Wall clock time and date at job start Mon Mar 30 2020 07:18:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 109.47265 * 2 1 4 4 O 1.42901 * 109.47236 * 119.99718 * 2 1 3 5 5 C 1.35671 * 116.99851 * 276.22541 * 4 2 1 6 6 C 1.39313 * 119.81967 * 5.23583 * 5 4 2 7 7 C 1.36441 * 120.18366 * 180.02562 * 6 5 4 8 8 C 1.40831 * 119.81466 * 0.02562 * 7 6 5 9 9 C 1.41210 * 120.18015 * 179.97438 * 8 7 6 10 10 H 1.07997 * 119.99892 * 333.81457 * 9 8 7 11 11 C 1.39889 * 120.00029 * 153.82474 * 9 8 7 12 12 N 1.30884 * 120.00062 * 346.88032 * 11 9 8 13 13 Si 1.86803 * 119.99982 * 166.88206 * 11 9 8 14 14 H 1.48502 * 109.47255 * 59.99646 * 13 11 9 15 15 H 1.48501 * 109.47049 * 180.02562 * 13 11 9 16 16 H 1.48502 * 109.47079 * 299.99688 * 13 11 9 17 17 C 1.40839 * 119.63908 * 0.25136 * 8 7 6 18 18 C 1.36433 * 119.81296 * 359.46756 * 17 8 7 19 19 C 1.50698 * 109.47462 * 239.99780 * 2 1 3 20 20 C 1.38233 * 119.99935 * 279.73276 * 19 2 1 21 21 C 1.38242 * 120.00045 * 179.78694 * 20 19 2 22 22 C 1.38233 * 119.99749 * 0.43340 * 21 20 19 23 23 C 1.38233 * 120.00226 * 359.81745 * 22 21 20 24 24 C 1.38236 * 120.00141 * 99.99611 * 19 2 1 25 25 H 1.09003 * 109.47170 * 60.00329 * 1 2 3 26 26 H 1.08997 * 109.47265 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47486 * 300.00500 * 1 2 3 28 28 H 1.07993 * 119.90630 * 0.02562 * 6 5 4 29 29 H 1.07999 * 120.09213 * 179.97438 * 7 6 5 30 30 H 0.97003 * 119.99353 * 180.02562 * 12 11 9 31 31 H 1.08003 * 120.09092 * 179.72405 * 17 8 7 32 32 H 1.07998 * 119.90898 * 180.27333 * 18 17 8 33 33 H 1.08006 * 120.00249 * 359.97438 * 20 19 2 34 34 H 1.07996 * 120.00197 * 180.27016 * 21 20 19 35 35 H 1.08001 * 120.00237 * 179.83139 * 22 21 20 36 36 H 1.07996 * 120.00332 * 179.97438 * 23 22 21 37 37 H 1.07997 * 119.99770 * 359.97438 * 24 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.0880 0.0550 2.3084 6 6 1.6130 1.3645 2.3299 7 6 1.6920 2.1041 3.4738 8 6 2.2561 1.5404 4.6345 9 6 2.3422 2.2991 5.8224 10 1 2.3881 3.3769 5.7726 11 6 2.3682 1.6545 7.0637 12 7 2.0577 0.3859 7.1489 13 14 2.8459 2.6045 8.5995 14 1 1.8988 3.7306 8.7998 15 1 2.7964 1.7001 9.7763 16 1 4.2231 3.1377 8.4434 17 6 2.7393 0.2179 4.6025 18 6 2.6476 -0.5101 3.4523 19 6 2.0324 -0.7104 -1.2304 20 6 2.0720 -2.0918 -1.2631 21 6 2.5287 -2.7436 -2.3934 22 6 2.9542 -2.0138 -3.4876 23 6 2.9195 -0.6324 -3.4530 24 6 2.4587 0.0194 -2.3243 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.1811 1.7953 1.4388 29 1 1.3237 3.1192 3.4887 30 1 2.0754 -0.0608 8.0098 31 1 3.1774 -0.2201 5.4872 32 1 3.0136 -1.5259 3.4273 33 1 1.7433 -2.6620 -0.4067 34 1 2.5556 -3.8229 -2.4207 35 1 3.3136 -2.5229 -4.3697 36 1 3.2523 -0.0622 -4.3076 37 1 2.4314 1.0986 -2.2972 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070199438.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:18:47 Heat of formation + Delta-G solvation = -12.021844 kcal Electronic energy + Delta-G solvation = -19086.980957 eV Core-core repulsion = 16179.346229 eV Total energy + Delta-G solvation = -2907.634728 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.120 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.05167 -39.80864 -38.17081 -35.28370 -33.85921 -31.79168 -31.57935 -30.87066 -30.06802 -26.88208 -24.90770 -23.52386 -23.29327 -22.46634 -21.34466 -19.29268 -18.61265 -17.87327 -17.03301 -16.57035 -16.17229 -15.75599 -15.73270 -15.39254 -14.88064 -14.59290 -14.24862 -14.14460 -13.90081 -13.80986 -13.48030 -13.26027 -13.08287 -12.78718 -12.60542 -12.52343 -12.34669 -12.01377 -11.72773 -11.64882 -11.56898 -11.13373 -10.89396 -9.81419 -9.68436 -9.55139 -8.87472 -8.55718 -6.23920 0.38827 0.50958 0.95958 1.03465 1.39963 1.51327 1.54314 2.23683 2.55123 2.75314 2.92962 3.70034 3.72093 3.94844 4.10685 4.19971 4.25784 4.30508 4.33027 4.36005 4.59948 4.64552 4.71979 4.81702 4.91782 5.05369 5.08582 5.15380 5.19556 5.23797 5.30902 5.56304 5.56619 5.61914 5.64644 5.74392 5.90040 6.06562 6.11094 6.27808 6.58332 6.82047 6.96504 7.10792 8.40245 Molecular weight = 268.12amu Principal moments of inertia in cm(-1) A = 0.047003 B = 0.003576 C = 0.003490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 595.566136 B = 7827.806346 C = 8020.821330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.121 3.879 3 H 0.074 0.926 4 O -0.327 6.327 5 C 0.007 3.993 6 C -0.166 4.166 7 C -0.205 4.205 8 C 0.054 3.946 9 C -0.500 4.500 10 H 0.076 0.924 11 C 0.031 3.969 12 N -0.837 5.837 13 Si 0.984 3.016 14 H -0.260 1.260 15 H -0.269 1.269 16 H -0.261 1.261 17 C -0.148 4.148 18 C -0.137 4.137 19 C -0.098 4.098 20 C -0.114 4.114 21 C -0.129 4.129 22 C -0.121 4.121 23 C -0.122 4.122 24 C -0.120 4.120 25 H 0.089 0.911 26 H 0.060 0.940 27 H 0.055 0.945 28 H 0.129 0.871 29 H 0.106 0.894 30 H 0.286 0.714 31 H 0.112 0.888 32 H 0.106 0.894 33 H 0.112 0.888 34 H 0.140 0.860 35 H 0.150 0.850 36 H 0.151 0.849 37 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.087 -2.451 -16.402 16.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.065 3.935 3 H 0.092 0.908 4 O -0.243 6.243 5 C -0.036 4.036 6 C -0.185 4.185 7 C -0.224 4.224 8 C 0.052 3.948 9 C -0.530 4.530 10 H 0.094 0.906 11 C -0.182 4.182 12 N -0.465 5.465 13 Si 0.805 3.195 14 H -0.184 1.184 15 H -0.194 1.194 16 H -0.185 1.185 17 C -0.168 4.168 18 C -0.155 4.155 19 C -0.098 4.098 20 C -0.132 4.132 21 C -0.146 4.146 22 C -0.139 4.139 23 C -0.140 4.140 24 C -0.138 4.138 25 H 0.108 0.892 26 H 0.080 0.920 27 H 0.074 0.926 28 H 0.146 0.854 29 H 0.124 0.876 30 H 0.096 0.904 31 H 0.130 0.870 32 H 0.125 0.875 33 H 0.130 0.870 34 H 0.158 0.842 35 H 0.168 0.832 36 H 0.169 0.831 37 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 0.090 -2.838 -16.264 16.510 hybrid contribution -0.055 0.381 1.105 1.170 sum 0.035 -2.457 -15.159 15.357 Atomic orbital electron populations 1.22286 0.93904 1.03052 1.03074 1.21127 0.94666 0.95594 0.82110 0.90823 1.85887 1.83034 1.39187 1.16240 1.18667 1.06614 0.91782 0.86571 1.20720 1.04974 0.93902 0.98889 1.20843 1.06931 1.00314 0.94349 1.17943 0.90608 0.92960 0.93306 1.19704 1.47279 0.94799 0.91214 0.90610 1.26738 0.91815 0.95883 1.03795 1.69872 1.36020 1.12305 1.28271 0.85222 0.79792 0.78663 0.75806 1.18440 1.19388 1.18536 1.20967 1.03251 0.96175 0.96401 1.20020 1.03934 0.99611 0.91979 1.19750 1.01041 0.94563 0.94443 1.21109 0.99532 0.94076 0.98487 1.21442 0.98984 1.01084 0.93131 1.21548 0.98944 0.94391 0.98999 1.21452 0.99214 0.95104 0.98236 1.21217 0.98735 1.00641 0.93194 0.89187 0.92044 0.92567 0.85373 0.87598 0.90351 0.86982 0.87550 0.86963 0.84171 0.83216 0.83148 0.84686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.69 9.11 71.98 0.66 -4.04 16 2 C 0.12 3.87 2.44 29.85 0.07 3.95 16 3 H 0.07 2.32 6.22 -2.39 -0.01 2.31 16 4 O -0.33 -13.34 9.11 -89.88 -0.82 -14.16 16 5 C 0.01 0.35 6.61 22.79 0.15 0.50 16 6 C -0.17 -7.42 8.11 22.11 0.18 -7.24 16 7 C -0.20 -10.17 9.74 22.48 0.22 -9.95 16 8 C 0.05 2.98 5.57 -21.28 -0.12 2.86 16 9 C -0.50 -27.43 9.05 23.40 0.21 -27.21 16 10 H 0.08 3.97 7.88 -2.91 -0.02 3.95 16 11 C 0.03 1.57 5.22 85.23 0.45 2.02 16 12 N -0.84 -44.91 10.81 21.82 0.24 -44.67 16 13 Si 0.98 38.97 29.58 68.60 2.03 41.00 16 14 H -0.26 -9.94 7.11 99.48 0.71 -9.23 16 15 H -0.27 -10.13 7.11 99.48 0.71 -9.42 16 16 H -0.26 -10.08 7.11 99.48 0.71 -9.37 16 17 C -0.15 -8.11 8.62 22.48 0.19 -7.92 16 18 C -0.14 -6.84 9.92 22.11 0.22 -6.62 16 19 C -0.10 -2.75 4.97 -19.87 -0.10 -2.84 16 20 C -0.11 -3.11 9.36 22.27 0.21 -2.91 16 21 C -0.13 -2.75 10.05 22.27 0.22 -2.53 16 22 C -0.12 -2.17 10.05 22.27 0.22 -1.95 16 23 C -0.12 -2.26 10.05 22.27 0.22 -2.03 16 24 C -0.12 -2.74 9.67 22.27 0.22 -2.52 16 25 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 26 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 27 H 0.06 1.75 6.77 -2.39 -0.02 1.73 16 28 H 0.13 4.81 5.35 -2.91 -0.02 4.79 16 29 H 0.11 4.88 8.06 -2.91 -0.02 4.85 16 30 H 0.29 13.94 8.30 -92.71 -0.77 13.17 16 31 H 0.11 6.37 6.12 -2.91 -0.02 6.35 16 32 H 0.11 4.95 8.06 -2.91 -0.02 4.93 16 33 H 0.11 3.30 7.77 -2.91 -0.02 3.28 16 34 H 0.14 2.33 8.06 -2.91 -0.02 2.31 16 35 H 0.15 1.74 8.06 -2.91 -0.02 1.71 16 36 H 0.15 1.85 8.06 -2.91 -0.02 1.82 16 37 H 0.14 2.60 8.04 -2.91 -0.02 2.58 16 Total: -1.00 -62.53 312.38 5.73 -56.79 By element: Atomic # 1 Polarization: 28.41 SS G_CDS: 1.06 Total: 29.48 kcal Atomic # 6 Polarization: -71.67 SS G_CDS: 3.23 Total: -68.44 kcal Atomic # 7 Polarization: -44.91 SS G_CDS: 0.24 Total: -44.67 kcal Atomic # 8 Polarization: -13.34 SS G_CDS: -0.82 Total: -14.16 kcal Atomic # 14 Polarization: 38.97 SS G_CDS: 2.03 Total: 41.00 kcal Total: -62.53 5.73 -56.79 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070199438.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.773 kcal (2) G-P(sol) polarization free energy of solvation -62.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds