Wall clock time and date at job start Mon Mar 30 2020 07:48:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.37925 * 120.46192 * 2 1 4 4 N 1.31982 * 120.83854 * 179.97438 * 3 2 1 5 5 C 1.32014 * 121.91441 * 359.97438 * 4 3 2 6 6 C 1.37869 * 120.84545 * 359.97438 * 5 4 3 7 7 C 1.39466 * 120.47042 * 179.97438 * 2 1 3 8 8 N 1.39230 * 120.86503 * 359.97438 * 7 2 1 9 9 C 1.46496 * 120.00208 * 270.02666 * 8 7 2 10 10 C 1.50699 * 109.47492 * 90.00215 * 9 8 7 11 11 H 1.07998 * 119.99586 * 359.97438 * 10 9 8 12 12 C 1.37875 * 120.00113 * 180.02562 * 10 9 8 13 13 N 1.31512 * 120.00142 * 359.97438 * 12 10 9 14 14 Si 1.86801 * 119.99630 * 179.97438 * 12 10 9 15 15 H 1.48495 * 109.47472 * 359.97438 * 14 12 10 16 16 H 1.48500 * 109.47197 * 119.99961 * 14 12 10 17 17 H 1.48501 * 109.47000 * 239.99657 * 14 12 10 18 18 C 1.39743 * 119.99991 * 90.02753 * 8 7 2 19 19 C 1.38927 * 120.07234 * 359.72455 * 18 8 7 20 20 C 1.38098 * 119.92165 * 179.74437 * 19 18 8 21 21 C 1.38294 * 120.07420 * 0.50758 * 20 19 18 22 22 C 1.38284 * 120.15402 * 359.76938 * 21 20 19 23 23 C 1.38110 * 120.07154 * 359.97438 * 22 21 20 24 24 H 1.08996 * 109.47313 * 270.04166 * 1 2 3 25 25 H 1.08996 * 109.47638 * 30.04521 * 1 2 3 26 26 H 1.09007 * 109.47099 * 150.04426 * 1 2 3 27 27 H 1.07991 * 119.58086 * 359.97438 * 3 2 1 28 28 H 1.07999 * 119.57693 * 179.97438 * 5 4 3 29 29 H 1.07995 * 120.46679 * 180.02562 * 6 5 4 30 30 H 1.09001 * 109.47367 * 210.00477 * 9 8 7 31 31 H 1.09004 * 109.47195 * 329.99646 * 9 8 7 32 32 H 0.97003 * 119.99873 * 180.02562 * 13 12 10 33 33 H 1.08002 * 120.03577 * 359.97438 * 19 18 8 34 34 H 1.08005 * 119.96213 * 180.25243 * 20 19 18 35 35 H 1.07998 * 119.91890 * 179.74152 * 21 20 19 36 36 H 1.07993 * 119.96417 * 180.02562 * 22 21 20 37 37 H 1.07994 * 120.03448 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2062 1.1889 0.0000 4 7 3.5260 1.1975 0.0005 5 6 4.2312 0.0816 0.0015 6 6 3.6082 -1.1483 0.0026 7 6 2.2142 -1.2020 0.0005 8 7 1.5463 -2.4237 0.0016 9 6 1.1949 -3.0653 1.2708 10 6 -0.1723 -2.6039 1.7055 11 1 -0.7240 -1.9025 1.0973 12 6 -0.7182 -3.0764 2.8801 13 7 -0.0461 -3.9301 3.6209 14 14 -2.4127 -2.5038 3.4191 15 1 -2.9544 -1.5498 2.4183 16 1 -3.3192 -3.6748 3.5288 17 1 -2.3111 -1.8310 4.7391 18 6 1.2112 -3.0379 -1.2081 19 6 1.5386 -2.4280 -2.4126 20 6 1.2107 -3.0403 -3.6062 21 6 0.5477 -4.2540 -3.6033 22 6 0.2152 -4.8610 -2.4062 23 6 0.5449 -4.2568 -1.2088 24 1 -0.3634 0.0007 1.0276 25 1 -0.3634 0.8895 -0.5145 26 1 -0.3634 -0.8904 -0.5132 27 1 1.6669 2.1245 -0.0004 28 1 5.3100 0.1327 0.0015 29 1 4.1912 -2.0574 0.0039 30 1 1.1890 -4.1476 1.1415 31 1 1.9284 -2.7943 2.0303 32 1 -0.4304 -4.2628 4.4471 33 1 2.0524 -1.4780 -2.4155 34 1 1.4686 -2.5687 -4.5430 35 1 0.2888 -4.7285 -4.5383 36 1 -0.3021 -5.8090 -2.4075 37 1 0.2845 -4.7312 -0.2743 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070489030.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:48:48 Heat of formation + Delta-G solvation = 69.245557 kcal Electronic energy + Delta-G solvation = -20198.346085 eV Core-core repulsion = 17326.528127 eV Total energy + Delta-G solvation = -2871.817958 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.127 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.26592 -38.62829 -35.97028 -32.94263 -32.57917 -31.13747 -30.28896 -28.99638 -27.48282 -26.02769 -23.61570 -22.70595 -21.89626 -21.41958 -20.09620 -17.48087 -16.86214 -16.23511 -15.92524 -15.12996 -14.77754 -14.40807 -14.29932 -14.02217 -13.44838 -13.21064 -12.99453 -12.86086 -12.82614 -12.29322 -12.13154 -11.92216 -11.39675 -11.36690 -11.08047 -10.92781 -10.79923 -10.37713 -10.20277 -9.86712 -9.24303 -9.04568 -8.99185 -8.59175 -8.49527 -8.39961 -6.75708 -6.14480 -4.24402 1.46681 1.55441 1.96590 2.14449 3.19926 3.28856 3.31175 3.81047 4.10042 4.32018 4.43795 4.73156 5.14793 5.20473 5.27268 5.36668 5.42992 5.45659 5.63126 5.74297 5.86233 5.96951 6.04097 6.15785 6.16200 6.28598 6.33153 6.51388 6.62526 6.80405 6.83345 6.92849 7.03186 7.04878 7.12508 7.23664 7.46402 7.75301 8.04321 8.11940 8.25723 8.35134 8.82967 9.42209 10.88740 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.012586 B = 0.008995 C = 0.006219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2224.213401 B = 3111.939522 C = 4501.159327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.123 4.123 3 C 0.093 3.907 4 N -0.492 5.492 5 C 0.088 3.912 6 C -0.174 4.174 7 C 0.218 3.782 8 N -0.579 5.579 9 C 0.255 3.745 10 C -0.538 4.538 11 H 0.074 0.926 12 C 0.063 3.937 13 N -0.893 5.893 14 Si 0.893 3.107 15 H -0.271 1.271 16 H -0.283 1.283 17 H -0.284 1.284 18 C 0.235 3.765 19 C -0.205 4.205 20 C -0.081 4.081 21 C -0.193 4.193 22 C -0.079 4.079 23 C -0.177 4.177 24 H 0.085 0.915 25 H 0.054 0.946 26 H 0.076 0.924 27 H 0.151 0.849 28 H 0.151 0.849 29 H 0.131 0.869 30 H 0.041 0.959 31 H 0.030 0.970 32 H 0.264 0.736 33 H 0.109 0.891 34 H 0.110 0.890 35 H 0.108 0.892 36 H 0.114 0.886 37 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.313 3.469 -9.565 10.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.127 4.127 3 C -0.064 4.064 4 N -0.201 5.201 5 C -0.069 4.069 6 C -0.196 4.196 7 C 0.117 3.883 8 N -0.284 5.284 9 C 0.137 3.863 10 C -0.577 4.577 11 H 0.092 0.908 12 C -0.140 4.140 13 N -0.532 5.532 14 Si 0.720 3.280 15 H -0.196 1.196 16 H -0.209 1.209 17 H -0.210 1.210 18 C 0.133 3.867 19 C -0.228 4.228 20 C -0.099 4.099 21 C -0.214 4.214 22 C -0.098 4.098 23 C -0.199 4.199 24 H 0.104 0.896 25 H 0.073 0.927 26 H 0.095 0.905 27 H 0.168 0.832 28 H 0.169 0.831 29 H 0.149 0.851 30 H 0.059 0.941 31 H 0.048 0.952 32 H 0.073 0.927 33 H 0.127 0.873 34 H 0.128 0.872 35 H 0.126 0.874 36 H 0.132 0.868 37 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 3.782 4.212 -9.183 10.787 hybrid contribution -1.344 -0.614 0.600 1.595 sum 2.438 3.599 -8.582 9.620 Atomic orbital electron populations 1.20826 0.89797 1.02082 1.03518 1.21421 0.98446 0.93380 0.99433 1.22483 0.89731 0.97064 0.97114 1.67613 1.08235 1.31480 1.12746 1.22460 0.99883 0.87354 0.97188 1.22528 0.94864 0.99741 1.02468 1.17608 0.90047 0.86277 0.94349 1.44458 1.59924 1.18476 1.05527 1.19391 0.95938 0.93401 0.77585 1.21826 1.01826 1.27380 1.06633 0.90775 1.24952 0.97786 0.94904 0.96317 1.69938 1.37854 1.31124 1.14303 0.86517 0.84088 0.78740 0.78621 1.19552 1.20852 1.20978 1.17843 0.92275 0.91537 0.85090 1.20585 1.08951 1.01704 0.91551 1.20699 0.97504 0.95116 0.96631 1.20737 1.05615 0.97620 0.97395 1.20852 0.98049 0.98846 0.92059 1.20921 1.03924 0.95957 0.99126 0.89633 0.92710 0.90491 0.83151 0.83147 0.85060 0.94106 0.95227 0.92673 0.87335 0.87196 0.87363 0.86781 0.84739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.83 8.20 36.00 0.30 -1.54 16 2 C -0.12 -2.18 5.91 -104.28 -0.62 -2.80 16 3 C 0.09 1.49 10.85 -17.60 -0.19 1.30 16 4 N -0.49 -8.04 10.36 -13.35 -0.14 -8.18 16 5 C 0.09 1.33 11.17 -17.61 -0.20 1.14 16 6 C -0.17 -2.90 10.06 -39.24 -0.39 -3.30 16 7 C 0.22 4.09 3.52 -83.57 -0.29 3.79 16 8 N -0.58 -11.82 1.84 -112.75 -0.21 -12.03 16 9 C 0.25 6.08 4.90 -5.20 -0.03 6.06 16 10 C -0.54 -13.67 8.83 -34.44 -0.30 -13.98 16 11 H 0.07 1.85 4.47 -52.49 -0.23 1.61 16 12 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 13 N -0.89 -24.81 13.29 55.43 0.74 -24.07 16 14 Si 0.89 20.52 29.54 -169.99 -5.02 15.50 16 15 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 16 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 17 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 18 C 0.24 4.55 6.04 -83.75 -0.51 4.04 16 19 C -0.21 -3.57 9.31 -39.38 -0.37 -3.93 16 20 C -0.08 -1.24 10.04 -39.61 -0.40 -1.64 16 21 C -0.19 -2.92 10.04 -39.54 -0.40 -3.31 16 22 C -0.08 -1.29 10.04 -39.61 -0.40 -1.69 16 23 C -0.18 -3.39 9.21 -39.38 -0.36 -3.75 16 24 H 0.09 1.62 7.17 -51.93 -0.37 1.25 16 25 H 0.05 0.78 8.09 -51.93 -0.42 0.36 16 26 H 0.08 1.49 6.27 -51.92 -0.33 1.17 16 27 H 0.15 1.98 8.06 -52.49 -0.42 1.56 16 28 H 0.15 1.78 8.06 -52.49 -0.42 1.36 16 29 H 0.13 2.03 8.06 -52.49 -0.42 1.61 16 30 H 0.04 1.02 6.20 -51.93 -0.32 0.70 16 31 H 0.03 0.77 8.05 -51.93 -0.42 0.35 16 32 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 33 H 0.11 1.87 6.99 -52.49 -0.37 1.50 16 34 H 0.11 1.41 8.06 -52.48 -0.42 0.98 16 35 H 0.11 1.35 8.06 -52.49 -0.42 0.93 16 36 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 37 H 0.13 2.80 6.14 -52.49 -0.32 2.48 16 LS Contribution 309.98 15.07 4.67 4.67 Total: -1.00 -27.74 309.98 -8.67 -36.40 By element: Atomic # 1 Polarization: 10.20 SS G_CDS: -4.45 Total: 5.74 kcal Atomic # 6 Polarization: -13.79 SS G_CDS: -4.25 Total: -18.04 kcal Atomic # 7 Polarization: -44.67 SS G_CDS: 0.39 Total: -44.28 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -27.74 -8.67 -36.40 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070489030.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.650 kcal (2) G-P(sol) polarization free energy of solvation -27.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.404 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds