Wall clock time and date at job start Mon Mar 30 2020 07:50:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.33646 * 122.75179 * 2 1 4 4 S 1.76196 * 107.92665 * 180.02562 * 3 2 1 5 5 C 1.70979 * 90.28259 * 0.02562 * 4 3 2 6 6 C 1.50703 * 124.91582 * 179.97438 * 5 4 3 7 7 C 1.52996 * 109.47002 * 270.02344 * 6 5 4 8 8 C 1.52998 * 109.47113 * 179.97438 * 7 6 5 9 9 C 1.52996 * 109.47113 * 179.97438 * 8 7 6 10 10 N 1.46902 * 109.47211 * 180.02562 * 9 8 7 11 11 C 1.46899 * 111.00131 * 180.02562 * 10 9 8 12 12 H 1.09000 * 109.47652 * 34.99504 * 11 10 9 13 13 C 1.53009 * 109.46986 * 274.99873 * 11 10 9 14 14 C 1.50702 * 109.47505 * 154.99972 * 11 10 9 15 15 H 1.08002 * 119.99446 * 359.97438 * 14 11 10 16 16 C 1.37871 * 120.00072 * 180.02562 * 14 11 10 17 17 N 1.31516 * 119.99826 * 179.72119 * 16 14 11 18 18 Si 1.86800 * 120.00406 * 359.97438 * 16 14 11 19 19 H 1.48501 * 109.46758 * 269.72576 * 18 16 14 20 20 H 1.48499 * 109.47026 * 29.72423 * 18 16 14 21 21 H 1.48496 * 109.47474 * 149.72459 * 18 16 14 22 22 N 1.29026 * 110.16680 * 0.23986 * 5 4 3 23 23 H 1.09000 * 109.46850 * 89.97047 * 1 2 3 24 24 H 1.08999 * 109.46907 * 209.97246 * 1 2 3 25 25 H 1.08996 * 109.47032 * 329.97401 * 1 2 3 26 26 H 1.07997 * 126.03385 * 0.04090 * 3 2 1 27 27 H 1.08997 * 109.46881 * 150.02033 * 6 5 4 28 28 H 1.09002 * 109.46853 * 30.02201 * 6 5 4 29 29 H 1.09005 * 109.47005 * 59.99786 * 7 6 5 30 30 H 1.08997 * 109.47309 * 300.00101 * 7 6 5 31 31 H 1.08996 * 109.47271 * 59.99855 * 8 7 6 32 32 H 1.08997 * 109.47161 * 300.00248 * 8 7 6 33 33 H 1.08997 * 109.47556 * 60.00158 * 9 8 7 34 34 H 1.09002 * 109.47200 * 299.99701 * 9 8 7 35 35 H 1.00898 * 110.99883 * 303.94996 * 10 9 8 36 36 H 1.08994 * 109.46846 * 180.02562 * 13 11 10 37 37 H 1.09001 * 109.46592 * 299.99704 * 13 11 10 38 38 H 1.08990 * 109.47127 * 59.99831 * 13 11 10 39 39 H 0.96999 * 120.00128 * 180.27192 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2300 1.1240 0.0000 4 16 3.9333 0.6732 -0.0007 5 6 3.5040 -0.9819 -0.0018 6 6 4.4836 -2.1271 -0.0033 7 6 4.8145 -2.5131 -1.4463 8 6 5.8095 -3.6754 -1.4480 9 6 6.1399 -4.0618 -2.8910 10 7 7.0948 -5.1782 -2.8926 11 6 7.4364 -5.5768 -4.2645 12 1 7.4578 -4.6947 -4.9046 13 6 6.3866 -6.5600 -4.7864 14 6 8.7911 -6.2368 -4.2734 15 1 9.3433 -6.3486 -3.3519 16 6 9.3261 -6.6970 -5.4578 17 7 10.5107 -7.2681 -5.4663 18 14 8.3714 -6.5030 -7.0517 19 1 7.5187 -7.6997 -7.2667 20 1 7.5146 -5.2928 -6.9713 21 1 9.3217 -6.3624 -8.1840 22 7 2.2200 -1.1083 -0.0066 23 1 -0.3633 0.0005 -1.0277 24 1 -0.3633 -0.8902 0.5134 25 1 -0.3633 0.8897 0.5142 26 1 1.8392 2.1308 0.0006 27 1 4.0436 -2.9822 0.5098 28 1 5.3963 -1.8252 0.5105 29 1 5.2544 -1.6579 -1.9594 30 1 3.9018 -2.8149 -1.9601 31 1 5.3700 -4.5306 -0.9347 32 1 6.7221 -3.3731 -0.9343 33 1 6.5793 -3.2068 -3.4046 34 1 5.2271 -4.3643 -3.4042 35 1 7.9240 -4.9454 -2.3669 36 1 6.6404 -6.8561 -5.8041 37 1 6.3653 -7.4421 -4.1464 38 1 5.4068 -6.0827 -4.7800 39 1 10.8888 -7.5883 -6.3002 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000067406688.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:50:03 Heat of formation + Delta-G solvation = 4.361150 kcal Electronic energy + Delta-G solvation = -17319.535379 eV Core-core repulsion = 14580.347773 eV Total energy + Delta-G solvation = -2739.187606 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.84588 -38.34482 -36.42231 -34.54753 -33.13719 -31.46879 -29.11298 -28.40099 -27.18725 -25.23757 -22.89499 -22.05822 -21.61505 -20.66032 -18.86459 -18.51832 -17.36775 -16.53391 -16.28251 -16.02981 -15.60042 -15.43457 -15.05700 -14.60458 -14.43980 -14.13014 -13.95965 -13.72277 -13.51409 -13.31757 -13.08243 -12.80845 -12.72479 -12.35453 -12.22804 -12.16150 -12.03199 -11.87385 -11.48347 -11.41304 -11.04045 -10.78367 -10.60100 -10.36744 -9.61779 -9.14070 -8.32583 -6.37117 -0.25951 0.43513 0.80515 1.30024 1.34068 1.44818 1.79046 2.29763 3.02393 3.07856 3.48617 3.92315 4.01178 4.07475 4.26736 4.34710 4.39440 4.49140 4.57068 4.61414 4.70321 4.75272 4.76071 4.80473 4.82925 4.90870 4.93662 5.00019 5.02669 5.11432 5.33896 5.39218 5.43034 5.50642 5.62550 5.99817 6.51566 6.64910 6.80752 6.84560 7.29808 8.83814 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.038480 B = 0.002800 C = 0.002745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.466899 B = 9996.661564 C =10199.075100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.042 3.958 3 C -0.267 4.267 4 S 0.134 5.866 5 C 0.045 3.955 6 C -0.042 4.042 7 C -0.100 4.100 8 C -0.103 4.103 9 C 0.056 3.944 10 N -0.684 5.684 11 C 0.184 3.816 12 H -0.006 1.006 13 C -0.134 4.134 14 C -0.525 4.525 15 H 0.042 0.958 16 C 0.014 3.986 17 N -0.945 5.945 18 Si 0.953 3.047 19 H -0.266 1.266 20 H -0.253 1.253 21 H -0.296 1.296 22 N -0.504 5.504 23 H 0.080 0.920 24 H 0.069 0.931 25 H 0.096 0.904 26 H 0.202 0.798 27 H 0.095 0.905 28 H 0.104 0.896 29 H 0.066 0.934 30 H 0.058 0.942 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.019 0.981 34 H 0.062 0.938 35 H 0.337 0.663 36 H 0.031 0.969 37 H 0.051 0.949 38 H 0.054 0.946 39 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.938 19.139 11.522 29.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.089 4.089 3 C -0.406 4.406 4 S 0.390 5.610 5 C -0.233 4.233 6 C -0.082 4.082 7 C -0.139 4.139 8 C -0.141 4.141 9 C -0.073 4.073 10 N -0.315 5.315 11 C 0.074 3.926 12 H 0.012 0.988 13 C -0.192 4.192 14 C -0.563 4.563 15 H 0.060 0.940 16 C -0.184 4.184 17 N -0.585 5.585 18 Si 0.780 3.220 19 H -0.192 1.192 20 H -0.177 1.177 21 H -0.224 1.224 22 N -0.220 5.220 23 H 0.099 0.901 24 H 0.088 0.912 25 H 0.115 0.885 26 H 0.219 0.781 27 H 0.113 0.887 28 H 0.123 0.877 29 H 0.085 0.915 30 H 0.077 0.923 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.037 0.963 34 H 0.081 0.919 35 H 0.155 0.845 36 H 0.049 0.951 37 H 0.070 0.930 38 H 0.073 0.927 39 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -18.572 18.615 11.498 28.699 hybrid contribution -0.177 0.373 -1.129 1.202 sum -18.749 18.988 10.370 28.628 Atomic orbital electron populations 1.20433 0.85539 1.04085 1.03544 1.20814 0.99628 0.86572 1.01883 1.27163 0.94923 1.04857 1.13635 1.83947 1.07584 1.02037 1.67475 1.27331 0.94056 0.99482 1.02407 1.20352 0.95774 0.93537 0.98572 1.21414 0.99133 0.98256 0.95136 1.21434 0.99387 0.97973 0.95316 1.22050 0.96179 0.91328 0.97765 1.60495 1.17983 1.38567 1.14460 1.19386 0.92736 0.93229 0.87218 0.98828 1.21987 0.98305 1.00368 0.98556 1.21417 1.01848 1.38426 0.94649 0.93978 1.25800 0.95703 0.94219 1.02684 1.70033 1.18501 1.41574 1.28432 0.85792 0.77891 0.79936 0.78407 1.19183 1.17675 1.22405 1.66169 1.05412 1.32998 1.17462 0.90141 0.91222 0.88540 0.78141 0.88705 0.87743 0.91544 0.92299 0.91034 0.91040 0.96286 0.91919 0.84539 0.95062 0.92987 0.92693 0.92396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.99 10.31 71.24 0.73 -0.26 16 2 C 0.04 0.81 6.74 41.52 0.28 1.09 16 3 C -0.27 -4.13 11.13 66.78 0.74 -3.38 16 4 S 0.13 2.21 23.18 -56.49 -1.31 0.90 16 5 C 0.04 0.92 6.64 88.52 0.59 1.51 16 6 C -0.04 -0.75 5.80 29.85 0.17 -0.58 16 7 C -0.10 -2.05 5.20 30.59 0.16 -1.89 16 8 C -0.10 -2.48 5.47 30.59 0.17 -2.31 16 9 C 0.06 1.78 5.48 86.30 0.47 2.26 16 10 N -0.68 -27.53 6.30 -495.43 -3.12 -30.66 16 11 C 0.18 8.72 2.19 44.17 0.10 8.82 16 12 H -0.01 -0.28 6.85 -2.39 -0.02 -0.30 16 13 C -0.13 -5.89 8.89 71.99 0.64 -5.25 16 14 C -0.53 -30.11 9.17 25.60 0.23 -29.87 16 15 H 0.04 2.65 7.86 -2.91 -0.02 2.62 16 16 C 0.01 0.81 5.45 84.65 0.46 1.27 16 17 N -0.95 -59.16 13.96 21.45 0.30 -58.86 16 18 Si 0.95 45.46 24.37 68.60 1.67 47.14 16 19 H -0.27 -12.11 6.88 99.48 0.68 -11.43 16 20 H -0.25 -11.30 6.52 99.48 0.65 -10.65 16 21 H -0.30 -13.98 7.11 99.48 0.71 -13.27 16 22 N -0.50 -11.89 10.53 -179.39 -1.89 -13.78 16 23 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 24 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 25 H 0.10 0.75 8.12 -2.39 -0.02 0.73 16 26 H 0.20 1.81 8.06 -2.91 -0.02 1.79 16 27 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 28 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 29 H 0.07 1.33 8.14 -2.38 -0.02 1.31 16 30 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 32 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 33 H 0.02 0.61 8.05 -2.39 -0.02 0.59 16 34 H 0.06 1.99 7.44 -2.39 -0.02 1.97 16 35 H 0.34 13.65 8.22 -89.70 -0.74 12.91 16 36 H 0.03 1.38 3.28 -2.39 -0.01 1.38 16 37 H 0.05 2.31 8.14 -2.39 -0.02 2.29 16 38 H 0.05 2.06 7.45 -2.39 -0.02 2.04 16 39 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 Total: -1.00 -67.90 328.25 0.61 -67.29 By element: Atomic # 1 Polarization: 16.36 SS G_CDS: 0.21 Total: 16.57 kcal Atomic # 6 Polarization: -33.35 SS G_CDS: 4.75 Total: -28.60 kcal Atomic # 7 Polarization: -98.59 SS G_CDS: -4.71 Total: -103.30 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 1.67 Total: 47.14 kcal Atomic # 16 Polarization: 2.21 SS G_CDS: -1.31 Total: 0.90 kcal Total: -67.90 0.61 -67.29 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067406688.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.654 kcal (2) G-P(sol) polarization free energy of solvation -67.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.293 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds