31 1.08 16 5 C 0.04 0.95 6.64 88.52 0.59 1.53 16 6 C -0.04 -0.78 5.80 29.85 0.17 -0.61 16 7 C -0.10 -2.30 5.20 30.59 0.16 -2.14 16 8 C -0.10 -2.63 5.47 30.59 0.17 -2.46 16 9 C 0.06 2.16 5.48 86.30 0.47 2.63 16 10 N -0.69 -29.76 6.30 -495.46 -3.12 -32.88 16 11 C 0.21 11.22 2.60 44.17 0.11 11.33 16 12 H -0.04 -2.06 7.80 -2.39 -0.02 -2.08 16 13 C -0.11 -5.82 9.19 71.98 0.66 -5.16 16 14 C -0.54 -30.28 8.59 25.60 0.22 -30.06 16 15 H 0.06 3.32 7.62 -2.91 -0.02 3.30 16 16 C 0.01 0.59 5.30 84.66 0.45 1.04 16 17 N -0.92 -54.00 11.32 21.45 0.24 -53.76 16 18 Si 0.97 43.87 29.54 68.60 2.03 45.90 16 19 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 20 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 21 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 22 N -0.51 -12.57 10.53 -179.39 -1.89 -14.46 16 23 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 24 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 25 H 0.10 0.84 8.12 -2.39 -0.02 0.82 16 26 H 0.20 1.97 8.06 -2.91 -0.02 1.94 16 27 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 28 H 0.11 1.63 8.14 -2.38 -0.02 1.61 16 29 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 32 H 0.08 1.98 8.14 -2.38 -0.02 1.96 16 33 H 0.06 2.09 7.44 -2.39 -0.02 2.07 16 34 H 0.01 0.21 8.05 -2.39 -0.02 0.19 16 35 H 0.33 13.93 8.22 -89.70 -0.74 13.19 16 36 H 0.06 3.18 6.07 -2.39 -0.01 3.17 16 37 H 0.02 0.99 7.46 -2.38 -0.02 0.97 16 38 H 0.03 1.51 8.14 -2.39 -0.02 1.49 16 39 H 0.26 14.63 8.31 -92.71 -0.77 13.86 16 Total: -1.00 -65.27 335.07 1.00 -64.28 By element: Atomic # 1 Polarization: 16.28 SS G_CDS: 0.28 Total: 16.57 kcal Atomic # 6 Polarization: -31.49 SS G_CDS: 4.76 Total: -26.73 kcal Atomic # 7 Polarization: -96.33 SS G_CDS: -4.77 Total: -101.10 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.90 kcal Atomic # 16 Polarization: 2.39 SS G_CDS: -1.31 Total: 1.08 kcal Total: -65.27 1.00 -64.28 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067406687.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.872 kcal (2) G-P(sol) polarization free energy of solvation -65.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds