Wall clock time and date at job start Mon Mar 30 2020 07:48:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.37925 * 120.46192 * 2 1 4 4 N 1.31982 * 120.83854 * 179.97438 * 3 2 1 5 5 C 1.32014 * 121.91441 * 359.97438 * 4 3 2 6 6 C 1.37869 * 120.84545 * 359.97438 * 5 4 3 7 7 C 1.39466 * 120.47042 * 179.97438 * 2 1 3 8 8 N 1.39230 * 120.86503 * 359.97438 * 7 2 1 9 9 C 1.46496 * 120.00208 * 270.02666 * 8 7 2 10 10 C 1.50699 * 109.47492 * 90.00215 * 9 8 7 11 11 H 1.07998 * 119.99586 * 359.97438 * 10 9 8 12 12 C 1.37875 * 120.00113 * 180.02562 * 10 9 8 13 13 N 1.31512 * 120.00142 * 359.97438 * 12 10 9 14 14 Si 1.86801 * 119.99630 * 179.97438 * 12 10 9 15 15 H 1.48495 * 109.47472 * 359.97438 * 14 12 10 16 16 H 1.48500 * 109.47197 * 119.99961 * 14 12 10 17 17 H 1.48501 * 109.47000 * 239.99657 * 14 12 10 18 18 C 1.39743 * 119.99991 * 90.02753 * 8 7 2 19 19 C 1.38927 * 120.07234 * 359.72455 * 18 8 7 20 20 C 1.38098 * 119.92165 * 179.74437 * 19 18 8 21 21 C 1.38294 * 120.07420 * 0.50758 * 20 19 18 22 22 C 1.38284 * 120.15402 * 359.76938 * 21 20 19 23 23 C 1.38110 * 120.07154 * 359.97438 * 22 21 20 24 24 H 1.08996 * 109.47313 * 270.04166 * 1 2 3 25 25 H 1.08996 * 109.47638 * 30.04521 * 1 2 3 26 26 H 1.09007 * 109.47099 * 150.04426 * 1 2 3 27 27 H 1.07991 * 119.58086 * 359.97438 * 3 2 1 28 28 H 1.07999 * 119.57693 * 179.97438 * 5 4 3 29 29 H 1.07995 * 120.46679 * 180.02562 * 6 5 4 30 30 H 1.09001 * 109.47367 * 210.00477 * 9 8 7 31 31 H 1.09004 * 109.47195 * 329.99646 * 9 8 7 32 32 H 0.97003 * 119.99873 * 180.02562 * 13 12 10 33 33 H 1.08002 * 120.03577 * 359.97438 * 19 18 8 34 34 H 1.08005 * 119.96213 * 180.25243 * 20 19 18 35 35 H 1.07998 * 119.91890 * 179.74152 * 21 20 19 36 36 H 1.07993 * 119.96417 * 180.02562 * 22 21 20 37 37 H 1.07994 * 120.03448 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2062 1.1889 0.0000 4 7 3.5260 1.1975 0.0005 5 6 4.2312 0.0816 0.0015 6 6 3.6082 -1.1483 0.0026 7 6 2.2142 -1.2020 0.0005 8 7 1.5463 -2.4237 0.0016 9 6 1.1949 -3.0653 1.2708 10 6 -0.1723 -2.6039 1.7055 11 1 -0.7240 -1.9025 1.0973 12 6 -0.7182 -3.0764 2.8801 13 7 -0.0461 -3.9301 3.6209 14 14 -2.4127 -2.5038 3.4191 15 1 -2.9544 -1.5498 2.4183 16 1 -3.3192 -3.6748 3.5288 17 1 -2.3111 -1.8310 4.7391 18 6 1.2112 -3.0379 -1.2081 19 6 1.5386 -2.4280 -2.4126 20 6 1.2107 -3.0403 -3.6062 21 6 0.5477 -4.2540 -3.6033 22 6 0.2152 -4.8610 -2.4062 23 6 0.5449 -4.2568 -1.2088 24 1 -0.3634 0.0007 1.0276 25 1 -0.3634 0.8895 -0.5145 26 1 -0.3634 -0.8904 -0.5132 27 1 1.6669 2.1245 -0.0004 28 1 5.3100 0.1327 0.0015 29 1 4.1912 -2.0574 0.0039 30 1 1.1890 -4.1476 1.1415 31 1 1.9284 -2.7943 2.0303 32 1 -0.4304 -4.2628 4.4471 33 1 2.0524 -1.4780 -2.4155 34 1 1.4686 -2.5687 -4.5430 35 1 0.2888 -4.7285 -4.5383 36 1 -0.3021 -5.8090 -2.4075 37 1 0.2845 -4.7312 -0.2743 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070489030.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:48:48 Heat of formation + Delta-G solvation = 56.186720 kcal Electronic energy + Delta-G solvation = -20198.912358 eV Core-core repulsion = 17326.528127 eV Total energy + Delta-G solvation = -2872.384232 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.127 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.61189 -39.96523 -37.41905 -34.86617 -33.93547 -32.51420 -31.63017 -30.57038 -29.01573 -27.52645 -25.30998 -24.15769 -23.22398 -22.78225 -21.51185 -18.85739 -18.71378 -17.68317 -17.39825 -16.72518 -16.08615 -15.97749 -15.69822 -15.33891 -14.83687 -14.71361 -14.50710 -14.26918 -14.19076 -13.82797 -13.58813 -13.34102 -13.22198 -12.95867 -12.63382 -12.62260 -12.25860 -12.04025 -11.72426 -11.59520 -10.68884 -10.62260 -10.50817 -10.36671 -9.81503 -9.73515 -8.41612 -8.00507 -6.33443 0.19199 0.20660 0.62859 0.81525 1.35771 1.38499 1.48988 2.26143 2.43485 2.82101 3.08894 3.10127 3.56803 3.95176 3.97225 4.06337 4.15438 4.20909 4.38763 4.45195 4.54933 4.70505 4.77513 4.78586 4.82767 4.88190 4.97469 5.04139 5.10833 5.25730 5.29942 5.47394 5.55055 5.69451 5.71602 5.75136 5.82467 6.06915 6.13675 6.47442 6.82869 6.87919 6.99471 7.37066 8.85723 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.012586 B = 0.008995 C = 0.006219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2224.213401 B = 3111.939522 C = 4501.159327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.141 4.141 3 C 0.100 3.900 4 N -0.500 5.500 5 C 0.098 3.902 6 C -0.184 4.184 7 C 0.192 3.808 8 N -0.584 5.584 9 C 0.275 3.725 10 C -0.537 4.537 11 H 0.077 0.923 12 C 0.012 3.988 13 N -0.930 5.930 14 Si 0.954 3.046 15 H -0.262 1.262 16 H -0.281 1.281 17 H -0.282 1.282 18 C 0.212 3.788 19 C -0.207 4.207 20 C -0.075 4.075 21 C -0.183 4.183 22 C -0.079 4.079 23 C -0.206 4.206 24 H 0.064 0.936 25 H 0.088 0.912 26 H 0.051 0.949 27 H 0.181 0.819 28 H 0.187 0.813 29 H 0.136 0.864 30 H 0.019 0.981 31 H -0.001 1.001 32 H 0.264 0.736 33 H 0.109 0.891 34 H 0.145 0.855 35 H 0.145 0.855 36 H 0.135 0.865 37 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.159 4.875 -11.822 13.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.144 4.144 3 C -0.057 4.057 4 N -0.209 5.209 5 C -0.058 4.058 6 C -0.205 4.205 7 C 0.092 3.908 8 N -0.290 5.290 9 C 0.155 3.845 10 C -0.576 4.576 11 H 0.095 0.905 12 C -0.187 4.187 13 N -0.570 5.570 14 Si 0.779 3.221 15 H -0.186 1.186 16 H -0.206 1.206 17 H -0.208 1.208 18 C 0.111 3.889 19 C -0.230 4.230 20 C -0.094 4.094 21 C -0.203 4.203 22 C -0.098 4.098 23 C -0.228 4.228 24 H 0.083 0.917 25 H 0.106 0.894 26 H 0.070 0.930 27 H 0.198 0.802 28 H 0.204 0.796 29 H 0.153 0.847 30 H 0.037 0.963 31 H 0.017 0.983 32 H 0.073 0.927 33 H 0.127 0.873 34 H 0.163 0.837 35 H 0.163 0.837 36 H 0.153 0.847 37 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 3.633 5.628 -11.477 13.289 hybrid contribution -1.227 -1.072 1.187 2.016 sum 2.405 4.556 -10.290 11.508 Atomic orbital electron populations 1.20675 0.89917 1.02448 1.02213 1.21536 0.98562 0.93736 1.00615 1.22899 0.89809 0.97468 0.95523 1.67736 1.08368 1.31731 1.13016 1.22986 1.01460 0.86306 0.95096 1.22666 0.94177 1.00829 1.02829 1.17948 0.91045 0.85961 0.95827 1.44140 1.60953 1.19283 1.04623 1.18836 0.94567 0.92318 0.78769 1.22109 1.02338 1.26691 1.06413 0.90468 1.25742 1.01256 0.95102 0.96574 1.70058 1.39550 1.32569 1.14819 0.85561 0.79931 0.78375 0.78236 1.18559 1.20648 1.20775 1.18074 0.93402 0.91983 0.85396 1.20668 1.09016 1.01787 0.91482 1.21125 0.96131 0.95012 0.97097 1.21153 1.03886 0.97179 0.98107 1.21133 0.97551 0.99551 0.91567 1.20860 1.05986 0.96779 0.99182 0.91747 0.89353 0.92997 0.80216 0.79614 0.84650 0.96323 0.98326 0.92699 0.87292 0.83744 0.83717 0.84693 0.87880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.30 8.20 71.23 0.58 -2.71 16 2 C -0.14 -4.93 5.91 -19.64 -0.12 -5.05 16 3 C 0.10 3.01 10.85 84.60 0.92 3.93 16 4 N -0.50 -15.22 10.36 -196.16 -2.03 -17.25 16 5 C 0.10 2.79 11.17 84.58 0.94 3.73 16 6 C -0.18 -6.08 10.06 22.49 0.23 -5.85 16 7 C 0.19 7.33 3.52 38.57 0.14 7.47 16 8 N -0.58 -24.95 1.84 -510.62 -0.94 -25.88 16 9 C 0.28 14.02 4.90 85.63 0.42 14.44 16 10 C -0.54 -28.48 8.83 25.60 0.23 -28.25 16 11 H 0.08 3.98 4.47 -2.91 -0.01 3.97 16 12 C 0.01 0.66 5.46 84.65 0.46 1.12 16 13 N -0.93 -53.75 13.29 21.45 0.28 -53.46 16 14 Si 0.95 42.92 29.54 68.60 2.03 44.95 16 15 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 16 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 17 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 18 C 0.21 8.44 6.04 38.21 0.23 8.67 16 19 C -0.21 -7.01 9.31 22.40 0.21 -6.80 16 20 C -0.08 -2.09 10.04 22.25 0.22 -1.87 16 21 C -0.18 -4.95 10.04 22.29 0.22 -4.73 16 22 C -0.08 -2.52 10.04 22.25 0.22 -2.29 16 23 C -0.21 -8.16 9.21 22.40 0.21 -7.95 16 24 H 0.06 2.47 7.17 -2.39 -0.02 2.45 16 25 H 0.09 2.36 8.09 -2.39 -0.02 2.34 16 26 H 0.05 2.04 6.27 -2.38 -0.01 2.02 16 27 H 0.18 4.20 8.06 -2.92 -0.02 4.18 16 28 H 0.19 3.84 8.06 -2.91 -0.02 3.82 16 29 H 0.14 4.25 8.06 -2.91 -0.02 4.23 16 30 H 0.02 1.03 6.20 -2.39 -0.01 1.01 16 31 H 0.00 -0.07 8.05 -2.38 -0.02 -0.09 16 32 H 0.26 14.48 8.31 -92.71 -0.77 13.71 16 33 H 0.11 3.65 6.99 -2.91 -0.02 3.63 16 34 H 0.14 3.03 8.06 -2.91 -0.02 3.01 16 35 H 0.15 2.90 8.06 -2.91 -0.02 2.88 16 36 H 0.14 3.59 8.06 -2.91 -0.02 3.57 16 37 H 0.10 4.67 6.14 -2.91 -0.02 4.65 16 Total: -1.00 -62.13 309.98 5.53 -56.60 By element: Atomic # 1 Polarization: 20.15 SS G_CDS: 1.07 Total: 21.22 kcal Atomic # 6 Polarization: -31.28 SS G_CDS: 5.12 Total: -26.16 kcal Atomic # 7 Polarization: -93.92 SS G_CDS: -2.68 Total: -96.60 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 2.03 Total: 44.95 kcal Total: -62.13 5.53 -56.60 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070489030.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.782 kcal (2) G-P(sol) polarization free energy of solvation -62.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.595 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds