Wall clock time and date at job start Mon Mar 30 2020 07:50:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.33646 * 122.75179 * 2 1 4 4 S 1.76196 * 107.92665 * 180.02562 * 3 2 1 5 5 C 1.70979 * 90.28259 * 0.02562 * 4 3 2 6 6 C 1.50703 * 124.91582 * 179.97438 * 5 4 3 7 7 C 1.52996 * 109.47002 * 270.02344 * 6 5 4 8 8 C 1.52998 * 109.47113 * 179.97438 * 7 6 5 9 9 C 1.52996 * 109.47113 * 179.97438 * 8 7 6 10 10 N 1.46902 * 109.47211 * 180.02562 * 9 8 7 11 11 C 1.46899 * 111.00131 * 180.02562 * 10 9 8 12 12 H 1.09000 * 109.47652 * 34.99504 * 11 10 9 13 13 C 1.53009 * 109.46986 * 274.99873 * 11 10 9 14 14 C 1.50702 * 109.47505 * 154.99972 * 11 10 9 15 15 H 1.08002 * 119.99446 * 359.97438 * 14 11 10 16 16 C 1.37871 * 120.00072 * 180.02562 * 14 11 10 17 17 N 1.31516 * 119.99826 * 179.72119 * 16 14 11 18 18 Si 1.86800 * 120.00406 * 359.97438 * 16 14 11 19 19 H 1.48501 * 109.46758 * 269.72576 * 18 16 14 20 20 H 1.48499 * 109.47026 * 29.72423 * 18 16 14 21 21 H 1.48496 * 109.47474 * 149.72459 * 18 16 14 22 22 N 1.29026 * 110.16680 * 0.23986 * 5 4 3 23 23 H 1.09000 * 109.46850 * 89.97047 * 1 2 3 24 24 H 1.08999 * 109.46907 * 209.97246 * 1 2 3 25 25 H 1.08996 * 109.47032 * 329.97401 * 1 2 3 26 26 H 1.07997 * 126.03385 * 0.04090 * 3 2 1 27 27 H 1.08997 * 109.46881 * 150.02033 * 6 5 4 28 28 H 1.09002 * 109.46853 * 30.02201 * 6 5 4 29 29 H 1.09005 * 109.47005 * 59.99786 * 7 6 5 30 30 H 1.08997 * 109.47309 * 300.00101 * 7 6 5 31 31 H 1.08996 * 109.47271 * 59.99855 * 8 7 6 32 32 H 1.08997 * 109.47161 * 300.00248 * 8 7 6 33 33 H 1.08997 * 109.47556 * 60.00158 * 9 8 7 34 34 H 1.09002 * 109.47200 * 299.99701 * 9 8 7 35 35 H 1.00898 * 110.99883 * 303.94996 * 10 9 8 36 36 H 1.08994 * 109.46846 * 180.02562 * 13 11 10 37 37 H 1.09001 * 109.46592 * 299.99704 * 13 11 10 38 38 H 1.08990 * 109.47127 * 59.99831 * 13 11 10 39 39 H 0.96999 * 120.00128 * 180.27192 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2300 1.1240 0.0000 4 16 3.9333 0.6732 -0.0007 5 6 3.5040 -0.9819 -0.0018 6 6 4.4836 -2.1271 -0.0033 7 6 4.8145 -2.5131 -1.4463 8 6 5.8095 -3.6754 -1.4480 9 6 6.1399 -4.0618 -2.8910 10 7 7.0948 -5.1782 -2.8926 11 6 7.4364 -5.5768 -4.2645 12 1 7.4578 -4.6947 -4.9046 13 6 6.3866 -6.5600 -4.7864 14 6 8.7911 -6.2368 -4.2734 15 1 9.3433 -6.3486 -3.3519 16 6 9.3261 -6.6970 -5.4578 17 7 10.5107 -7.2681 -5.4663 18 14 8.3714 -6.5030 -7.0517 19 1 7.5187 -7.6997 -7.2667 20 1 7.5146 -5.2928 -6.9713 21 1 9.3217 -6.3624 -8.1840 22 7 2.2200 -1.1083 -0.0066 23 1 -0.3633 0.0005 -1.0277 24 1 -0.3633 -0.8902 0.5134 25 1 -0.3633 0.8897 0.5142 26 1 1.8392 2.1308 0.0006 27 1 4.0436 -2.9822 0.5098 28 1 5.3963 -1.8252 0.5105 29 1 5.2544 -1.6579 -1.9594 30 1 3.9018 -2.8149 -1.9601 31 1 5.3700 -4.5306 -0.9347 32 1 6.7221 -3.3731 -0.9343 33 1 6.5793 -3.2068 -3.4046 34 1 5.2271 -4.3643 -3.4042 35 1 7.9240 -4.9454 -2.3669 36 1 6.6404 -6.8561 -5.8041 37 1 6.3653 -7.4421 -4.1464 38 1 5.4068 -6.0827 -4.7800 39 1 10.8888 -7.5883 -6.3002 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000067406688.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:50:04 Heat of formation + Delta-G solvation = 25.665433 kcal Electronic energy + Delta-G solvation = -17318.611556 eV Core-core repulsion = 14580.347773 eV Total energy + Delta-G solvation = -2738.263783 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.11510 -36.86966 -35.18039 -32.89054 -31.81709 -30.11512 -28.08664 -27.53951 -25.19692 -24.06520 -21.90975 -20.95493 -19.94304 -19.78335 -17.83806 -16.72908 -15.86082 -15.48764 -15.22863 -15.12676 -14.09890 -14.02552 -13.81913 -13.43889 -13.20519 -12.99514 -12.83696 -12.60149 -12.20666 -12.10735 -11.88132 -11.57134 -11.47073 -11.20581 -10.90485 -10.71290 -10.52045 -10.35719 -10.07111 -9.84027 -9.63778 -9.46036 -9.01168 -8.90948 -8.60232 -7.47227 -6.09449 -4.09133 0.46123 1.13098 1.51356 2.53013 3.27712 3.36908 3.39477 3.78824 4.39208 4.57740 4.82324 4.87043 4.89024 4.96682 5.15947 5.24781 5.26591 5.35834 5.36286 5.48534 5.61878 5.71719 5.77959 5.89856 5.98492 6.04207 6.12678 6.37741 6.47372 6.50425 6.58698 6.75139 6.84109 7.41017 7.52895 7.59521 7.96273 8.37545 8.63297 8.95307 9.53091 11.03564 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.038480 B = 0.002800 C = 0.002745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.466899 B = 9996.661564 C =10199.075100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.068 3.932 3 C -0.272 4.272 4 S 0.114 5.886 5 C 0.066 3.934 6 C -0.046 4.046 7 C -0.110 4.110 8 C -0.114 4.114 9 C 0.057 3.943 10 N -0.680 5.680 11 C 0.181 3.819 12 H 0.000 1.000 13 C -0.137 4.137 14 C -0.520 4.520 15 H 0.079 0.921 16 C 0.071 3.929 17 N -0.899 5.899 18 Si 0.891 3.109 19 H -0.278 1.278 20 H -0.269 1.269 21 H -0.298 1.298 22 N -0.475 5.475 23 H 0.075 0.925 24 H 0.076 0.924 25 H 0.073 0.927 26 H 0.174 0.826 27 H 0.097 0.903 28 H 0.087 0.913 29 H 0.062 0.938 30 H 0.069 0.931 31 H 0.072 0.928 32 H 0.062 0.938 33 H 0.019 0.981 34 H 0.062 0.938 35 H 0.338 0.662 36 H 0.036 0.964 37 H 0.057 0.943 38 H 0.025 0.975 39 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.030 17.414 11.667 27.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.064 4.064 3 C -0.411 4.411 4 S 0.370 5.630 5 C -0.212 4.212 6 C -0.086 4.086 7 C -0.150 4.150 8 C -0.152 4.152 9 C -0.073 4.073 10 N -0.312 5.312 11 C 0.072 3.928 12 H 0.017 0.983 13 C -0.195 4.195 14 C -0.558 4.558 15 H 0.097 0.903 16 C -0.132 4.132 17 N -0.537 5.537 18 Si 0.722 3.278 19 H -0.205 1.205 20 H -0.194 1.194 21 H -0.226 1.226 22 N -0.189 5.189 23 H 0.094 0.906 24 H 0.095 0.905 25 H 0.092 0.908 26 H 0.192 0.808 27 H 0.115 0.885 28 H 0.106 0.894 29 H 0.081 0.919 30 H 0.087 0.913 31 H 0.091 0.909 32 H 0.080 0.920 33 H 0.037 0.963 34 H 0.081 0.919 35 H 0.156 0.844 36 H 0.054 0.946 37 H 0.077 0.923 38 H 0.044 0.956 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -16.640 16.880 11.623 26.400 hybrid contribution -0.801 0.851 -1.277 1.731 sum -17.441 17.731 10.346 26.937 Atomic orbital electron populations 1.20360 0.87169 1.03286 1.03010 1.20353 0.98310 0.86577 1.01165 1.26777 0.95229 1.03890 1.15219 1.84066 1.07351 1.03445 1.68171 1.27207 0.94072 0.98325 1.01618 1.20392 0.95157 0.93589 0.99508 1.21560 1.00265 0.99042 0.94139 1.21552 0.98480 0.97302 0.97904 1.21940 0.97445 0.92734 0.95160 1.60516 1.17597 1.36433 1.16613 1.19526 0.94498 0.93526 0.85235 0.98282 1.22065 0.97348 1.00846 0.99224 1.21121 1.00049 1.38638 0.95963 0.90348 1.24939 0.94830 0.94479 0.98909 1.69893 1.16581 1.39936 1.27302 0.86793 0.78995 0.78979 0.83029 1.20482 1.19403 1.22552 1.66149 1.04593 1.31502 1.16698 0.90601 0.90522 0.90814 0.80816 0.88489 0.89445 0.91874 0.91259 0.90926 0.91975 0.96263 0.91930 0.84365 0.94564 0.92341 0.95592 0.92587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.57 10.31 36.01 0.37 -0.20 16 2 C 0.07 0.70 6.74 -84.22 -0.57 0.13 16 3 C -0.27 -2.41 11.13 29.12 0.32 -2.08 16 4 S 0.11 1.05 23.18 -107.50 -2.49 -1.44 16 5 C 0.07 0.72 6.64 -13.46 -0.09 0.63 16 6 C -0.05 -0.45 5.80 -27.88 -0.16 -0.61 16 7 C -0.11 -1.23 5.20 -26.73 -0.14 -1.36 16 8 C -0.11 -1.47 5.47 -26.73 -0.15 -1.61 16 9 C 0.06 0.95 5.48 -3.83 -0.02 0.93 16 10 N -0.68 -13.97 6.30 -107.95 -0.68 -14.65 16 11 C 0.18 4.37 2.19 -68.86 -0.15 4.22 16 12 H 0.00 -0.01 6.85 -51.93 -0.36 -0.36 16 13 C -0.14 -3.14 8.89 37.16 0.33 -2.81 16 14 C -0.52 -14.68 9.17 -34.44 -0.32 -15.00 16 15 H 0.08 2.37 7.86 -52.49 -0.41 1.96 16 16 C 0.07 2.05 5.45 -17.82 -0.10 1.95 16 17 N -0.90 -27.57 13.96 55.43 0.77 -26.80 16 18 Si 0.89 22.33 24.37 -169.99 -4.14 18.19 16 19 H -0.28 -6.80 6.88 56.52 0.39 -6.41 16 20 H -0.27 -6.51 6.52 56.52 0.37 -6.14 16 21 H -0.30 -7.42 7.11 56.52 0.40 -7.02 16 22 N -0.47 -5.81 10.53 -8.05 -0.08 -5.90 16 23 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 24 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.07 0.38 8.12 -51.93 -0.42 -0.05 16 26 H 0.17 1.06 8.06 -52.49 -0.42 0.64 16 27 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 28 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 29 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.02 0.33 8.05 -51.93 -0.42 -0.09 16 34 H 0.06 1.06 7.44 -51.93 -0.39 0.67 16 35 H 0.34 6.86 8.22 -39.29 -0.32 6.54 16 36 H 0.04 0.85 3.28 -51.93 -0.17 0.68 16 37 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 38 H 0.03 0.52 7.45 -51.93 -0.39 0.13 16 39 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 328.25 15.07 4.95 4.95 Total: -1.00 -31.53 328.25 -8.63 -40.16 By element: Atomic # 1 Polarization: 7.58 SS G_CDS: -6.28 Total: 1.30 kcal Atomic # 6 Polarization: -15.14 SS G_CDS: -0.66 Total: -15.81 kcal Atomic # 7 Polarization: -47.35 SS G_CDS: 0.01 Total: -47.34 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -4.14 Total: 18.19 kcal Atomic # 16 Polarization: 1.05 SS G_CDS: -2.49 Total: -1.44 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -31.53 -8.63 -40.16 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067406688.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.822 kcal (2) G-P(sol) polarization free energy of solvation -31.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.157 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds